Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003739

Physical Location & Seq

Genomic Coordinates Reverse (-)

83075235 .. 83090901

Gene Structure 15667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG598500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2742 bp

ATGTCCATCACCCAAACCCCACCACCACCACTCTCCCCTGCAAATCTCACCACCAAGGCTTTTGCTTTTCGAAGCCCTATTATTCCCCCCCAAAACCCATCAATGATATCAACCGCTGTGTGGAGAAGCTTCGCTAAACAAGCCATTTCCAGAGCCCAGAGGCTCCCCCTTAAACCTCAATCTCTTTCACGAGCTTATACCCTTCCGGGTTTTTGCCAAAGATCGAGTTTTCATGAAAATTTCAAGCCCATTTTGCTAAGTTCTTGCTCAAATTTTGTGGGTTTTCGCCGAAATGATCATATGCACAAGCCCGGTTTTGGGTCTCTGAATCGAGTTGGGGTCAGTGATTTCTGCCCCAAAGGGTATGCTAGTGTAGCTGAGGCGGTTTCCTCCACTGATGCTGAGGAAGAGGTGTCTGTTGTTGACGGGCTTCAAGAAATATTGCAGGAGATGAGAAAAGAGGATAGGAGGCAGGCACAGTATAGGCGGCGGAGCCGGCAGGCTAGGCAGAGAGGAATGGGGCAAGGGAAGTACCTAATGCTTAAGAGGAGGCAGATAAAGATTGAGACCGAAGCGTGGGAGAAGGCCGCGAAAGAGTACAGGGAGCTTTTGATGGATATGTGTGAGCAGAAGCTGGCACCCAATTTGCCATATATGAAGTCTTTGTTCCTTGGTTGGTTTGAGCCTTTGTGTAATGCCATTACCAAGGAGCAAGACTTGTGCCACCAAGGGAAGAATAAGGCGGCTTATGGTCCATATATGGATAAGTTACCGGCTGATATGATGTCGGTTATTACAATGCATAAGTTGATGGGGTTGCTGATGACCGGCGAGCATGGTAGTTGCAGGGTTGTATCGGCTGCTTGCACCATTGGTGAAGCCATAGAGCAGGAGGTTAGAATACACAACTTCTTGGAAAGGACAAAAAAGAAAAAGGTTGGTAAAGATCAGGAAACCGGAGAATCTGATGCTATGATGAAGGAAAATGAGAAGCTGAATAAAAAGGTCACAAATTTGATGAAAAAACAAAAAATGCAAGCAGTGAGGCACATAGTGAGGGGACATGATGATTCCAAAGGCTGGAGCCAGGAAGCAAAGGCTAAGGTTGGCAGTCGTTTGATTGAATTGCTGACCCAAACAGCTTTTATACAACCTCCGGCTAATCAGTTAGGGGACGGTCCGCTGGACATACGACCTGCATTTGTGCACACATTTAGGACTGTGAGCAAAGATGCAAAGAACAGTAGCAGAAGATATGGTGTTATTGAATGTGATCCTCTCGTTCTCAAAGGGCTTGAGAGAACAGCAAGGCACATGGTGATTCCTTATATGCCCATGTTGGTACCCCCACTCAATTGGACAGGTTATGACAAAGGAGGGCACTTTTTCCTACCGTCATATGTCATGCGCATTCATGGAGCTAAACAGCAGCGTGAAGCAGTTAAGAGGACCCCCAGGGAACAACTAGAACCAGTTTTTAAGGCCCTGGACACTCTTGGGAATACCAGATGGAGGGTTAATAAGAGGGTACTTAATGTTGTAGATAGGATATGGGCTAGTGGAGGCCGTCTTGCTGATTTGGTGGACCGCAGTGATGTTCCTTTACCAGAGAAACCAGATACTGAAGATGAAACATTGCTTAAAAAATGGAAGTGGAAAGTGACCTCTGTGAAGAAAGAGAACAGGGAGAGACATGCACAGCGTTGTGACATAGAACTTAAACTTGCTGTAGCACGGAAAATGAAGGATGAAGAAGGATTTTACTTTCCACACAATCTTGACTTCCGGGGCCGTGCATATCCTATGCACCCATACTTGAACCATCTCGGTTCAGATCTTTGCCGGGGTATTTTAGAGTTTGCAGAGGGACGCCCTCTTGGAAAGTCAGGCTTACATTGGCTGAAGATACACTTGGCAAATCTATATGCTGGTGGTGTGGACAAATTATCTCTTGAGGGTCGACTAGCATTTACTGAGAATCATTTGGATGATATATTTGATTCTGTGGACAGACCACTAGAAGGAAGGCGCTGGTGGTTGAAGGCAGAAGATCCATTTCAGTGCTTGGCTGTGTGCATTAACCTCTCTGAAGCTCTAAGAAGCTCTTCTCCAGAGACATTTATATCACATATTCCTGTACATCAGGATGGCTCTTGCAATGGCTTACAACACTATGCTGCCCTTGGAAGGGACAAGTTAGGAGCAGGTGCTGTCAATCTGGTTGCAGGAGAGAAACCTGCTGATGTTTACTCAGGAATAGCTGCTAGGGTTCTGGCTATCATGCAGAGTGATGCACAGAAGGATCCTGAAGTTTTTCCTGATGCATTGCGTGCAAGAGTGTTAGTTAATCAGGTGGATAGGAAGTTGGTAAAGCAGACTGTGATGACGTCAGTATATGGTGTCACTTATATTGGTGCTCGGGATCAAATCAAGAGGAGGTTGAAGGAACGTGGTGCCATTTCAGATGATGCAGAGGTCTTTGGTTGTGCTTGTTATGCTGCGAAGGTCACCTTAACTGCTTTGGGGGAGATGTTTGAAGCTGCTCGAAGTATCATGAGCTGGCTTGGAGATTGCGCAAAAATAATTGCATCCGAAAATGAGCCAGTACGGTGGACAACTCCACTTGGACTTCCAGTTGTGCAACCTTACCGCAAATTTGGAAGGCATCTTATTAAAACTTCCCTTCAAATTTTGACATTACAACGAGAAACAGAAAAGGTACTTCACTTGTCTCTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

913

Amino Acids

103.22

Weight (kDa)

9.44

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPOL_N	PF14700	184 - 501	3.9e-86	DNA-directed RNA polymerase N-terminal
RNA_pol	PF00940	624 - 905	2.7e-112	DNA-dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15700 AT5G15700
fragaria_vesca	FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120
malus_domestica	MD09G1076800.v1.1 MD15G1148800.v1.1 MD17G1067300.v1.1
prunus_persica	Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1
pyrus_communis	pycom09g00400 pycom17g06760
rosa_chinensis	RchiOBHm_Chr2g0164571
rosa_laevigata	RLG00000021466
rosa_multiflora	Rmu_co8270321.1_g000001 Rmu_sc0020353.1_g000005 Rmu_ssc0000076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086480
rosa_rugosa	Rorug02G0509000 Rorug02G0509100 Rorug02G0509100 Rorug02G0509200.1
rosa_samantha	Rh2AG576800 Rh2BG587900 Rh2CG558700 Rh2DG598500
rosa_wichuraiana	Rw2G047890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2195
AatII	GACGTC	1 cut(s)	2390
Acc16I	TGCGCA	2 cut(s)	1409, 2575
Acc36I	ACCTGC	3 cut(s)	1204, 2195, 2245
Acc65I	GGTACC	1 cut(s)	1342
AccB1I	GGYRCC	3 cut(s)	637, 1342, 2453
AccB7I	CCANNNNNTGG	1 cut(s)	1080
AccI	GTMKAC	1 cut(s)	1960
AccII	CGCG	1 cut(s)	590
AciI	CCGC	9 cut(s)	114, 383, 487, 490, 588, 743, 1181, 1588, 2650
AclWI	GGATC	5 cut(s)	1268, 2045, 2297, 2310, 2430
AcsI	RAATTY	5 cut(s)	238, 271, 1012, 2654, 2688
AcuI	CTGAAG	4 cut(s)	1644, 1922, 2109, 2328
AcyI	GRCGYC	2 cut(s)	1870, 2387
AdeI	CACNNNGTG	2 cut(s)	1054, 1318
AfaI	GTAC	7 cut(s)	533, 599, 1344, 1530, 2139, 2607, 2721
AfiI	CCNNNNNNNGG	9 cut(s)	120, 317, 318, 576, 1080, 1512, 2021, 2187, 2188
AflII	CTTAAG	1 cut(s)	542
AgsI	TTSAA	9 cut(s)	244, 434, 1124, 1268, 1819, 2041, 2443, 2537, 2687
AjnI	CCWGG	3 cut(s)	1086, 1454, 1485
AjuI	GAANNNNNNNTTGG	2 cut(s)	1895, 1927
Alw21I	GWGCWC	2 cut(s)	1209, 2419
Alw26I	GTCTC	5 cut(s)	327, 560, 1684, 2108, 2736
Alw44I	GTGCAC	1 cut(s)	1205
AlwI	GGATC	5 cut(s)	1268, 2045, 2297, 2310, 2430
AlwNI	CAGNNNCTG	3 cut(s)	634, 1622, 2210
Ama87I	CYCGRG	1 cut(s)	2418
AoxI	GGCC	4 cut(s)	585, 1482, 1564, 1789
ApaLI	GTGCAC	1 cut(s)	1205
ApeKI	GCWGC	6 cut(s)	860, 1429, 2177, 2261, 2498, 2540
ApoI	RAATTY	5 cut(s)	238, 271, 1012, 2654, 2688
Asp700I	GAANNNNTTC	2 cut(s)	2104, 2313
Asp718I	GGTACC	1 cut(s)	1342
AspLEI	GCGC	3 cut(s)	1410, 2031, 2576
AspS9I	GGNCC	6 cut(s)	752, 1178, 1449, 1483, 1585, 1789
AsuC2I	CCSGG	4 cut(s)	207, 312, 1787, 1844
AsuHPI	GGTGA	4 cut(s)	40, 887, 1330, 2500
AsuII	TTCGAA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	2418
AvaII	GGWCC	4 cut(s)	752, 1178, 1449, 1585
BaeGI	GKGCMC	2 cut(s)	1209, 1383
BamHI	GGATCC	1 cut(s)	2302
BanI	GGYRCC	3 cut(s)	637, 1342, 2453
BanII	GRGCYC	1 cut(s)	157
BauI	CACGAG	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	1209, 2419
BbvCI	CCTCAGC	2 cut(s)	378, 402
BbvI	GCAGC	6 cut(s)	847, 1441, 2164, 2248, 2485, 2527
BccI	CCATC	7 cut(s)	14, 106, 607, 805, 1503, 1830, 2141
BceAI	ACGGC	2 cut(s)	1551, 1776
BciT130I	CCWGG	3 cut(s)	1088, 1456, 1487
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	4 cut(s)	207, 312, 1787, 1844
BcoDI	GTCTC	5 cut(s)	327, 560, 1684, 2108, 2736
BfaI	CTAG	7 cut(s)	369, 504, 1466, 1557, 1964, 2018, 2265
BfmI	CTRYAG	1 cut(s)	1728
BfoI	RGCGCY	1 cut(s)	2032
BfrI	CTTAAG	1 cut(s)	542
BfuAI	ACCTGC	3 cut(s)	1204, 2195, 2245
BglII	AGATCT	1 cut(s)	1834
BisI	GCNGC	9 cut(s)	488, 588, 744, 861, 1430, 2178, 2262, 2499, 2541
BlsI	GCNGC	9 cut(s)	489, 589, 745, 862, 1431, 2179, 2263, 2500, 2542
Bme1390I	CCNGG	7 cut(s)	207, 312, 1088, 1456, 1487, 1787, 1844
Bme18I	GGWCC	4 cut(s)	752, 1178, 1449, 1585
BmeT110I	CYCGRG	1 cut(s)	2418
BmgT120I	GGNCC	6 cut(s)	752, 1178, 1449, 1483, 1585, 1789
BmiI	GGNNCC	9 cut(s)	164, 494, 639, 1085, 1344, 1451, 1790, 2304, 2455
BmrFI	CCNGG	7 cut(s)	207, 312, 1088, 1456, 1487, 1787, 1844
BmsI	GCATC	8 cut(s)	388, 958, 1222, 2281, 2311, 2458, 2597, 2674
BpmI	CTGGAG	2 cut(s)	1102, 2094
Bpu10I	CCTNAGC	3 cut(s)	378, 402, 1101
Bpu14I	TTCGAA	1 cut(s)	70
BpuEI	CTTGAG	2 cut(s)	1316, 1973
BpuMI	CCSGG	4 cut(s)	207, 312, 1787, 1844
BsaHI	GRCGYC	2 cut(s)	1870, 2387
BsaI	GGTCTC	2 cut(s)	327, 560
BsaWI	WCCGGW	1 cut(s)	956
Bsc4I	CCNNNNNNNGG	9 cut(s)	120, 317, 318, 576, 1080, 1512, 2021, 2187, 2188
Bse118I	RCCGGY	3 cut(s)	495, 772, 827
Bse1I	ACTGG	3 cut(s)	1472, 2603, 2633
Bse3DI	GCAATG	3 cut(s)	1634, 2164, 2324
BseBI	CCWGG	3 cut(s)	1088, 1456, 1487
BseGI	GGATG	4 cut(s)	1753, 1993, 2152, 2588
BseLI	CCNNNNNNNGG	9 cut(s)	120, 317, 318, 576, 1080, 1512, 2021, 2187, 2188
BseMI	GCAATG	3 cut(s)	1634, 2164, 2324
BseMII	CTCAG	4 cut(s)	369, 393, 1965, 2265
BseNI	ACTGG	3 cut(s)	1472, 2603, 2633
BseRI	GAGGAG	2 cut(s)	562, 2449
BseSI	GKGCMC	2 cut(s)	1209, 1383
BseXI	GCAGC	6 cut(s)	847, 1441, 2164, 2248, 2485, 2527
Bsh1236I	CGCG	1 cut(s)	590
BshFI	GGCC	4 cut(s)	587, 1484, 1566, 1791
BshNI	GGYRCC	3 cut(s)	637, 1342, 2453
BsiHKAI	GWGCWC	2 cut(s)	1209, 2419
BsiHKCI	CYCGRG	1 cut(s)	2418
BsiSI	CCGG	9 cut(s)	206, 312, 496, 773, 828, 957, 1157, 1786, 1843
BslFI	GGGAC	4 cut(s)	1074, 1187, 1881, 2204
BslI	CCNNNNNNNGG	9 cut(s)	120, 317, 318, 576, 1080, 1512, 2021, 2187, 2188
BsmAI	GTCTC	5 cut(s)	327, 560, 1684, 2108, 2736
BsmFI	GGGAC	4 cut(s)	1074, 1187, 1881, 2204
BsmI	GAATGC	1 cut(s)	1410
BsnI	GGCC	4 cut(s)	587, 1484, 1566, 1791
Bso31I	GGTCTC	2 cut(s)	327, 560
BsoBI	CYCGRG	1 cut(s)	2418
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1286I	GDGCHC	4 cut(s)	157, 1209, 1383, 2419
Bsp1407I	TGTACA	1 cut(s)	2137
Bsp143I	GATC	8 cut(s)	221, 295, 946, 1273, 1834, 2050, 2302, 2422
BspACI	CCGC	9 cut(s)	114, 383, 487, 490, 588, 743, 1181, 1588, 2650
BspANI	GGCC	4 cut(s)	587, 1484, 1566, 1791
BspCNI	CTCAG	4 cut(s)	370, 394, 1966, 2264
BspFNI	CGCG	1 cut(s)	590
BspHI	TCATGA	2 cut(s)	232, 2553
BspLI	GGNNCC	9 cut(s)	164, 494, 639, 1085, 1344, 1451, 1790, 2304, 2455
BspMI	ACCTGC	3 cut(s)	1204, 2195, 2245
BspPI	GGATC	5 cut(s)	1268, 2045, 2297, 2310, 2430
BspQI	GCTCTTC	1 cut(s)	2110
BspT104I	TTCGAA	1 cut(s)	70
BspT107I	GGYRCC	3 cut(s)	637, 1342, 2453
BspTI	CTTAAG	1 cut(s)	542
BspTNI	GGTCTC	2 cut(s)	327, 560
BsrDI	GCAATG	3 cut(s)	1634, 2164, 2324
BsrFI	RCCGGY	3 cut(s)	495, 772, 827
BsrGI	TGTACA	1 cut(s)	2137
BsrI	ACTGG	3 cut(s)	1472, 2603, 2633
BssAI	RCCGGY	3 cut(s)	495, 772, 827
BssMI	GATC	8 cut(s)	221, 295, 946, 1273, 1834, 2050, 2302, 2422
BssNI	GRCGYC	2 cut(s)	1870, 2387
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	5 cut(s)	54, 670, 705, 727, 2182
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	3 cut(s)	1088, 1456, 1487
Bst4CI	ACNGT	7 cut(s)	480, 1178, 1222, 1244, 1395, 2380, 2610
Bst6I	CTCTTC	2 cut(s)	402, 2110
BstACI	GRCGYC	2 cut(s)	1870, 2387
BstAFI	CTTAAG	1 cut(s)	542
BstAPI	GCANNNNNTGC	1 cut(s)	2330
BstAUI	TGTACA	1 cut(s)	2137
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	9 cut(s)	474, 497, 501, 636, 833, 865, 1038, 2331, 2561
BstDEI	CTNAG	7 cut(s)	257, 378, 402, 1101, 1974, 2096, 2251
BstEII	GGTNACC	1 cut(s)	2506
BstF5I	GGATG	4 cut(s)	1753, 1993, 2152, 2588
BstFNI	CGCG	1 cut(s)	590
BstH2I	RGCGCY	1 cut(s)	2032
BstHHI	GCGC	3 cut(s)	1410, 2031, 2576
BstKTI	GATC	8 cut(s)	224, 298, 949, 1276, 1837, 2053, 2305, 2425
BstMAI	GTCTC	5 cut(s)	327, 560, 1684, 2108, 2736
BstMBI	GATC	8 cut(s)	221, 295, 946, 1273, 1834, 2050, 2302, 2422
BstMWI	GCNNNNNNNGC	7 cut(s)	140, 253, 374, 496, 505, 2330, 2495
BstNI	CCWGG	3 cut(s)	1088, 1456, 1487
BstNSI	RCATGY	1 cut(s)	1697
BstPI	GGTNACC	1 cut(s)	2506
BstSCI	CCNGG	7 cut(s)	205, 310, 1086, 1454, 1485, 1785, 1842
BstSFI	CTRYAG	1 cut(s)	1728
BstSLI	GKGCMC	2 cut(s)	1209, 1383
BstUI	CGCG	1 cut(s)	590
BstV1I	GCAGC	6 cut(s)	847, 1441, 2164, 2248, 2485, 2527
BstX2I	RGATCY	3 cut(s)	1834, 2050, 2302
BstXI	CCANNNNNNTGG	2 cut(s)	1356, 2610
BstYI	RGATCY	3 cut(s)	1834, 2050, 2302
BsuRI	GGCC	4 cut(s)	587, 1484, 1566, 1791
BtsCI	GGATG	4 cut(s)	1753, 1993, 2152, 2588
BtsI	GCAGTG	2 cut(s)	1047, 1597
BtsIMutI	CAGTG	5 cut(s)	349, 393, 1047, 1597, 2066
BveI	ACCTGC	3 cut(s)	1204, 2195, 2245
Cac8I	GCNNGC	9 cut(s)	474, 497, 501, 636, 833, 865, 1038, 2331, 2561
CaiI	CAGNNNCTG	3 cut(s)	634, 1622, 2210
CciI	TCATGA	2 cut(s)	232, 2553
CfoI	GCGC	3 cut(s)	1410, 2031, 2576
Cfr10I	RCCGGY	3 cut(s)	495, 772, 827
Cfr13I	GGNCC	6 cut(s)	752, 1178, 1449, 1483, 1585, 1789
CpoI	CGGWCCG	1 cut(s)	1178
CseI	GACGC	1 cut(s)	1878
Csp6I	GTAC	7 cut(s)	532, 598, 1343, 1529, 2138, 2606, 2720
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CspI	CGGWCCG	1 cut(s)	1178
CviQI	GTAC	7 cut(s)	532, 598, 1343, 1529, 2138, 2606, 2720
DdeI	CTNAG	7 cut(s)	257, 378, 402, 1101, 1974, 2096, 2251
DpnI	GATC	8 cut(s)	223, 297, 948, 1275, 1836, 2052, 2304, 2424
DpnII	GATC	8 cut(s)	221, 295, 946, 1273, 1834, 2050, 2302, 2422
DraIII	CACNNNGTG	2 cut(s)	1054, 1318
Eam1104I	CTCTTC	2 cut(s)	402, 2110
EarI	CTCTTC	2 cut(s)	402, 2110
EciI	GGCGGA	1 cut(s)	505
Eco130I	CCWWGG	5 cut(s)	54, 670, 705, 727, 2182
Eco24I	GRGCYC	1 cut(s)	157
Eco31I	GGTCTC	2 cut(s)	327, 560
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	4 cut(s)	752, 1178, 1449, 1585
Eco57I	CTGAAG	4 cut(s)	1644, 1922, 2109, 2328
Eco88I	CYCGRG	1 cut(s)	2418
Eco91I	GGTNACC	1 cut(s)	2506
EcoO109I	RGGNCCY	2 cut(s)	1449, 1483
EcoO65I	GGTNACC	1 cut(s)	2506
EcoRII	CCWGG	3 cut(s)	1086, 1454, 1485
EcoRV	GATATC	1 cut(s)	108
EcoT14I	CCWWGG	5 cut(s)	54, 670, 705, 727, 2182
EcoT22I	ATGCAT	2 cut(s)	804, 2326
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	5 cut(s)	54, 670, 705, 727, 2182
FalI	AAGNNNNNCTT	8 cut(s)	1874, 1906, 1895, 1927, 2089, 2121, 2495, 2527
FaqI	GGGAC	4 cut(s)	1074, 1187, 1881, 2204
FauNDI	CATATG	2 cut(s)	300, 1399
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	1960
Fnu4HI	GCNGC	9 cut(s)	488, 588, 744, 861, 1430, 2178, 2262, 2499, 2541
FokI	GGATG	4 cut(s)	1760, 2000, 2159, 2575
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	9 cut(s)	488, 588, 744, 861, 1430, 2178, 2262, 2499, 2541
FspAI	RTGCGCAY	1 cut(s)	1409
FspBI	CTAG	7 cut(s)	369, 504, 1466, 1557, 1964, 2018, 2265
FspI	TGCGCA	2 cut(s)	1409, 2575
GlaI	GCGC	3 cut(s)	1409, 2030, 2575
GluI	GCNGC	9 cut(s)	488, 588, 744, 861, 1430, 2178, 2262, 2499, 2541
GsuI	CTGGAG	2 cut(s)	1102, 2094
HaeII	RGCGCY	1 cut(s)	2032
HaeIII	GGCC	4 cut(s)	587, 1484, 1566, 1791
HapII	CCGG	9 cut(s)	206, 312, 496, 773, 828, 957, 1157, 1786, 1843
HgaI	GACGC	1 cut(s)	1878
HhaI	GCGC	3 cut(s)	1410, 2031, 2576
Hin1I	GRCGYC	2 cut(s)	1870, 2387
Hin6I	GCGC	3 cut(s)	1408, 2029, 2574
HinP1I	GCGC	3 cut(s)	1408, 2029, 2574
HincII	GTYRAC	2 cut(s)	424, 1961
HindII	GTYRAC	2 cut(s)	424, 1961
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	6 cut(s)	328, 962, 1070, 1321, 1978, 2000
HpaII	CCGG	9 cut(s)	206, 312, 496, 773, 828, 957, 1157, 1786, 1843
HphI	GGTGA	4 cut(s)	40, 887, 1330, 2500
Hpy166II	GTNNAC	8 cut(s)	424, 1207, 1585, 1939, 1961, 2008, 2248, 2613
Hpy188I	TCNGA	6 cut(s)	327, 967, 1834, 2089, 2464, 2593
Hpy8I	GTNNAC	8 cut(s)	424, 1207, 1585, 1939, 1961, 2008, 2248, 2613
HpyCH4III	ACNGT	7 cut(s)	480, 1178, 1222, 1244, 1395, 2380, 2610
HpyCH4IV	ACGT	2 cut(s)	2387, 2449
HpyF10VI	GCNNNNNNNGC	7 cut(s)	140, 253, 374, 496, 505, 2330, 2495
HpyF3I	CTNAG	7 cut(s)	257, 378, 402, 1101, 1974, 2096, 2251
HpySE526I	ACGT	2 cut(s)	2387, 2449
Hsp92I	GRCGYC	2 cut(s)	1870, 2387
HspAI	GCGC	3 cut(s)	1408, 2029, 2574
KpnI	GGTACC	1 cut(s)	1346
KroI	GCCGGC	1 cut(s)	495
KroNI	GCCGGC	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	8 cut(s)	221, 295, 946, 1273, 1834, 2050, 2302, 2422
LguI	GCTCTTC	1 cut(s)	2110
LmnI	GCTCC	7 cut(s)	168, 492, 604, 709, 1083, 1418, 2201
Lsp1109I	GCAGC	6 cut(s)	847, 1441, 2164, 2248, 2485, 2527
LweI	GCATC	8 cut(s)	388, 958, 1222, 2281, 2311, 2458, 2597, 2674
MaeI	CTAG	7 cut(s)	369, 504, 1466, 1557, 1964, 2018, 2265
MaeII	ACGT	2 cut(s)	2387, 2449
MaeIII	GTNAC	6 cut(s)	768, 1006, 1660, 1706, 2401, 2506
MalI	GATC	8 cut(s)	223, 297, 948, 1275, 1836, 2052, 2304, 2424
MboI	GATC	8 cut(s)	221, 295, 946, 1273, 1834, 2050, 2302, 2422
MboII	GAAGA	9 cut(s)	419, 745, 1263, 1637, 1684, 1763, 1915, 2060, 2097
MfeI	CAATTG	1 cut(s)	1354
MflI	RGATCY	3 cut(s)	1834, 2050, 2302
MhlI	GDGCHC	4 cut(s)	157, 1209, 1383, 2419
Mph1103I	ATGCAT	2 cut(s)	804, 2326
MroNI	GCCGGC	1 cut(s)	495
MroXI	GAANNNNTTC	2 cut(s)	2104, 2313
MslI	CAYNNNNRTG	3 cut(s)	1986, 2059, 2145
MspA1I	CMGCKG	2 cut(s)	116, 1183
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	9 cut(s)	206, 312, 496, 773, 828, 957, 1157, 1786, 1843
MspR9I	CCNGG	7 cut(s)	207, 312, 1088, 1456, 1487, 1787, 1844
MunI	CAATTG	1 cut(s)	1354
Mva1269I	GAATGC	1 cut(s)	1410
MvaI	CCWGG	3 cut(s)	1088, 1456, 1487
MvnI	CGCG	1 cut(s)	590
MwoI	GCNNNNNNNGC	7 cut(s)	140, 253, 374, 496, 505, 2330, 2495
NaeI	GCCGGC	1 cut(s)	497
NciI	CCSGG	4 cut(s)	207, 312, 1787, 1844
NdeI	CATATG	2 cut(s)	300, 1399
NdeII	GATC	8 cut(s)	221, 295, 946, 1273, 1834, 2050, 2302, 2422
NgoMIV	GCCGGC	1 cut(s)	495
NlaIV	GGNNCC	9 cut(s)	164, 494, 639, 1085, 1344, 1451, 1790, 2304, 2455
NmuCI	GTSAC	5 cut(s)	1006, 1660, 1706, 2401, 2506
NsbI	TGCGCA	2 cut(s)	1409, 2575
NsiI	ATGCAT	2 cut(s)	804, 2326
NspI	RCATGY	1 cut(s)	1697
NspV	TTCGAA	1 cut(s)	70
PagI	TCATGA	2 cut(s)	232, 2553
PaqCI	CACCTGC	1 cut(s)	2195
PasI	CCCWGGG	1 cut(s)	1455
PciSI	GCTCTTC	1 cut(s)	2110
PctI	GAATGC	1 cut(s)	1410
PdiI	GCCGGC	1 cut(s)	497
PdmI	GAANNNNTTC	2 cut(s)	2104, 2313
PfeI	GAWTC	6 cut(s)	328, 962, 1070, 1321, 1978, 2000
PflMI	CCANNNNNTGG	1 cut(s)	1080
PkrI	GCNGC	9 cut(s)	489, 589, 745, 862, 1431, 2179, 2263, 2500, 2542
PpuMI	RGGWCCY	1 cut(s)	1449
Psp5II	RGGWCCY	1 cut(s)	1449
Psp6I	CCWGG	3 cut(s)	1086, 1454, 1485
PspEI	GGTNACC	1 cut(s)	2506
PspGI	CCWGG	3 cut(s)	1086, 1454, 1485
PspN4I	GGNNCC	9 cut(s)	164, 494, 639, 1085, 1344, 1451, 1790, 2304, 2455
PspPI	GGNCC	6 cut(s)	752, 1178, 1449, 1483, 1585, 1789
PspPPI	RGGWCCY	1 cut(s)	1449
PstNI	CAGNNNCTG	3 cut(s)	634, 1622, 2210
PsuI	RGATCY	3 cut(s)	1834, 2050, 2302
RsaI	GTAC	7 cut(s)	533, 599, 1344, 1530, 2139, 2607, 2721
RsaNI	GTAC	7 cut(s)	532, 598, 1343, 1529, 2138, 2606, 2720
RseI	CAYNNNNRTG	3 cut(s)	1986, 2059, 2145
Rsr2I	CGGWCCG	1 cut(s)	1178
RsrII	CGGWCCG	1 cut(s)	1178
SalI	GTCGAC	1 cut(s)	1959
SapI	GCTCTTC	1 cut(s)	2110
SatI	GCNGC	9 cut(s)	488, 588, 744, 861, 1430, 2178, 2262, 2499, 2541
Sau3AI	GATC	8 cut(s)	221, 295, 946, 1273, 1834, 2050, 2302, 2422
Sau96I	GGNCC	6 cut(s)	752, 1178, 1449, 1483, 1585, 1789
ScrFI	CCNGG	7 cut(s)	207, 312, 1088, 1456, 1487, 1787, 1844
SduI	GDGCHC	4 cut(s)	157, 1209, 1383, 2419
SfaNI	GCATC	8 cut(s)	388, 958, 1222, 2281, 2311, 2458, 2597, 2674
SfcI	CTRYAG	1 cut(s)	1728
SfuI	TTCGAA	1 cut(s)	70
SinI	GGWCC	4 cut(s)	752, 1178, 1449, 1585
SmiMI	CAYNNNNRTG	3 cut(s)	1986, 2059, 2145
SmlI	CTYRAG	3 cut(s)	542, 1295, 1952
SmoI	CTYRAG	3 cut(s)	542, 1295, 1952
SsiI	CCGC	9 cut(s)	114, 383, 487, 490, 588, 743, 1181, 1588, 2650
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	7 cut(s)	369, 504, 1466, 1557, 1964, 2018, 2265
StyD4I	CCNGG	7 cut(s)	205, 310, 1086, 1454, 1485, 1785, 1842
StyI	CCWWGG	5 cut(s)	54, 670, 705, 727, 2182
TaaI	ACNGT	7 cut(s)	480, 1178, 1222, 1244, 1395, 2380, 2610
TaiI	ACGT	2 cut(s)	2390, 2452
TaqI	TCGA	5 cut(s)	70, 224, 331, 1960, 2545
TaqII	GACCGA	1 cut(s)	584
TatI	WGTACW	2 cut(s)	597, 2137
TauI	GCSGC	3 cut(s)	490, 590, 746
TfiI	GAWTC	6 cut(s)	328, 962, 1070, 1321, 1978, 2000
TscAI	CASTG	5 cut(s)	349, 400, 1047, 1597, 2066
TseFI	GTSAC	5 cut(s)	1006, 1660, 1706, 2401, 2506
TseI	GCWGC	6 cut(s)	860, 1429, 2177, 2261, 2498, 2540
Tsp45I	GTSAC	5 cut(s)	1006, 1660, 1706, 2401, 2506
TspDTI	ATGAA	9 cut(s)	221, 249, 671, 992, 1034, 1403, 1644, 1757, 1764
TspGWI	ACGGA	1 cut(s)	1750
TspRI	CASTG	5 cut(s)	349, 400, 1047, 1597, 2066
Van91I	CCANNNNNTGG	1 cut(s)	1080
Vha464I	CTTAAG	1 cut(s)	542
VneI	GTGCAC	1 cut(s)	1205
VpaK11BI	GGWCC	4 cut(s)	752, 1178, 1449, 1585
XapI	RAATTY	5 cut(s)	238, 271, 1012, 2654, 2688
XceI	RCATGY	1 cut(s)	1697
XmiI	GTMKAC	1 cut(s)	1960
XmnI	GAANNNNTTC	2 cut(s)	2104, 2313
XspI	CTAG	7 cut(s)	369, 504, 1466, 1557, 1964, 2018, 2265
ZraI	GACGTC	1 cut(s)	2388
Zsp2I	ATGCAT	2 cut(s)	804, 2326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.