Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020353.1

Orthogroup ID

OG0003739

Physical Location & Seq

Genomic Coordinates Reverse (-)

21327 .. 28892

Gene Structure 7566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020353.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2916 bp

atgtccatcacccaaaccccaccaccaccactctcccctgcaaatctcaccaccaaggcttttgcttttcgaagccctattattcccccccaaaacccatcaatgatatcaaccgctgtgtggagaagcttcgctaaacaagccatttccagagcccagaggccaccccttaaaccccattctctttcacgagctcatacccttctgggtttttgccaaagatcgagttttcatgaaaatctcaagcccattttgctaagttcttgctcaaattttgtgggttttcgccgaaatgatcatatgcacaagcccagttttgggtctctgaatcgagttggggtcagtgatttttgccccaaagggtatgctagtgtagctgaggcggtttcgtccactgatgctgaggaagaggtgtctgttgttgatgggcttcaagaaatattgcaggagatgagaaaagaggataggaggcaggcacagtataggcggcggagccggcaggctaggcagagaggaatggggcaagggaagtacctaatgcttaagaggaggcagataaagattgagaccgaagcgtgggagaaggccgccaaagagtacagggagcttttgatggatatgtgtgagcagaagctggcacccaatttgccatatatgaagtctttgttccttggttggtttgagcctttgtgtaatgccattaccaaggagcaagacttgtgccgccaagggaagaataaggcagcttatggtccatatatggataagttaccggctgatatgatgtcggttattacaatgcataagttgatggggttgctgatgaccggcgagcatggtagttgcagggttgtatcggctgcttgcaccattggtgaagccatagagcaggaggttagaatacacaacttcttggaaaggacaaaaaagaaaaaggttggtaaagatcaggaaaccggagaatctgatgctatgatgaaggaaaatgagaagctgaataaaaaggtcacaaatttgatgaaaaaacaaaaaatgcaagcagtgaggcacatagtgaggggacatgatgattcaaaaggctggagccaggaagcaaaggctaaggttggcagtcgtttgattgaattgctgacccaaacagcttttatacaacctccggctaatcagttaggggacggtccgctggacatacgacctgcatttgtgcacacatttaggactgtgagcaaagatgcaaagaacagtagcagaagatatggtgttattgaatgtgatcctctcgttctcaaagggcttgagagaacagcaaggcacatggtgattccttatatgcccatgttggtacccccactcaattggacaggttatgacaaaggagggcactttttcctaccgtcatatgtcatgcgcattcatggagctaaacagcagcgtgaagcagttaagaggacccccagggaacaactagaaccagttttcaaggccctggacactcttgggaataccagatggagggttaataagagggtacttaatgttgtagataggatatgggctagtggaggccgtcttgctgatttggtggaccgcagtgatgtagcacggaaaatgaaggatgaagaaggattttactttccacacaatcttgacttccggggccgtgcatatcctatgcacccatacttgaatcatctcggttcagatctttgccggggtattttagcgtttgcagagggacgccctcttggaaagtcaggcttacgttggctgaagatacacttggcaaatctatatgctggtggtgtggacaaattatctcttgagggtcgactagcatttactgagaatcatttggatgatatatttgattctgtggacagaccactagaaggaaggcgctggtggttgaaggcagaagacccatttcagtgcttggctgtgtgcattaacctctctgaagctctaagaagctcttctccagagacatttatctcacatattcctgtacatcaggatggctcttgcaatggcttacaacactatgctgcccttggaagggacaagttaggagcaggtgctgtcaatctggttgcaggagagaaacctgctgatgtttactcaggaatagctgctagggttctggctatcatgcagagtgatgcacagaaggatcctgaagtttttcctgatgcattgcgtgcaagagtgttagttaatcaggtggataggaagttggtaaagcagactgtgatgacgtcagtatatggtgtcacttatattggtgctcgggatcaaatcaagaggaggttgaaggaacgtggtgccatttcagatgatgcagaggtctttggttgtgcttgttatgctgcaaaggtcaccttaactgctttgggggagatgtttgaagctgcccgaagtatcatgagctggcttggagattgcgcaaaaataattgcatctgaaaatgagccagtacggtggacaactccacttggacttccagttgtgcaaccttaccgcaaatttggaaggcatcttattaaaacttcccttcaaattttgacattacaacgagaaacagaaaagatcatggtcaagaggcagaggacagctttcccaccaaattttgttcattccctcgatggttctcatatgatgatgactgcagttgcctgtaaaaaggcaggcttaaactttgcaggagttcatgactcgtattggacacatgcttgtgatgtggatgtaatgaacaggatactcagggaaaagtttgtcgagctatatgagactccaatactagagagattgtcggagagctttcagcagtcttttcctgaattaacttttccgcccttacctgagcggggcgactttgatttaagggacgttttagagtcaccttatttctttaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

971

Amino Acids

109.8

Weight (kDa)

9.38

Isoelectric Point (pI)

54.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15700 AT5G15700
fragaria_vesca	FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120
malus_domestica	MD09G1076800.v1.1 MD15G1148800.v1.1 MD17G1067300.v1.1
prunus_persica	Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1
pyrus_communis	pycom09g00400 pycom17g06760
rosa_chinensis	RchiOBHm_Chr2g0164571
rosa_laevigata	RLG00000021466
rosa_multiflora	Rmu_co8270321.1_g000001 Rmu_sc0020353.1_g000005 Rmu_ssc0000076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086480
rosa_rugosa	Rorug02G0509000 Rorug02G0509100 Rorug02G0509100 Rorug02G0509200.1
rosa_samantha	Rh2AG576800 Rh2BG587900 Rh2CG558700 Rh2DG598500
rosa_wichuraiana	Rw2G047890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2063
AatII	GACGTC	1 cut(s)	2258
Acc16I	TGCGCA	2 cut(s)	1409, 2443
Acc36I	ACCTGC	3 cut(s)	1204, 2063, 2113
Acc65I	GGTACC	1 cut(s)	1342
AccB1I	GGYRCC	3 cut(s)	637, 1342, 2321
AccBSI	CCGCTC	1 cut(s)	2863
AccI	GTMKAC	1 cut(s)	1828
AclWI	GGATC	4 cut(s)	1268, 2165, 2178, 2298
AcsI	RAATTY	5 cut(s)	271, 1012, 2522, 2556, 2623
AcuI	CTGAAG	3 cut(s)	1790, 1977, 2196
AcyI	GRCGYC	2 cut(s)	1738, 2255
AdeI	CACNNNGTG	2 cut(s)	1054, 1318
AfaI	GTAC	6 cut(s)	533, 599, 1344, 1530, 2007, 2475
AfiI	CCNNNNNNNGG	9 cut(s)	120, 317, 318, 576, 1512, 1889, 2055, 2056, 2864
AflII	CTTAAG	1 cut(s)	542
AjnI	CCWGG	3 cut(s)	1086, 1454, 1485
AjuI	GAANNNNNNNTTGG	2 cut(s)	1763, 1795
Alw21I	GWGCWC	3 cut(s)	196, 1209, 2287
Alw26I	GTCTC	4 cut(s)	327, 560, 1976, 2780
Alw44I	GTGCAC	1 cut(s)	1205
AlwI	GGATC	4 cut(s)	1268, 2165, 2178, 2298
AlwNI	CAGNNNCTG	2 cut(s)	634, 2078
Ama87I	CYCGRG	1 cut(s)	2286
AoxI	GGCC	5 cut(s)	161, 585, 1482, 1564, 1657
ApaLI	GTGCAC	1 cut(s)	1205
ApeKI	GCWGC	7 cut(s)	743, 860, 1429, 2045, 2129, 2366, 2408
ApoI	RAATTY	5 cut(s)	271, 1012, 2522, 2556, 2623
Asp700I	GAANNNNTTC	2 cut(s)	1972, 2181
Asp718I	GGTACC	1 cut(s)	1342
AspLEI	GCGC	3 cut(s)	1410, 1899, 2444
AspS9I	GGNCC	6 cut(s)	752, 1178, 1449, 1483, 1585, 1657
AsuC2I	CCSGG	2 cut(s)	1655, 1712
AsuHPI	GGTGA	5 cut(s)	40, 887, 1330, 2368, 2889
AsuII	TTCGAA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	2286
AvaII	GGWCC	4 cut(s)	752, 1178, 1449, 1585
BaeGI	GKGCMC	2 cut(s)	1209, 1383
BamHI	GGATCC	1 cut(s)	2170
BanI	GGYRCC	3 cut(s)	637, 1342, 2321
BanII	GRGCYC	2 cut(s)	157, 196
BauI	CACGAG	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	1923
Bbv12I	GWGCWC	3 cut(s)	196, 1209, 2287
BbvCI	CCTCAGC	2 cut(s)	378, 402
BbvI	GCAGC	7 cut(s)	755, 847, 1441, 2032, 2116, 2353, 2395
BccI	CCATC	8 cut(s)	14, 106, 419, 607, 805, 1503, 2009, 2636
BceAI	ACGGC	2 cut(s)	1551, 1644
BciT130I	CCWGG	3 cut(s)	1088, 1456, 1487
BciVI	GTATCC	1 cut(s)	2748
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	2 cut(s)	1655, 1712
BcoDI	GTCTC	4 cut(s)	327, 560, 1976, 2780
BfaI	CTAG	8 cut(s)	369, 504, 1466, 1557, 1832, 1886, 2133, 2798
BfmI	CTRYAG	1 cut(s)	2664
BfoI	RGCGCY	1 cut(s)	1900
BfrI	CTTAAG	1 cut(s)	542
BfuAI	ACCTGC	3 cut(s)	1204, 2063, 2113
BfuI	GTATCC	1 cut(s)	2748
BglII	AGATCT	1 cut(s)	1702
Bme1390I	CCNGG	5 cut(s)	1088, 1456, 1487, 1655, 1712
Bme18I	GGWCC	4 cut(s)	752, 1178, 1449, 1585
BmeT110I	CYCGRG	1 cut(s)	2286
BmgT120I	GGNCC	6 cut(s)	752, 1178, 1449, 1483, 1585, 1657
BmiI	GGNNCC	8 cut(s)	494, 639, 1085, 1344, 1451, 1658, 2172, 2323
BmrFI	CCNGG	5 cut(s)	1088, 1456, 1487, 1655, 1712
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	8 cut(s)	388, 958, 1222, 2149, 2179, 2326, 2465, 2542
BmuI	ACTGGG	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	1923
BpmI	CTGGAG	2 cut(s)	1102, 1962
Bpu10I	CCTNAGC	4 cut(s)	378, 402, 1101, 2859
Bpu14I	TTCGAA	1 cut(s)	70
BpuEI	CTTGAG	3 cut(s)	227, 1316, 1841
BpuMI	CCSGG	2 cut(s)	1655, 1712
BsaHI	GRCGYC	2 cut(s)	1738, 2255
BsaI	GGTCTC	2 cut(s)	327, 560
BsaWI	WCCGGW	1 cut(s)	956
Bsc4I	CCNNNNNNNGG	9 cut(s)	120, 317, 318, 576, 1512, 1889, 2055, 2056, 2864
Bse118I	RCCGGY	3 cut(s)	495, 772, 827
Bse1I	ACTGG	4 cut(s)	312, 1472, 2471, 2501
Bse3DI	GCAATG	2 cut(s)	2032, 2192
BseBI	CCWGG	3 cut(s)	1088, 1456, 1487
BseGI	GGATG	4 cut(s)	1621, 1861, 2020, 2746
BseLI	CCNNNNNNNGG	9 cut(s)	120, 317, 318, 576, 1512, 1889, 2055, 2056, 2864
BseMI	GCAATG	2 cut(s)	2032, 2192
BseMII	CTCAG	6 cut(s)	369, 393, 1833, 2133, 2773, 2850
BseNI	ACTGG	4 cut(s)	312, 1472, 2471, 2501
BseRI	GAGGAG	2 cut(s)	562, 2317
BseSI	GKGCMC	2 cut(s)	1209, 1383
BseXI	GCAGC	7 cut(s)	755, 847, 1441, 2032, 2116, 2353, 2395
BshFI	GGCC	5 cut(s)	163, 587, 1484, 1566, 1659
BshNI	GGYRCC	3 cut(s)	637, 1342, 2321
BsiHKAI	GWGCWC	3 cut(s)	196, 1209, 2287
BsiHKCI	CYCGRG	1 cut(s)	2286
BsiSI	CCGG	7 cut(s)	496, 773, 828, 957, 1157, 1654, 1711
BslFI	GGGAC	5 cut(s)	1074, 1187, 1749, 2072, 2897
BslI	CCNNNNNNNGG	9 cut(s)	120, 317, 318, 576, 1512, 1889, 2055, 2056, 2864
BsmAI	GTCTC	4 cut(s)	327, 560, 1976, 2780
BsmFI	GGGAC	5 cut(s)	1074, 1187, 1749, 2072, 2897
BsmI	GAATGC	1 cut(s)	1410
BsnI	GGCC	5 cut(s)	163, 587, 1484, 1566, 1659
Bso31I	GGTCTC	2 cut(s)	327, 560
BsoBI	CYCGRG	1 cut(s)	2286
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1286I	GDGCHC	5 cut(s)	157, 196, 1209, 1383, 2287
Bsp1407I	TGTACA	1 cut(s)	2005
Bsp143I	GATC	8 cut(s)	221, 295, 946, 1273, 1702, 2170, 2290, 2586
BspANI	GGCC	5 cut(s)	163, 587, 1484, 1566, 1659
BspCNI	CTCAG	6 cut(s)	370, 394, 1834, 2132, 2772, 2851
BspHI	TCATGA	3 cut(s)	232, 2421, 2707
BspLI	GGNNCC	8 cut(s)	494, 639, 1085, 1344, 1451, 1658, 2172, 2323
BspMAI	CTGCAG	1 cut(s)	2668
BspMI	ACCTGC	3 cut(s)	1204, 2063, 2113
BspPI	GGATC	4 cut(s)	1268, 2165, 2178, 2298
BspQI	GCTCTTC	1 cut(s)	1978
BspT104I	TTCGAA	1 cut(s)	70
BspT107I	GGYRCC	3 cut(s)	637, 1342, 2321
BspTI	CTTAAG	1 cut(s)	542
BspTNI	GGTCTC	2 cut(s)	327, 560
BsrBI	CCGCTC	1 cut(s)	2863
BsrDI	GCAATG	2 cut(s)	2032, 2192
BsrFI	RCCGGY	3 cut(s)	495, 772, 827
BsrGI	TGTACA	1 cut(s)	2005
BsrI	ACTGG	4 cut(s)	312, 1472, 2471, 2501
BssAI	RCCGGY	3 cut(s)	495, 772, 827
BssMI	GATC	8 cut(s)	221, 295, 946, 1273, 1702, 2170, 2290, 2586
BssNI	GRCGYC	2 cut(s)	1738, 2255
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	5 cut(s)	54, 670, 705, 727, 2050
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	3 cut(s)	1088, 1456, 1487
Bst4CI	ACNGT	7 cut(s)	480, 1178, 1222, 1244, 1395, 2248, 2478
Bst6I	CTCTTC	2 cut(s)	402, 1978
BstACI	GRCGYC	2 cut(s)	1738, 2255
BstAFI	CTTAAG	1 cut(s)	542
BstAPI	GCANNNNNTGC	1 cut(s)	2198
BstAUI	TGTACA	1 cut(s)	2005
BstBI	TTCGAA	1 cut(s)	70
BstDEI	CTNAG	9 cut(s)	257, 378, 402, 1101, 1842, 1964, 2119, 2759, 2859
BstEII	GGTNACC	1 cut(s)	2374
BstF5I	GGATG	4 cut(s)	1621, 1861, 2020, 2746
BstH2I	RGCGCY	1 cut(s)	1900
BstHHI	GCGC	3 cut(s)	1410, 1899, 2444
BstKTI	GATC	8 cut(s)	224, 298, 949, 1276, 1705, 2173, 2293, 2589
BstMAI	GTCTC	4 cut(s)	327, 560, 1976, 2780
BstMBI	GATC	8 cut(s)	221, 295, 946, 1273, 1702, 2170, 2290, 2586
BstMWI	GCNNNNNNNGC	7 cut(s)	140, 253, 374, 496, 505, 2198, 2363
BstNI	CCWGG	3 cut(s)	1088, 1456, 1487
BstNSI	RCATGY	1 cut(s)	2729
BstPI	GGTNACC	1 cut(s)	2374
BstSCI	CCNGG	5 cut(s)	1086, 1454, 1485, 1653, 1710
BstSFI	CTRYAG	1 cut(s)	2664
BstSLI	GKGCMC	2 cut(s)	1209, 1383
BstV1I	GCAGC	7 cut(s)	755, 847, 1441, 2032, 2116, 2353, 2395
BstV2I	GAAGAC	1 cut(s)	1923
BstX2I	RGATCY	2 cut(s)	1702, 2170
BstXI	CCANNNNNNTGG	2 cut(s)	1356, 2478
BstYI	RGATCY	2 cut(s)	1702, 2170
BsuI	GTATCC	1 cut(s)	2748
BsuRI	GGCC	5 cut(s)	163, 587, 1484, 1566, 1659
BtsCI	GGATG	4 cut(s)	1621, 1861, 2020, 2746
BtsI	GCAGTG	2 cut(s)	1047, 1597
BtsIMutI	CAGTG	5 cut(s)	349, 393, 1047, 1597, 1934
BveI	ACCTGC	3 cut(s)	1204, 2063, 2113
CaiI	CAGNNNCTG	2 cut(s)	634, 2078
CciI	TCATGA	3 cut(s)	232, 2421, 2707
CfoI	GCGC	3 cut(s)	1410, 1899, 2444
Cfr10I	RCCGGY	3 cut(s)	495, 772, 827
Cfr13I	GGNCC	6 cut(s)	752, 1178, 1449, 1483, 1585, 1657
CpoI	CGGWCCG	1 cut(s)	1178
CseI	GACGC	1 cut(s)	1746
Csp6I	GTAC	6 cut(s)	532, 598, 1343, 1529, 2006, 2474
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CspI	CGGWCCG	1 cut(s)	1178
CviQI	GTAC	6 cut(s)	532, 598, 1343, 1529, 2006, 2474
DdeI	CTNAG	9 cut(s)	257, 378, 402, 1101, 1842, 1964, 2119, 2759, 2859
DpnI	GATC	8 cut(s)	223, 297, 948, 1275, 1704, 2172, 2292, 2588
DpnII	GATC	8 cut(s)	221, 295, 946, 1273, 1702, 2170, 2290, 2586
DraIII	CACNNNGTG	2 cut(s)	1054, 1318
Eam1104I	CTCTTC	2 cut(s)	402, 1978
EarI	CTCTTC	2 cut(s)	402, 1978
EciI	GGCGGA	2 cut(s)	505, 2838
Ecl136II	GAGCTC	1 cut(s)	194
Eco130I	CCWWGG	5 cut(s)	54, 670, 705, 727, 2050
Eco24I	GRGCYC	2 cut(s)	157, 196
Eco31I	GGTCTC	2 cut(s)	327, 560
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	4 cut(s)	752, 1178, 1449, 1585
Eco53kI	GAGCTC	1 cut(s)	194
Eco57I	CTGAAG	3 cut(s)	1790, 1977, 2196
Eco88I	CYCGRG	1 cut(s)	2286
Eco91I	GGTNACC	1 cut(s)	2374
EcoICRI	GAGCTC	1 cut(s)	194
EcoO109I	RGGNCCY	2 cut(s)	1449, 1483
EcoO65I	GGTNACC	1 cut(s)	2374
EcoRII	CCWGG	3 cut(s)	1086, 1454, 1485
EcoRV	GATATC	1 cut(s)	108
EcoT14I	CCWWGG	5 cut(s)	54, 670, 705, 727, 2050
EcoT22I	ATGCAT	2 cut(s)	804, 2194
EcoT38I	GRGCYC	2 cut(s)	157, 196
ErhI	CCWWGG	5 cut(s)	54, 670, 705, 727, 2050
FaqI	GGGAC	5 cut(s)	1074, 1187, 1749, 2072, 2897
FauI	CCCGC	1 cut(s)	2856
FauNDI	CATATG	3 cut(s)	300, 1399, 2652
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	1828
FokI	GGATG	4 cut(s)	1628, 1868, 2027, 2753
FriOI	GRGCYC	2 cut(s)	157, 196
FspAI	RTGCGCAY	1 cut(s)	1409
FspBI	CTAG	8 cut(s)	369, 504, 1466, 1557, 1832, 1886, 2133, 2798
FspI	TGCGCA	2 cut(s)	1409, 2443
GlaI	GCGC	3 cut(s)	1409, 1898, 2443
GsuI	CTGGAG	2 cut(s)	1102, 1962
HaeII	RGCGCY	1 cut(s)	1900
HaeIII	GGCC	5 cut(s)	163, 587, 1484, 1566, 1659
HapII	CCGG	7 cut(s)	496, 773, 828, 957, 1157, 1654, 1711
HgaI	GACGC	1 cut(s)	1746
HhaI	GCGC	3 cut(s)	1410, 1899, 2444
Hin1I	GRCGYC	2 cut(s)	1738, 2255
Hin6I	GCGC	3 cut(s)	1408, 1897, 2442
HinP1I	GCGC	3 cut(s)	1408, 1897, 2442
HincII	GTYRAC	1 cut(s)	1829
HindII	GTYRAC	1 cut(s)	1829
HindIII	AAGCTT	1 cut(s)	127
HpaII	CCGG	7 cut(s)	496, 773, 828, 957, 1157, 1654, 1711
HphI	GGTGA	5 cut(s)	40, 887, 1330, 2368, 2889
Hpy166II	GTNNAC	8 cut(s)	393, 1207, 1585, 1807, 1829, 1876, 2116, 2481
Hpy188I	TCNGA	7 cut(s)	327, 967, 1702, 1957, 2332, 2461, 2812
Hpy8I	GTNNAC	8 cut(s)	393, 1207, 1585, 1807, 1829, 1876, 2116, 2481
HpyCH4III	ACNGT	7 cut(s)	480, 1178, 1222, 1244, 1395, 2248, 2478
HpyCH4IV	ACGT	4 cut(s)	1762, 2255, 2317, 2886
HpyF10VI	GCNNNNNNNGC	7 cut(s)	140, 253, 374, 496, 505, 2198, 2363
HpyF3I	CTNAG	9 cut(s)	257, 378, 402, 1101, 1842, 1964, 2119, 2759, 2859
HpySE526I	ACGT	4 cut(s)	1762, 2255, 2317, 2886
Hsp92I	GRCGYC	2 cut(s)	1738, 2255
HspAI	GCGC	3 cut(s)	1408, 1897, 2442
KpnI	GGTACC	1 cut(s)	1346
KroI	GCCGGC	1 cut(s)	495
KroNI	GCCGGC	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	8 cut(s)	221, 295, 946, 1273, 1702, 2170, 2290, 2586
LguI	GCTCTTC	1 cut(s)	1978
LmnI	GCTCC	6 cut(s)	492, 604, 709, 1083, 1418, 2069
Lsp1109I	GCAGC	7 cut(s)	755, 847, 1441, 2032, 2116, 2353, 2395
LweI	GCATC	8 cut(s)	388, 958, 1222, 2149, 2179, 2326, 2465, 2542
MaeI	CTAG	8 cut(s)	369, 504, 1466, 1557, 1832, 1886, 2133, 2798
MaeII	ACGT	4 cut(s)	1762, 2255, 2317, 2886
MaeIII	GTNAC	5 cut(s)	768, 1006, 2269, 2374, 2895
MalI	GATC	8 cut(s)	223, 297, 948, 1275, 1704, 2172, 2292, 2588
MbiI	CCGCTC	1 cut(s)	2863
MboI	GATC	8 cut(s)	221, 295, 946, 1273, 1702, 2170, 2290, 2586
MboII	GAAGA	7 cut(s)	419, 745, 1263, 1631, 1783, 1928, 1965
MfeI	CAATTG	1 cut(s)	1354
MflI	RGATCY	2 cut(s)	1702, 2170
MhlI	GDGCHC	5 cut(s)	157, 196, 1209, 1383, 2287
MlyI	GAGTC	3 cut(s)	2705, 2782, 2903
MmeI	TCCRAC	1 cut(s)	2790
Mph1103I	ATGCAT	2 cut(s)	804, 2194
MroNI	GCCGGC	1 cut(s)	495
MroXI	GAANNNNTTC	2 cut(s)	1972, 2181
MslI	CAYNNNNRTG	4 cut(s)	1854, 1927, 2013, 2730
MspA1I	CMGCKG	2 cut(s)	116, 1183
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	7 cut(s)	496, 773, 828, 957, 1157, 1654, 1711
MspR9I	CCNGG	5 cut(s)	1088, 1456, 1487, 1655, 1712
MunI	CAATTG	1 cut(s)	1354
Mva1269I	GAATGC	1 cut(s)	1410
MvaI	CCWGG	3 cut(s)	1088, 1456, 1487
MwoI	GCNNNNNNNGC	7 cut(s)	140, 253, 374, 496, 505, 2198, 2363
NaeI	GCCGGC	1 cut(s)	497
NciI	CCSGG	2 cut(s)	1655, 1712
NdeI	CATATG	3 cut(s)	300, 1399, 2652
NdeII	GATC	8 cut(s)	221, 295, 946, 1273, 1702, 2170, 2290, 2586
NgoMIV	GCCGGC	1 cut(s)	495
NlaIV	GGNNCC	8 cut(s)	494, 639, 1085, 1344, 1451, 1658, 2172, 2323
NmuCI	GTSAC	4 cut(s)	1006, 2269, 2374, 2895
NsbI	TGCGCA	2 cut(s)	1409, 2443
NsiI	ATGCAT	2 cut(s)	804, 2194
NspI	RCATGY	1 cut(s)	2729
NspV	TTCGAA	1 cut(s)	70
PagI	TCATGA	3 cut(s)	232, 2421, 2707
PaqCI	CACCTGC	1 cut(s)	2063
PasI	CCCWGGG	1 cut(s)	1455
PciSI	GCTCTTC	1 cut(s)	1978
PctI	GAATGC	1 cut(s)	1410
PdiI	GCCGGC	1 cut(s)	497
PdmI	GAANNNNTTC	2 cut(s)	1972, 2181
PfeI	GAWTC	7 cut(s)	328, 962, 1070, 1321, 1687, 1846, 1868
PleI	GAGTC	3 cut(s)	2705, 2782, 2902
PpsI	GAGTC	3 cut(s)	2705, 2782, 2902
PpuMI	RGGWCCY	1 cut(s)	1449
Psp124BI	GAGCTC	1 cut(s)	196
Psp5II	RGGWCCY	1 cut(s)	1449
Psp6I	CCWGG	3 cut(s)	1086, 1454, 1485
PspEI	GGTNACC	1 cut(s)	2374
PspGI	CCWGG	3 cut(s)	1086, 1454, 1485
PspN4I	GGNNCC	8 cut(s)	494, 639, 1085, 1344, 1451, 1658, 2172, 2323
PspPI	GGNCC	6 cut(s)	752, 1178, 1449, 1483, 1585, 1657
PspPPI	RGGWCCY	1 cut(s)	1449
PstI	CTGCAG	1 cut(s)	2668
PstNI	CAGNNNCTG	2 cut(s)	634, 2078
PsuI	RGATCY	2 cut(s)	1702, 2170
RsaI	GTAC	6 cut(s)	533, 599, 1344, 1530, 2007, 2475
RsaNI	GTAC	6 cut(s)	532, 598, 1343, 1529, 2006, 2474
RseI	CAYNNNNRTG	4 cut(s)	1854, 1927, 2013, 2730
Rsr2I	CGGWCCG	1 cut(s)	1178
RsrII	CGGWCCG	1 cut(s)	1178
SacI	GAGCTC	1 cut(s)	196
SalI	GTCGAC	1 cut(s)	1827
SapI	GCTCTTC	1 cut(s)	1978
Sau3AI	GATC	8 cut(s)	221, 295, 946, 1273, 1702, 2170, 2290, 2586
Sau96I	GGNCC	6 cut(s)	752, 1178, 1449, 1483, 1585, 1657
SchI	GAGTC	3 cut(s)	2705, 2782, 2903
ScrFI	CCNGG	5 cut(s)	1088, 1456, 1487, 1655, 1712
SduI	GDGCHC	5 cut(s)	157, 196, 1209, 1383, 2287
SfaNI	GCATC	8 cut(s)	388, 958, 1222, 2149, 2179, 2326, 2465, 2542
SfcI	CTRYAG	1 cut(s)	2664
SfuI	TTCGAA	1 cut(s)	70
SinI	GGWCC	4 cut(s)	752, 1178, 1449, 1585
SmiMI	CAYNNNNRTG	4 cut(s)	1854, 1927, 2013, 2730
SmlI	CTYRAG	4 cut(s)	242, 542, 1295, 1820
SmoI	CTYRAG	4 cut(s)	242, 542, 1295, 1820
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	8 cut(s)	369, 504, 1466, 1557, 1832, 1886, 2133, 2798
SstI	GAGCTC	1 cut(s)	196
StyD4I	CCNGG	5 cut(s)	1086, 1454, 1485, 1653, 1710
StyI	CCWWGG	5 cut(s)	54, 670, 705, 727, 2050
TaaI	ACNGT	7 cut(s)	480, 1178, 1222, 1244, 1395, 2248, 2478
TaiI	ACGT	4 cut(s)	1765, 2258, 2320, 2889
TaqI	TCGA	6 cut(s)	70, 224, 331, 1828, 2640, 2775
TaqII	GACCGA	1 cut(s)	584
TatI	WGTACW	2 cut(s)	597, 2005
TauI	GCSGC	3 cut(s)	490, 590, 726
TfiI	GAWTC	7 cut(s)	328, 962, 1070, 1321, 1687, 1846, 1868
TscAI	CASTG	5 cut(s)	349, 400, 1047, 1597, 1934
TseFI	GTSAC	4 cut(s)	1006, 2269, 2374, 2895
TseI	GCWGC	7 cut(s)	743, 860, 1429, 2045, 2129, 2366, 2408
Tsp45I	GTSAC	4 cut(s)	1006, 2269, 2374, 2895
TspGWI	ACGGA	1 cut(s)	1618
TspRI	CASTG	5 cut(s)	349, 400, 1047, 1597, 1934
Vha464I	CTTAAG	1 cut(s)	542
VneI	GTGCAC	1 cut(s)	1205
VpaK11BI	GGWCC	4 cut(s)	752, 1178, 1449, 1585
XapI	RAATTY	5 cut(s)	271, 1012, 2522, 2556, 2623
XceI	RCATGY	1 cut(s)	2729
XmiI	GTMKAC	1 cut(s)	1828
XmnI	GAANNNNTTC	2 cut(s)	1972, 2181
XspI	CTAG	8 cut(s)	369, 504, 1466, 1557, 1832, 1886, 2133, 2798
ZraI	GACGTC	1 cut(s)	2256
Zsp2I	ATGCAT	2 cut(s)	804, 2194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.