Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0014579

Physical Location & Seq

Genomic Coordinates Forward (+)

21204237 .. 21205828

Gene Structure 1592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCAGAGAAACTCCCCGAAACTGAAGCCGCCGCCCCTGCCGCCGCTGCCGCCGCTGAAGATATGGACCTAGAAACTTCAGAGCCCGCCGCGGCTCAAAATCCGGACGAGGTCGAAGCTACTGACGGGGAGGCTGAGGCGAACTCGAAGCGGGTGAGGGACGAGGAGGGGAGTGAAGAAAACGATGCAAAGAAGACGAAAGTGGAGAAGTCGCCGGAGGAAGAACGGTTTGAGAAGAAGTTTGAGGAAGGAGAGAAGTCGGGTCGGGTCAGCTTGGGTCCGCAGAGTTTTGGGTCGTCGGTGGAGATGTTCGACTACTTCTACAAGTTCCTCCATTACTGGCCTACTGATCTCAATGTCAATAAGTATGAATATCTGGTTTTGCTGGACTTGCTTAAGAAGGGTCATGCCGAGCCTGATAAGAAGATTGGCGGAGGGGTCAAGGCTTTCCAAGTTCGGATCCATCCGTTGTATAAAAGCAGGTGCTTCTTCCTCATTAGGGAAGATGAAGTTGTTGATGATTTTAGCTTCAGGAAGTGTGTGGACCATATACTTCCCTTGCCTGAGAACATGAAAGCAAACGCTGAAGCCAATAAAGTCTTAGGTGGCAAGGGTGGCAGGGGTGGTGGCGGTGGTGGAGGCTGGCGTGGTCGTGGAAGGGGTAAGCCGAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006996 GO:0006997 GO:0007000 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017126 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051302 GO:0061458 GO:0065007 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3223

Protein Analysis

226

Amino Acids

24.89

Weight (kDa)

5.27

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014579)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62440
fragaria_vesca	FvH4_5g14920
malus_domestica	MD06G1193500.v1.1 MD14G1200600.v1.1
prunus_persica	Prupe.5G193800_v2.0.a1
pyrus_communis	pycom06g17160 pycom14g16630
rosa_chinensis	RchiOBHm_Chr7g0181461
rosa_laevigata	RLG00000005192
rosa_multiflora	Rmu_sc0004621.1_g000022
rosa_roxburghii	Rroxscaffold_3G00271980
rosa_rugosa	Rorug06G0441500
rosa_samantha	Rh7AG043300 Rh7BG042700 Rh7CG044500 Rh7DG043100
rosa_wichuraiana	Rw7G003600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	471
Acc36I	ACCTGC	1 cut(s)	471
AccII	CGCG	1 cut(s)	92
AccIII	TCCGGA	1 cut(s)	103
AclWI	GGATC	2 cut(s)	454, 467
AcuI	CTGAAG	5 cut(s)	45, 63, 78, 514, 606
AfiI	CCNNNNNNNGG	1 cut(s)	499
AflII	CTTAAG	1 cut(s)	395
AluBI	AGCT	3 cut(s)	119, 273, 528
AluI	AGCT	3 cut(s)	119, 273, 528
AlwI	GGATC	2 cut(s)	454, 467
Aor13HI	TCCGGA	1 cut(s)	103
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	1 cut(s)	47
AspS9I	GGNCC	3 cut(s)	67, 278, 544
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	3 cut(s)	67, 278, 544
BamHI	GGATCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	1 cut(s)	471
BfaI	CTAG	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	471
BisI	GCNGC	9 cut(s)	30, 33, 42, 45, 48, 51, 54, 90, 93
BlsI	GCNGC	9 cut(s)	31, 34, 43, 46, 49, 52, 55, 91, 94
Bme18I	GGWCC	3 cut(s)	67, 278, 544
BmgT120I	GGNCC	3 cut(s)	67, 278, 544
BmiI	GGNNCC	2 cut(s)	279, 461
BmsI	GCATC	1 cut(s)	175
BpiI	GAAGAC	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
Bpu10I	CCTNAGC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse1I	ACTGG	1 cut(s)	344
BseAI	TCCGGA	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMII	CTCAG	2 cut(s)	126, 555
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	104, 215
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp13I	TCCGGA	1 cut(s)	103
Bsp143I	GATC	2 cut(s)	349, 459
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	2 cut(s)	127, 556
BspEI	TCCGGA	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	279, 461
BspMI	ACCTGC	1 cut(s)	471
BspPI	GGATC	2 cut(s)	454, 467
BspTI	CTTAAG	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	349, 459
Bst4CI	ACNGT	1 cut(s)	228
BstAFI	CTTAAG	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	87, 644
BstDEI	CTNAG	3 cut(s)	135, 564, 601
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	463
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	2 cut(s)	352, 462
BstMBI	GATC	2 cut(s)	349, 459
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 41, 47, 50, 53, 391, 615
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	34
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	463
BveI	ACCTGC	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	87, 644
Cfr13I	GGNCC	3 cut(s)	67, 278, 544
Cfr42I	CCGCGG	1 cut(s)	93
CviAII	CATG	2 cut(s)	407, 571
DdeI	CTNAG	3 cut(s)	135, 564, 601
DpnI	GATC	2 cut(s)	351, 461
DpnII	GATC	2 cut(s)	349, 459
EciI	GGCGGA	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	3 cut(s)	67, 278, 544
Eco57I	CTGAAG	5 cut(s)	45, 63, 78, 514, 606
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	2 cut(s)	410, 574
FaiI	YATR	7 cut(s)	65, 369, 408, 474, 549, 551, 572
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	406, 570
FauI	CCCGC	2 cut(s)	94, 144
Fnu4HI	GCNGC	9 cut(s)	30, 33, 42, 45, 48, 51, 54, 90, 93
FokI	GGATG	1 cut(s)	450
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	9 cut(s)	30, 33, 42, 45, 48, 51, 54, 90, 93
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	9 cut(s)	30, 33, 42, 45, 48, 51, 54, 90, 93
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	2 cut(s)	104, 215
Hin1II	CATG	2 cut(s)	410, 574
HpaII	CCGG	2 cut(s)	104, 215
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	2 cut(s)	82, 459
Hpy188III	TCNNGA	2 cut(s)	104, 532
Hpy8I	GTNNAC	1 cut(s)	544
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	3 cut(s)	242, 394, 651
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 41, 47, 50, 53, 391, 615
HpyF3I	CTNAG	3 cut(s)	135, 564, 601
Hsp92II	CATG	2 cut(s)	410, 574
Kpn2I	TCCGGA	1 cut(s)	103
KspI	CCGCGG	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	349, 459
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	1 cut(s)	71
MalI	GATC	2 cut(s)	351, 461
MboI	GATC	2 cut(s)	349, 459
MboII	GAAGA	8 cut(s)	71, 188, 205, 233, 247, 436, 481, 515
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	87
MroI	TCCGGA	1 cut(s)	103
MseI	TTAA	1 cut(s)	396
MspA1I	CMGCKG	3 cut(s)	47, 56, 92
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	2 cut(s)	104, 215
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	7 cut(s)	38, 41, 47, 50, 53, 391, 615
NdeII	GATC	2 cut(s)	349, 459
NlaIII	CATG	2 cut(s)	410, 574
NlaIV	GGNNCC	2 cut(s)	279, 461
NmeAIII	GCCGAG	1 cut(s)	436
PaqCI	CACCTGC	1 cut(s)	471
PflFI	GACNNNGTC	1 cut(s)	110
PkrI	GCNGC	9 cut(s)	31, 34, 43, 46, 49, 52, 55, 91, 94
PspN4I	GGNNCC	2 cut(s)	279, 461
PspPI	GGNCC	3 cut(s)	67, 278, 544
PsuI	RGATCY	1 cut(s)	459
PsyI	GACNNNGTC	1 cut(s)	110
SacII	CCGCGG	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	9 cut(s)	30, 33, 42, 45, 48, 51, 54, 90, 93
Sau3AI	GATC	2 cut(s)	349, 459
Sau96I	GGNCC	3 cut(s)	67, 278, 544
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	7 cut(s)	72, 114, 121, 275, 485, 530, 607
SfaNI	GCATC	1 cut(s)	175
Sfr303I	CCGCGG	1 cut(s)	93
SgrBI	CCGCGG	1 cut(s)	93
SinI	GGWCC	3 cut(s)	67, 278, 544
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SspMI	CTAG	1 cut(s)	71
TaaI	ACNGT	1 cut(s)	228
TaqI	TCGA	3 cut(s)	114, 146, 312
TauI	GCSGC	8 cut(s)	32, 35, 44, 47, 53, 56, 92, 95
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	3 cut(s)	384, 522, 587
TspGWI	ACGGA	1 cut(s)	456
Tth111I	GACNNNGTC	1 cut(s)	110
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	3 cut(s)	67, 278, 544
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.