Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003739

Physical Location & Seq

Genomic Coordinates Reverse (-)

11010445 .. 11011762

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1148800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGTGGAGGAGTACAAGGATTTGGAACGAGTAATGCGGGAGAAGAAGCTGGCTCCGAGCTTGCCGTACGTGAAGGCCTTGTTTTTAGGGTGGTTTGAGCCGCTGAGGGAGGCGATTGCGAGGGAGCAGAAGGTGCAGCAAACGAAGAAGCACAAAGCGGCGTTTGCGCCGCACATTGACTTGCTGCCGCCGGATAAGATGGCGCTGATTGTTATGTATAATATCATGGGTTTGGTTATGGTGGGGAATCAAGACGGGTGTGTGCAGGTTGTTCAAGCTGCTGTTCATATCGGGATGGCCATAGAGCAGGAGGTTAGGATTCACAGTTTGTTGGAGAAAACCAAAAACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

118

Amino Acids

13.4

Weight (kDa)

8.71

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPOL_N	PF14700	2 - 115	1.2e-23	DNA-directed RNA polymerase N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15700 AT5G15700
fragaria_vesca	FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120
malus_domestica	MD09G1076800.v1.1 MD15G1148800.v1.1 MD17G1067300.v1.1
prunus_persica	Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1
pyrus_communis	pycom09g00400 pycom17g06760
rosa_chinensis	RchiOBHm_Chr2g0164571
rosa_laevigata	RLG00000021466
rosa_multiflora	Rmu_co8270321.1_g000001 Rmu_sc0020353.1_g000005 Rmu_ssc0000076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086480
rosa_rugosa	Rorug02G0509000 Rorug02G0509100 Rorug02G0509100 Rorug02G0509200.1
rosa_samantha	Rh2AG576800 Rh2BG587900 Rh2CG558700 Rh2DG598500
rosa_wichuraiana	Rw2G047890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AciI	CCGC	5 cut(s)	37, 101, 158, 170, 188
AcoI	YGGCCR	1 cut(s)	297
AfaI	GTAC	2 cut(s)	14, 68
AgsI	TTSAA	1 cut(s)	275
AluBI	AGCT	3 cut(s)	49, 60, 278
AluI	AGCT	3 cut(s)	49, 60, 278
AoxI	GGCC	2 cut(s)	75, 297
ApeKI	GCWGC	3 cut(s)	136, 184, 278
AspLEI	GCGC	2 cut(s)	169, 205
BalI	TGGCCA	1 cut(s)	299
BbvCI	CCTCAGC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	148, 171, 265
BccI	CCATC	2 cut(s)	193, 289
BceAI	ACGGC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	7 cut(s)	101, 137, 159, 170, 185, 188, 279
BlsI	GCNGC	7 cut(s)	102, 138, 160, 171, 186, 189, 280
BmiI	GGNNCC	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	70
BseGI	GGATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	148, 171, 265
BsgI	GTGCAG	2 cut(s)	155, 284
BshFI	GGCC	2 cut(s)	77, 299
BsiSI	CCGG	1 cut(s)	191
BsiWI	CGTACG	1 cut(s)	66
BsnI	GGCC	2 cut(s)	77, 299
BspACI	CCGC	5 cut(s)	37, 101, 158, 170, 188
BspANI	GGCC	2 cut(s)	77, 299
BspCNI	CTCAG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	70
BstC8I	GCNNGC	2 cut(s)	51, 62
BstDEI	CTNAG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	2 cut(s)	169, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 164
BstV1I	GCAGC	3 cut(s)	148, 171, 265
BsuRI	GGCC	2 cut(s)	77, 299
BtsCI	GGATG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	51, 62
CfoI	GCGC	2 cut(s)	169, 205
Csp6I	GTAC	2 cut(s)	13, 67
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	7 cut(s)	49, 53, 60, 77, 100, 278, 299
CviKI_1	RGCY	7 cut(s)	49, 53, 60, 77, 100, 278, 299
CviQI	GTAC	2 cut(s)	13, 67
DdeI	CTNAG	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	77
FaeI	CATG	1 cut(s)	229
FaiI	YATR	6 cut(s)	215, 219, 227, 239, 288, 302
FatI	CATG	1 cut(s)	225
FauI	CCCGC	1 cut(s)	30
Fnu4HI	GCNGC	7 cut(s)	101, 137, 159, 170, 185, 188, 279
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	7 cut(s)	101, 137, 159, 170, 185, 188, 279
FspBI	CTAG	1 cut(s)	352
GlaI	GCGC	2 cut(s)	168, 204
GluI	GCNGC	7 cut(s)	101, 137, 159, 170, 185, 188, 279
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	2 cut(s)	77, 299
HapII	CCGG	1 cut(s)	191
HhaI	GCGC	2 cut(s)	169, 205
Hin1II	CATG	1 cut(s)	229
Hin6I	GCGC	2 cut(s)	167, 203
HinP1I	GCGC	2 cut(s)	167, 203
HinfI	GANTC	2 cut(s)	247, 319
HpaII	CCGG	1 cut(s)	191
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	251, 292
HpyAV	CCTTC	2 cut(s)	67, 124
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	136, 265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 164
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	229
HspAI	GCGC	2 cut(s)	167, 203
LmnI	GCTCC	2 cut(s)	58, 124
LpnPI	CCDG	4 cut(s)	35, 204, 251, 293
Lsp1109I	GCAGC	3 cut(s)	148, 171, 265
MaeI	CTAG	1 cut(s)	352
MaeII	ACGT	1 cut(s)	69
MboII	GAAGA	2 cut(s)	55, 157
MlsI	TGGCCA	1 cut(s)	299
MluNI	TGGCCA	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	4 cut(s)	99, 103, 114, 304
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
Msp20I	TGGCCA	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	103
MspI	CCGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	2 cut(s)	133, 164
NlaIII	CATG	1 cut(s)	229
NlaIV	GGNNCC	1 cut(s)	54
PceI	AGGCCT	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	247, 319
Pfl23II	CGTACG	1 cut(s)	66
PkrI	GCNGC	7 cut(s)	102, 138, 160, 171, 186, 189, 280
Ppu21I	YACGTR	1 cut(s)	70
PspLI	CGTACG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	54
RsaI	GTAC	2 cut(s)	14, 68
RsaNI	GTAC	2 cut(s)	13, 67
SatI	GCNGC	7 cut(s)	101, 137, 159, 170, 185, 188, 279
SetI	ASST	7 cut(s)	51, 62, 72, 135, 270, 280, 315
SseBI	AGGCCT	1 cut(s)	77
SsiI	CCGC	5 cut(s)	37, 101, 158, 170, 188
SspMI	CTAG	1 cut(s)	352
StuI	AGGCCT	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	1 cut(s)	72
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	4 cut(s)	103, 161, 172, 190
TfiI	GAWTC	2 cut(s)	247, 319
TseI	GCWGC	3 cut(s)	136, 184, 278
TspDTI	ATGAA	1 cut(s)	275
XspI	CTAG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.