Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8270321.1

Orthogroup ID

OG0003739

Physical Location & Seq

Genomic Coordinates Forward (+)

111 .. 728

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8270321.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgcacaagcccagttttgggtctctgaatcgagttggggtcagtgatttttgccccaaagggtatgctagtgtagctgaggcggtttcgtccactgatgctgaggaagaggtgtctgttgttgatgggcttcaagaaatattgcaggagatgagaaaagaggataggaggcaggcacagtataggcggcggagccggcaggctaggcagagaggaatggggcaagggaagtacctaatgcttaagaggaggcagataaagattgagaccgaagcctgggagaaggccgcgaaagagtacagggagcttttgatggatatgtgtgagcagaagctggcacccaatttgccatatatgaagtctttgttccttggttggtttgagcctttgtgtaatgccattaccaaggagcaagacttgtgccgccaagggaagaataaggcggcttatggtccatatatggataagttaccggctgatatgatgtcggttattacaatgcataagttgatggggttgctgatgaccggcgagcatggtagttgcagggttgtatcggctgcttgcaccattggtgaagccatagagcaggaggtgtgtgaactgttacatggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

205

Amino Acids

23.29

Weight (kDa)

8.12

Isoelectric Point (pI)

68.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15700 AT5G15700
fragaria_vesca	FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120
malus_domestica	MD09G1076800.v1.1 MD15G1148800.v1.1 MD17G1067300.v1.1
prunus_persica	Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1
pyrus_communis	pycom09g00400 pycom17g06760
rosa_chinensis	RchiOBHm_Chr2g0164571
rosa_laevigata	RLG00000021466
rosa_multiflora	Rmu_co8270321.1_g000001 Rmu_sc0020353.1_g000005 Rmu_ssc0000076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086480
rosa_rugosa	Rorug02G0509000 Rorug02G0509100 Rorug02G0509100 Rorug02G0509200.1
rosa_samantha	Rh2AG576800 Rh2BG587900 Rh2CG558700 Rh2DG598500
rosa_wichuraiana	Rw2G047890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	337
AccII	CGCG	1 cut(s)	290
AciI	CCGC	6 cut(s)	83, 187, 190, 288, 424, 443
AfaI	GTAC	2 cut(s)	233, 299
AfiI	CCNNNNNNNGG	3 cut(s)	17, 18, 276
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	3 cut(s)	77, 307, 334
AluI	AGCT	3 cut(s)	77, 307, 334
Alw26I	GTCTC	2 cut(s)	27, 260
AlwNI	CAGNNNCTG	1 cut(s)	334
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	560
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	452
BanI	GGYRCC	1 cut(s)	337
BbvCI	CCTCAGC	2 cut(s)	78, 102
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	3 cut(s)	119, 307, 505
BciT130I	CCWGG	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	27, 260
BfaI	CTAG	2 cut(s)	69, 204
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	5 cut(s)	188, 288, 424, 444, 561
BlsI	GCNGC	5 cut(s)	189, 289, 425, 445, 562
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	194, 339
BmrFI	CCNGG	1 cut(s)	277
BmrI	ACTGGG	1 cut(s)	6
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	6
Bpu10I	CCTNAGC	2 cut(s)	78, 102
BsaI	GGTCTC	2 cut(s)	27, 260
BsaJI	CCNNGG	4 cut(s)	276, 370, 405, 427
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 18, 276
Bse118I	RCCGGY	3 cut(s)	195, 472, 527
Bse1I	ACTGG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	4 cut(s)	276, 370, 405, 427
BseLI	CCNNNNNNNGG	3 cut(s)	17, 18, 276
BseMII	CTCAG	2 cut(s)	69, 93
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	547
Bsh1236I	CGCG	1 cut(s)	290
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	1 cut(s)	337
BsiSI	CCGG	3 cut(s)	196, 473, 528
BslI	CCNNNNNNNGG	3 cut(s)	17, 18, 276
BsmAI	GTCTC	2 cut(s)	27, 260
BsnI	GGCC	1 cut(s)	287
Bso31I	GGTCTC	2 cut(s)	27, 260
BspACI	CCGC	6 cut(s)	83, 187, 190, 288, 424, 443
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	2 cut(s)	70, 94
BspFNI	CGCG	1 cut(s)	290
BspLI	GGNNCC	2 cut(s)	194, 339
BspT107I	GGYRCC	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	2 cut(s)	27, 260
BsrFI	RCCGGY	3 cut(s)	195, 472, 527
BsrI	ACTGG	1 cut(s)	12
BssAI	RCCGGY	3 cut(s)	195, 472, 527
BssECI	CCNNGG	4 cut(s)	276, 370, 405, 427
BssT1I	CCWWGG	3 cut(s)	370, 405, 427
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	2 cut(s)	180, 606
Bst6I	CTCTTC	1 cut(s)	102
BstAFI	CTTAAG	1 cut(s)	242
BstC8I	GCNNGC	6 cut(s)	174, 197, 201, 336, 533, 565
BstDEI	CTNAG	2 cut(s)	78, 102
BstFNI	CGCG	1 cut(s)	290
BstMAI	GTCTC	2 cut(s)	27, 260
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 196, 205
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BstUI	CGCG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	49, 93
Cac8I	GCNNGC	6 cut(s)	174, 197, 201, 336, 533, 565
CaiI	CAGNNNCTG	1 cut(s)	334
Cfr10I	RCCGGY	3 cut(s)	195, 472, 527
Cfr13I	GGNCC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	232, 298
CviAII	CATG	2 cut(s)	536, 611
CviQI	GTAC	2 cut(s)	232, 298
DdeI	CTNAG	2 cut(s)	78, 102
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	205
Eco130I	CCWWGG	3 cut(s)	370, 405, 427
Eco31I	GGTCTC	2 cut(s)	27, 260
Eco47I	GGWCC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	275
EcoT14I	CCWWGG	3 cut(s)	370, 405, 427
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	3 cut(s)	370, 405, 427
FaeI	CATG	2 cut(s)	539, 614
FatI	CATG	2 cut(s)	535, 610
Fnu4HI	GCNGC	5 cut(s)	188, 288, 424, 444, 561
Fsp4HI	GCNGC	5 cut(s)	188, 288, 424, 444, 561
FspBI	CTAG	2 cut(s)	69, 204
GluI	GCNGC	5 cut(s)	188, 288, 424, 444, 561
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	3 cut(s)	196, 473, 528
Hin1II	CATG	2 cut(s)	539, 614
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	3 cut(s)	196, 473, 528
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	2 cut(s)	93, 602
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	2 cut(s)	93, 602
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	180, 606
HpyCH4V	TGCA	5 cut(s)	4, 145, 502, 546, 567
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 196, 205
HpyF3I	CTNAG	2 cut(s)	78, 102
Hsp92II	CATG	2 cut(s)	539, 614
KroI	GCCGGC	1 cut(s)	195
KroNI	GCCGGC	1 cut(s)	197
LmnI	GCTCC	3 cut(s)	192, 304, 409
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	69, 204
MaeIII	GTNAC	2 cut(s)	468, 606
MboII	GAAGA	2 cut(s)	119, 445
MluCI	AATT	1 cut(s)	343
MnlI	CCTC	9 cut(s)	73, 97, 103, 154, 162, 206, 240, 243, 586
Mph1103I	ATGCAT	1 cut(s)	504
MroNI	GCCGGC	1 cut(s)	195
MseI	TTAA	2 cut(s)	243, 616
MspCI	CTTAAG	1 cut(s)	242
MspI	CCGG	3 cut(s)	196, 473, 528
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
MvnI	CGCG	1 cut(s)	290
MwoI	GCNNNNNNNGC	3 cut(s)	74, 196, 205
NaeI	GCCGGC	1 cut(s)	197
NgoMIV	GCCGGC	1 cut(s)	195
NlaIII	CATG	2 cut(s)	539, 614
NlaIV	GGNNCC	2 cut(s)	194, 339
NsiI	ATGCAT	1 cut(s)	504
PdiI	GCCGGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	5 cut(s)	189, 289, 425, 445, 562
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	194, 339
PspPI	GGNCC	1 cut(s)	452
PstNI	CAGNNNCTG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	233, 299
RsaNI	GTAC	2 cut(s)	232, 298
SaqAI	TTAA	2 cut(s)	243, 616
SatI	GCNGC	5 cut(s)	188, 288, 424, 444, 561
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	277
SetI	ASST	6 cut(s)	79, 114, 237, 309, 336, 597
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	343
SsiI	CCGC	6 cut(s)	83, 187, 190, 288, 424, 443
SspI	AATATT	1 cut(s)	141
SspMI	CTAG	2 cut(s)	69, 204
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	3 cut(s)	370, 405, 427
TaaI	ACNGT	2 cut(s)	180, 606
TaqI	TCGA	1 cut(s)	31
TaqII	GACCGA	1 cut(s)	284
TasI	AATT	1 cut(s)	343
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	4 cut(s)	190, 290, 426, 446
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	243, 616
Tru9I	TTAA	2 cut(s)	243, 616
TscAI	CASTG	2 cut(s)	49, 100
TseI	GCWGC	1 cut(s)	560
TspDTI	ATGAA	1 cut(s)	371
TspRI	CASTG	2 cut(s)	49, 100
Vha464I	CTTAAG	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	452
XspI	CTAG	2 cut(s)	69, 204
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.