Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003739

Physical Location & Seq

Genomic Coordinates Forward (+)

5427567 .. 5442556

Gene Structure 14990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1067300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3075 bp

ATGTCCTGCATCCAAACCCCATTTCCCCCTGCAAATACCACCAAGAATTGCGCATTTCAAATCCCCATAGTTTTCCACAAGAGCCCATCAATGATATCCACTAGTTTGTGGAGAAACTTGGCTAAGCAGGTCATTTCCGGGAACCAGAGGTGTCGTCTGAATTCACAGTCTATTTCTAGAGCTTATAGCCTTCTGAGGTTTTCCCGGGAATCTGTTTTCTCGGAAAAGTTCAAGCCTTTTGAGACGGGTTCTTGCTTAAAGGGTTTTCCGGAGGTGGGTTTTTGCAGGAAAGGTGAGATTTCTTCAGGTGAGAGTTATATGGGGAATCCAAGTTTAGGGTCTGTGAGGAATCCGATTGGGTTTAATGGGTTTTGCCCCAAAGGGTATGCAAGCGTCGCGGAGGCGGTTTCTTCCACTGATGCCGAGGAGGATGTGTCTGTTGTTGATGAAGTTCAAGAGCTATTGCAGCAAATGAGTAAAGAGGGCAAGAGGCAGACGGATCATTGGCGGCGGATGCGGCAGAGGAGAGTGAGAGGAATGGGGCAGGCGAAGTACCTTGCGCTAAAGAGACGACAGATAAAGATTGAGACTGAAGCATGGGAACGGGCGGCGAAGGAGTATAGGGAGCTTATGATGGACATGTGTGAGCACAAGTTAGCTCCCAATTTGCCATACATGAAGTCTTTGTTTCTTGGTTGGTTTGAGCCTCTGCGCAATGCCATTGAACACGAGCAAAACCTGTGCCGGAAGGGGAAGAATAAGGCAGCCTACGCGCCTTATTTTGATCAGTTACCGGCTGATATGATGTCGGTTATTACAATGCATAAGCTGATGGGATTGTTGATGACTGGAGGCGAACATGGAACTTGCAGGGTGGTAGCAGCTGCTTGCACCATAGGTGAAGCCATTGAGCAGGAGGTTAGAATACACAATTTTTTGGAACAGACGAGAAAGAAAAAGGTCAACAAAGATGAGGAAAACCGAGGGTCTGATGATGTAATGAAGGAACAAGAGAAGCTGAATAAAAAGGTTACGAAATTGATGAAAAAGCAAAAACTGCGAGCAGTGAGACATATAGTGAGGAAATATGATGCTTCAAAACCCTGGAGCCTGGAAGCCAAGGCTAAGGTCGGCAGTCGTCTGATTGAACTGTTGATTCAAACGGCTTTTATACAACCTCCGGCCGATCAGTCCGCAGATTCTCCACCAGATATACGACCTGCATTTGTACACACACTTACGACTGCCACAAAAGATCCAAAGAATACCACCAGCAGAAGATTTGGTGTTATTCAATGCAACCCTCTTGTTCTCAAAGGCCTTGAGAAAACAGCAAGCCACATGGTGATTCCTTATATGCCAATGTTGGTACCACCAGTCAACTGGACAGGTTATGATAGAGGAGGTTACTTTTTTCTACCATCCTATGTCATGCGCACTCATGGAGCTAAACAGCAGCGTGAAGCAATTAAGAAGACCCCAAGGCAGCAACTGGAACCAGTTTTTAAGGCCCTGGACACACTTGGAAATACCAGATGGAGGGTTAATAAGAGGGTACTTAATGTTGTAGATAGAATATGGGCTAGTGGAGGCCGTCTCGCTGATTTGGTGGACCGTGATAATGTTCCATTACCAGATGAACCAGATACTGATGATGAAACACTGCTTAAGAAATGGAAATGGAAGGTGAAGTCTGCGAAGAAAGAGAACATGGAGAGGCATTCACAGCGTTGTGACTTGGAGCTTAAACTAACTGTAGCACGGAAGATGAAGGATGAAGAAGGTTTTTATTATCCACACAATCTTGACTTTCGGGGCCGTGCATATCCTATGCACCCATACTTAAATCATCTTGGTTCAGATCTATCCCGGGGTATTTTGGAGTTTGCAGAGGGACGCCCCCTTGGAAAGTCAGGCTTACGTTGGCTAAAGATACACTTGGCAAATCTGTATGGGAGCGGTGTGGACAAATTATCTCGCGAGGGTCGAATAGCATTTATAGAGAGTCATTTAGATGATATATTTGATTCTGTGGACAGACCACTAGAAGGAAGACGCTGGTGGTTGAAGGCAGAAGATCCATTTCAGTGCTTGGCTGTGTGCATTAACCTTGCGGAAGCTTTGAGAAGCTCTTCTCCAGAGACTTTTATTTCACATATTCCCATACATCAGGATGGCTCTTGCAATGGTTTACAACACTATGCTGCCCTTGGAAGAGACAAGTTGGGAGCAGCTGCCGTCAATCTTGTTGCAGGAGAGAAGCCTGCAGATGTATACTCAGGAATAGCTGCTAGGGTACTGGAAATCATGCGAAGGGATGCACAGAAGGATCCTGCAGTTTTTCCAGAGGCATTGCGTGCAAAAGTATTAGTAGATCAGGTGGATAGAAAATTGGTGAAACAGACCGTGATGACGTCAGTATATGGTGTCACTTACATCGGTGCTCGGGATCAAATCAAGAGGAGGTTGAAGGAACGCACTGCCATTTCAGATGACGTAGAGCTTTTTAGCTGTGCTTGTTATGCTGCAAAGATCACCTTAACTGCTCTGGGTGAGATGTTTGAAGCTGCACGAAGTATCATGAGCTGGCTTGGTGAATGTGCAAAAATAATTGCATCTGAAAATGAGCCAGTACGATGGACAACTCCGCTTGGACTTCCAGTTGTGCAACCTTACCGTAAATTCGGCAGGCATCTTATTAAAACTTCCCTTCAAGTTTTGACGTTACAGCAAGAAACAGAAAAGGTCATGGTCAAGAGGCAGCGGACAGCGTTCCCACCAAATTTTGTTCATTCCCTCGATAGTTCTCATATGATGATGACTGCGGTTTCCTGTAAAAGGGCAGGCTTAAACTTTGCAGGAGTTCATGACTCGTACTGGACACACGCTTGTGATGTGGATGAAATGAACAGAATACTTCGTGAAAAGTTTGTCGAACTATATGAGACTCCAATACTAGAGAATTTGTTGGAGAGCTTTCAGCAGTCCTTTCCCACATTAACTTTCCCTCCCTTGCCCGAGCGGGGTGACTTTGACTTAAGGGACGTGTTAGAGTCGCCTTATTTCTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

1025

Amino Acids

116.56

Weight (kDa)

9.27

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPOL_N	PF14700	191 - 510	4.7e-88	DNA-directed RNA polymerase N-terminal
RNA_pol	PF00940	633 - 998	7.2e-161	DNA-dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15700 AT5G15700
fragaria_vesca	FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120
malus_domestica	MD09G1076800.v1.1 MD15G1148800.v1.1 MD17G1067300.v1.1
prunus_persica	Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1
pyrus_communis	pycom09g00400 pycom17g06760
rosa_chinensis	RchiOBHm_Chr2g0164571
rosa_laevigata	RLG00000021466
rosa_multiflora	Rmu_co8270321.1_g000001 Rmu_sc0020353.1_g000005 Rmu_ssc0000076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086480
rosa_rugosa	Rorug02G0509000 Rorug02G0509100 Rorug02G0509100 Rorug02G0509200.1
rosa_samantha	Rh2AG576800 Rh2BG587900 Rh2CG558700 Rh2DG598500
rosa_wichuraiana	Rw2G047890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2417
Acc16I	TGCGCA	3 cut(s)	52, 713, 1436
Acc36I	ACCTGC	2 cut(s)	118, 1228
Acc65I	GGTACC	1 cut(s)	1369
AccB1I	GGYRCC	1 cut(s)	1369
AccBSI	CCGCTC	2 cut(s)	1959, 3022
AccI	GTMKAC	1 cut(s)	2274
AccII	CGCG	3 cut(s)	398, 773, 1980
AccIII	TCCGGA	1 cut(s)	268
AclWI	GGATC	6 cut(s)	507, 1250, 2072, 2324, 2337, 2457
AcoI	YGGCCR	1 cut(s)	1182
AcsI	RAATTY	4 cut(s)	160, 2681, 2782, 2962
AcuI	CTGAAG	2 cut(s)	288, 612
AcyI	GRCGYC	2 cut(s)	1897, 2414
AdeI	CACNNNGTG	1 cut(s)	1345
AfaI	GTAC	7 cut(s)	554, 1230, 1371, 1557, 2298, 2634, 2876
AfiI	CCNNNNNNNGG	6 cut(s)	275, 335, 1539, 2048, 2838, 3023
AflII	CTTAAG	2 cut(s)	1667, 3037
AflIII	ACRYGT	2 cut(s)	639, 3045
AhlI	ACTAGT	1 cut(s)	101
AjiI	CACGTC	1 cut(s)	3046
AjnI	CCWGG	3 cut(s)	1103, 1110, 1512
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AleI	CACNNNNGTG	1 cut(s)	2889
Alw21I	GWGCWC	2 cut(s)	651, 2446
Alw26I	GTCTC	8 cut(s)	236, 562, 581, 1063, 1601, 2135, 2211, 2939
AlwI	GGATC	6 cut(s)	507, 1250, 2072, 2324, 2337, 2457
AlwNI	CAGNNNCTG	2 cut(s)	1492, 1649
Ama87I	CYCGRG	4 cut(s)	204, 1869, 2445, 3017
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	5 cut(s)	1182, 1318, 1509, 1591, 1816
ApoI	RAATTY	4 cut(s)	160, 2681, 2782, 2962
Asp700I	GAANNNNTTC	1 cut(s)	2131
Asp718I	GGTACC	1 cut(s)	1369
AspLEI	GCGC	5 cut(s)	53, 562, 714, 775, 1437
AspS9I	GGNCC	3 cut(s)	1510, 1612, 1816
AsuC2I	CCSGG	5 cut(s)	139, 205, 206, 1870, 1871
AvaI	CYCGRG	4 cut(s)	204, 1869, 2445, 3017
AvaII	GGWCC	1 cut(s)	1612
BamHI	GGATCC	1 cut(s)	2329
BanI	GGYRCC	1 cut(s)	1369
BanII	GRGCYC	1 cut(s)	86
BauI	CACGAG	1 cut(s)	728
BbsI	GAAGAC	2 cut(s)	1481, 2059
Bbv12I	GWGCWC	2 cut(s)	651, 2446
BccI	CCATC	7 cut(s)	94, 628, 826, 1429, 1530, 2168, 2631
BceAI	ACGGC	4 cut(s)	1179, 1578, 1803, 2222
BciT130I	CCWGG	3 cut(s)	1105, 1112, 1514
BclI	TGATCA	1 cut(s)	784
BcnI	CCSGG	5 cut(s)	139, 205, 206, 1870, 1871
BcoDI	GTCTC	8 cut(s)	236, 562, 581, 1063, 1601, 2135, 2211, 2939
BcuI	ACTAGT	1 cut(s)	101
BfaI	CTAG	6 cut(s)	102, 177, 1584, 2045, 2292, 2957
BfmI	CTRYAG	3 cut(s)	1755, 2265, 2334
BfrI	CTTAAG	2 cut(s)	1667, 3037
BfuAI	ACCTGC	2 cut(s)	118, 1228
BglII	AGATCT	1 cut(s)	1861
BlpI	GCTNAGC	1 cut(s)	123
Bme1390I	CCNGG	8 cut(s)	139, 205, 206, 1105, 1112, 1514, 1870, 1871
Bme18I	GGWCC	1 cut(s)	1612
BmeT110I	CYCGRG	4 cut(s)	204, 1869, 2445, 3017
BmgBI	CACGTC	1 cut(s)	3046
BmgT120I	GGNCC	3 cut(s)	1510, 1612, 1816
BmiI	GGNNCC	6 cut(s)	143, 1109, 1371, 1497, 1817, 2331
BmrFI	CCNGG	8 cut(s)	139, 205, 206, 1105, 1112, 1514, 1870, 1871
BmsI	GCATC	7 cut(s)	18, 409, 504, 1081, 2308, 2624, 2701
BpiI	GAAGAC	2 cut(s)	1481, 2059
BplI	GAGNNNNNCTC	2 cut(s)	1581, 1613
BpmI	CTGGAG	3 cut(s)	870, 1126, 2121
Bpu10I	CCTNAGC	1 cut(s)	1125
Bpu1102I	GCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	1343
BpuMI	CCSGG	5 cut(s)	139, 205, 206, 1870, 1871
BsaHI	GRCGYC	2 cut(s)	1897, 2414
BsaWI	WCCGGW	1 cut(s)	268
BsaXI	ACNNNNNCTCC	4 cut(s)	419, 449, 2992, 3022
Bsc4I	CCNNNNNNNGG	6 cut(s)	275, 335, 1539, 2048, 2838, 3023
Bse118I	RCCGGY	1 cut(s)	793
Bse1I	ACTGG	9 cut(s)	853, 1376, 1388, 1497, 1499, 2304, 2630, 2660, 2882
Bse3DI	GCAATG	3 cut(s)	721, 2191, 2351
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	3 cut(s)	1105, 1112, 1514
BseGI	GGATG	8 cut(s)	9, 436, 519, 1421, 1780, 2179, 2323, 2905
BseLI	CCNNNNNNNGG	6 cut(s)	275, 335, 1539, 2048, 2838, 3023
BseMI	GCAATG	3 cut(s)	721, 2191, 2351
BseMII	CTCAG	2 cut(s)	185, 2292
BseNI	ACTGG	9 cut(s)	853, 1376, 1388, 1497, 1499, 2304, 2630, 2660, 2882
BseRI	GAGGAG	4 cut(s)	440, 538, 1416, 2476
BseX3I	CGGCCG	1 cut(s)	1182
BsgI	GTGCAG	1 cut(s)	2553
Bsh1236I	CGCG	3 cut(s)	398, 773, 1980
Bsh1285I	CGRYCG	1 cut(s)	1185
BshFI	GGCC	5 cut(s)	1184, 1320, 1511, 1593, 1818
BshNI	GGYRCC	1 cut(s)	1369
BsiEI	CGRYCG	1 cut(s)	1185
BsiHKAI	GWGCWC	2 cut(s)	651, 2446
BsiHKCI	CYCGRG	4 cut(s)	204, 1869, 2445, 3017
BsiSI	CCGG	7 cut(s)	138, 205, 269, 745, 794, 1181, 1870
BslFI	GGGAC	2 cut(s)	1908, 3056
BslI	CCNNNNNNNGG	6 cut(s)	275, 335, 1539, 2048, 2838, 3023
BsmAI	GTCTC	8 cut(s)	236, 562, 581, 1063, 1601, 2135, 2211, 2939
BsmBI	CGTCTC	3 cut(s)	236, 562, 1601
BsmFI	GGGAC	2 cut(s)	1908, 3056
BsmI	GAATGC	1 cut(s)	1720
BsnI	GGCC	5 cut(s)	1184, 1320, 1511, 1593, 1818
BsoBI	CYCGRG	4 cut(s)	204, 1869, 2445, 3017
Bsp1286I	GDGCHC	3 cut(s)	86, 651, 2446
Bsp13I	TCCGGA	1 cut(s)	268
Bsp1407I	TGTACA	1 cut(s)	1228
Bsp1720I	GCTNAGC	1 cut(s)	123
Bsp68I	TCGCGA	1 cut(s)	1980
BspANI	GGCC	5 cut(s)	1184, 1320, 1511, 1593, 1818
BspCNI	CTCAG	2 cut(s)	186, 2291
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	3 cut(s)	398, 773, 1980
BspHI	TCATGA	2 cut(s)	2580, 2866
BspLI	GGNNCC	6 cut(s)	143, 1109, 1371, 1497, 1817, 2331
BspMAI	CTGCAG	2 cut(s)	2269, 2338
BspMI	ACCTGC	2 cut(s)	118, 1228
BspPI	GGATC	6 cut(s)	507, 1250, 2072, 2324, 2337, 2457
BspQI	GCTCTTC	1 cut(s)	2137
BspT107I	GGYRCC	1 cut(s)	1369
BspTI	CTTAAG	2 cut(s)	1667, 3037
BsrBI	CCGCTC	2 cut(s)	1959, 3022
BsrDI	GCAATG	3 cut(s)	721, 2191, 2351
BsrFI	RCCGGY	1 cut(s)	793
BsrGI	TGTACA	1 cut(s)	1228
BsrI	ACTGG	9 cut(s)	853, 1376, 1388, 1497, 1499, 2304, 2630, 2660, 2882
BssAI	RCCGGY	1 cut(s)	793
BssNAI	GTATAC	1 cut(s)	2275
BssNI	GRCGYC	2 cut(s)	1897, 2414
BssSI	CACGAG	1 cut(s)	728
BssT1I	CCWWGG	4 cut(s)	1119, 1481, 1903, 2209
Bst1107I	GTATAC	1 cut(s)	2275
Bst2BI	CACGAG	1 cut(s)	728
Bst2UI	CCWGG	3 cut(s)	1105, 1112, 1514
Bst4CI	ACNGT	6 cut(s)	168, 1152, 1616, 1756, 2407, 2678
Bst6I	CTCTTC	2 cut(s)	2137, 2209
BstACI	GRCGYC	2 cut(s)	1897, 2414
BstAFI	CTTAAG	2 cut(s)	1667, 3037
BstAPI	GCANNNNNTGC	2 cut(s)	1057, 2357
BstAUI	TGTACA	1 cut(s)	1228
BstDEI	CTNAG	4 cut(s)	123, 194, 1125, 2278
BstENI	CCTNNNNNAGG	1 cut(s)	2836
BstF5I	GGATG	8 cut(s)	9, 436, 519, 1421, 1780, 2179, 2323, 2905
BstFNI	CGCG	3 cut(s)	398, 773, 1980
BstHHI	GCGC	5 cut(s)	53, 562, 714, 775, 1437
BstMAI	GTCTC	8 cut(s)	236, 562, 581, 1063, 1601, 2135, 2211, 2939
BstMCI	CGRYCG	1 cut(s)	1185
BstMWI	GCNNNNNNNGC	9 cut(s)	395, 466, 514, 517, 770, 1057, 1726, 2357, 2522
BstNI	CCWGG	3 cut(s)	1105, 1112, 1514
BstNSI	RCATGY	1 cut(s)	643
BstSCI	CCNGG	8 cut(s)	137, 203, 204, 1103, 1110, 1512, 1868, 1869
BstSFI	CTRYAG	3 cut(s)	1755, 2265, 2334
BstUI	CGCG	3 cut(s)	398, 773, 1980
BstV2I	GAAGAC	2 cut(s)	1481, 2059
BstX2I	RGATCY	4 cut(s)	1255, 1861, 2077, 2329
BstXI	CCANNNNNNTGG	2 cut(s)	1383, 2637
BstYI	RGATCY	4 cut(s)	1255, 1861, 2077, 2329
BstZ17I	GTATAC	1 cut(s)	2275
BstZI	CGGCCG	1 cut(s)	1182
BsuRI	GGCC	5 cut(s)	1184, 1320, 1511, 1593, 1818
BtrI	CACGTC	1 cut(s)	3046
BtsCI	GGATG	8 cut(s)	9, 436, 519, 1421, 1780, 2179, 2323, 2905
BtsI	GCAGTG	3 cut(s)	1071, 1661, 2478
BtsIMutI	CAGTG	5 cut(s)	414, 1071, 1661, 2093, 2478
BtuMI	TCGCGA	1 cut(s)	1980
BveI	ACCTGC	2 cut(s)	118, 1228
CaiI	CAGNNNCTG	2 cut(s)	1492, 1649
CciI	TCATGA	2 cut(s)	2580, 2866
CfoI	GCGC	5 cut(s)	53, 562, 714, 775, 1437
Cfr10I	RCCGGY	1 cut(s)	793
Cfr13I	GGNCC	3 cut(s)	1510, 1612, 1816
Cfr9I	CCCGGG	2 cut(s)	204, 1869
CseI	GACGC	3 cut(s)	382, 1905, 2064
Csp6I	GTAC	7 cut(s)	553, 1229, 1370, 1556, 2297, 2633, 2875
CviQI	GTAC	7 cut(s)	553, 1229, 1370, 1556, 2297, 2633, 2875
DdeI	CTNAG	4 cut(s)	123, 194, 1125, 2278
DraIII	CACNNNGTG	1 cut(s)	1345
EaeI	YGGCCR	1 cut(s)	1182
EagI	CGGCCG	1 cut(s)	1182
Eam1104I	CTCTTC	2 cut(s)	2137, 2209
EarI	CTCTTC	2 cut(s)	2137, 2209
EciI	GGCGGA	1 cut(s)	526
EclXI	CGGCCG	1 cut(s)	1182
Eco130I	CCWWGG	4 cut(s)	1119, 1481, 1903, 2209
Eco147I	AGGCCT	1 cut(s)	1320
Eco24I	GRGCYC	1 cut(s)	86
Eco32I	GATATC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	1612
Eco52I	CGGCCG	1 cut(s)	1182
Eco57I	CTGAAG	2 cut(s)	288, 612
Eco88I	CYCGRG	4 cut(s)	204, 1869, 2445, 3017
EcoNI	CCTNNNNNAGG	1 cut(s)	2836
EcoO109I	RGGNCCY	1 cut(s)	1510
EcoRI	GAATTC	1 cut(s)	160
EcoRII	CCWGG	3 cut(s)	1103, 1110, 1512
EcoRV	GATATC	1 cut(s)	96
EcoT14I	CCWWGG	4 cut(s)	1119, 1481, 1903, 2209
EcoT22I	ATGCAT	1 cut(s)	825
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	4 cut(s)	1119, 1481, 1903, 2209
Esp3I	CGTCTC	3 cut(s)	236, 562, 1601
FalI	AAGNNNNNCTT	6 cut(s)	1901, 1933, 1922, 1954, 2522, 2554
FaqI	GGGAC	2 cut(s)	1908, 3056
FauI	CCCGC	1 cut(s)	3015
FauNDI	CATATG	1 cut(s)	2811
FbaI	TGATCA	1 cut(s)	784
FblI	GTMKAC	1 cut(s)	2274
FokI	GGATG	7 cut(s)	443, 526, 1408, 1787, 2186, 2330, 2912
FriOI	GRGCYC	1 cut(s)	86
FspAI	RTGCGCAY	1 cut(s)	1436
FspBI	CTAG	6 cut(s)	102, 177, 1584, 2045, 2292, 2957
FspI	TGCGCA	3 cut(s)	52, 713, 1436
GlaI	GCGC	5 cut(s)	52, 561, 713, 774, 1436
GsuI	CTGGAG	3 cut(s)	870, 1126, 2121
HaeIII	GGCC	5 cut(s)	1184, 1320, 1511, 1593, 1818
HapII	CCGG	7 cut(s)	138, 205, 269, 745, 794, 1181, 1870
HgaI	GACGC	3 cut(s)	382, 1905, 2064
HhaI	GCGC	5 cut(s)	53, 562, 714, 775, 1437
Hin1I	GRCGYC	2 cut(s)	1897, 2414
Hin6I	GCGC	5 cut(s)	51, 560, 712, 773, 1435
HinP1I	GCGC	5 cut(s)	51, 560, 712, 773, 1435
HincII	GTYRAC	2 cut(s)	964, 1381
HindII	GTYRAC	2 cut(s)	964, 1381
HindIII	AAGCTT	1 cut(s)	2118
HpaII	CCGG	7 cut(s)	138, 205, 269, 745, 794, 1181, 1870
Hpy166II	GTNNAC	8 cut(s)	964, 1231, 1381, 1612, 1966, 2035, 2192, 2275
Hpy188I	TCNGA	9 cut(s)	159, 195, 223, 354, 991, 1143, 1861, 2491, 2620
Hpy8I	GTNNAC	8 cut(s)	964, 1231, 1381, 1612, 1966, 2035, 2192, 2275
Hpy99I	CGWCG	1 cut(s)	398
HpyCH4III	ACNGT	6 cut(s)	168, 1152, 1616, 1756, 2407, 2678
HpyCH4IV	ACGT	5 cut(s)	1921, 2414, 2496, 2723, 3045
HpyF10VI	GCNNNNNNNGC	9 cut(s)	395, 466, 514, 517, 770, 1057, 1726, 2357, 2522
HpyF3I	CTNAG	4 cut(s)	123, 194, 1125, 2278
HpySE526I	ACGT	5 cut(s)	1921, 2414, 2496, 2723, 3045
Hsp92I	GRCGYC	2 cut(s)	1897, 2414
HspAI	GCGC	5 cut(s)	51, 560, 712, 773, 1435
Kpn2I	TCCGGA	1 cut(s)	268
KpnI	GGTACC	1 cut(s)	1373
Ksp22I	TGATCA	1 cut(s)	784
LguI	GCTCTTC	1 cut(s)	2137
LmnI	GCTCC	7 cut(s)	625, 664, 1107, 1445, 1741, 1956, 2228
LweI	GCATC	7 cut(s)	18, 409, 504, 1081, 2308, 2624, 2701
MaeI	CTAG	6 cut(s)	102, 177, 1584, 2045, 2292, 2957
MaeII	ACGT	5 cut(s)	1921, 2414, 2496, 2723, 3045
MaeIII	GTNAC	7 cut(s)	789, 1030, 1406, 1733, 2428, 2724, 3026
MbiI	CCGCTC	2 cut(s)	1959, 3022
MflI	RGATCY	4 cut(s)	1255, 1861, 2077, 2329
MhlI	GDGCHC	3 cut(s)	86, 651, 2446
MlyI	GAGTC	4 cut(s)	2014, 2864, 2941, 3062
MmeI	TCCRAC	1 cut(s)	2949
Mph1103I	ATGCAT	1 cut(s)	825
MroI	TCCGGA	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	2131
MslI	CAYNNNNRTG	4 cut(s)	2013, 2086, 2172, 2889
MspA1I	CMGCKG	3 cut(s)	884, 2234, 2764
MspCI	CTTAAG	2 cut(s)	1667, 3037
MspI	CCGG	7 cut(s)	138, 205, 269, 745, 794, 1181, 1870
MspR9I	CCNGG	8 cut(s)	139, 205, 206, 1105, 1112, 1514, 1870, 1871
Mva1269I	GAATGC	1 cut(s)	1720
MvaI	CCWGG	3 cut(s)	1105, 1112, 1514
MvnI	CGCG	3 cut(s)	398, 773, 1980
MwoI	GCNNNNNNNGC	9 cut(s)	395, 466, 514, 517, 770, 1057, 1726, 2357, 2522
NciI	CCSGG	5 cut(s)	139, 205, 206, 1870, 1871
NdeI	CATATG	1 cut(s)	2811
NlaIV	GGNNCC	6 cut(s)	143, 1109, 1371, 1497, 1817, 2331
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	3 cut(s)	1733, 2428, 3026
NruI	TCGCGA	1 cut(s)	1980
NsbI	TGCGCA	3 cut(s)	52, 713, 1436
NsiI	ATGCAT	1 cut(s)	825
NspI	RCATGY	1 cut(s)	643
OliI	CACNNNNGTG	1 cut(s)	2889
PagI	TCATGA	2 cut(s)	2580, 2866
PceI	AGGCCT	1 cut(s)	1320
PciI	ACATGT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	2137
PcsI	WCGNNNNNNNCGW	1 cut(s)	1984
PctI	GAATGC	1 cut(s)	1720
PdmI	GAANNNNTTC	1 cut(s)	2131
PfeI	GAWTC	7 cut(s)	209, 325, 349, 1156, 1199, 1348, 2027
PfoI	TCCNGGA	1 cut(s)	137
PleI	GAGTC	4 cut(s)	2013, 2864, 2941, 3061
PpsI	GAGTC	4 cut(s)	2013, 2864, 2941, 3061
PscI	ACATGT	1 cut(s)	639
Psp6I	CCWGG	3 cut(s)	1103, 1110, 1512
PspGI	CCWGG	3 cut(s)	1103, 1110, 1512
PspN4I	GGNNCC	6 cut(s)	143, 1109, 1371, 1497, 1817, 2331
PspPI	GGNCC	3 cut(s)	1510, 1612, 1816
PstI	CTGCAG	2 cut(s)	2269, 2338
PstNI	CAGNNNCTG	2 cut(s)	1492, 1649
PsuI	RGATCY	4 cut(s)	1255, 1861, 2077, 2329
PvuII	CAGCTG	2 cut(s)	884, 2234
RruI	TCGCGA	1 cut(s)	1980
RsaI	GTAC	7 cut(s)	554, 1230, 1371, 1557, 2298, 2634, 2876
RsaNI	GTAC	7 cut(s)	553, 1229, 1370, 1556, 2297, 2633, 2875
RseI	CAYNNNNRTG	4 cut(s)	2013, 2086, 2172, 2889
SapI	GCTCTTC	1 cut(s)	2137
Sau96I	GGNCC	3 cut(s)	1510, 1612, 1816
SchI	GAGTC	4 cut(s)	2014, 2864, 2941, 3062
ScrFI	CCNGG	8 cut(s)	139, 205, 206, 1105, 1112, 1514, 1870, 1871
SduI	GDGCHC	3 cut(s)	86, 651, 2446
SfaNI	GCATC	7 cut(s)	18, 409, 504, 1081, 2308, 2624, 2701
SfcI	CTRYAG	3 cut(s)	1755, 2265, 2334
SinI	GGWCC	1 cut(s)	1612
SmaI	CCCGGG	2 cut(s)	206, 1871
SmiMI	CAYNNNNRTG	4 cut(s)	2013, 2086, 2172, 2889
SmlI	CTYRAG	3 cut(s)	1322, 1667, 3037
SmoI	CTYRAG	3 cut(s)	1322, 1667, 3037
SpeI	ACTAGT	1 cut(s)	101
SseBI	AGGCCT	1 cut(s)	1320
SspMI	CTAG	6 cut(s)	102, 177, 1584, 2045, 2292, 2957
StuI	AGGCCT	1 cut(s)	1320
StyD4I	CCNGG	8 cut(s)	137, 203, 204, 1103, 1110, 1512, 1868, 1869
StyI	CCWWGG	4 cut(s)	1119, 1481, 1903, 2209
TaaI	ACNGT	6 cut(s)	168, 1152, 1616, 1756, 2407, 2678
TaiI	ACGT	5 cut(s)	1924, 2417, 2499, 2726, 3048
TaqI	TCGA	3 cut(s)	1987, 2799, 2934
TatI	WGTACW	1 cut(s)	1228
TauI	GCSGC	3 cut(s)	511, 520, 611
TfiI	GAWTC	7 cut(s)	209, 325, 349, 1156, 1199, 1348, 2027
TscAI	CASTG	5 cut(s)	421, 1071, 1668, 2093, 2485
TseFI	GTSAC	3 cut(s)	1733, 2428, 3026
Tsp45I	GTSAC	3 cut(s)	1733, 2428, 3026
TspGWI	ACGGA	2 cut(s)	512, 1777
TspMI	CCCGGG	2 cut(s)	204, 1869
TspRI	CASTG	5 cut(s)	421, 1071, 1668, 2093, 2485
Vha464I	CTTAAG	2 cut(s)	1667, 3037
VpaK11BI	GGWCC	1 cut(s)	1612
XagI	CCTNNNNNAGG	1 cut(s)	2836
XapI	RAATTY	4 cut(s)	160, 2681, 2782, 2962
XbaI	TCTAGA	1 cut(s)	176
XceI	RCATGY	1 cut(s)	643
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1380
XmaI	CCCGGG	2 cut(s)	204, 1869
XmiI	GTMKAC	1 cut(s)	2274
XmnI	GAANNNNTTC	1 cut(s)	2131
XspI	CTAG	6 cut(s)	102, 177, 1584, 2045, 2292, 2957
ZraI	GACGTC	1 cut(s)	2415
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.