Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003739

Physical Location & Seq

Genomic Coordinates Reverse (-)

75669746 .. 75677511

Gene Structure 7766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021466

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2946 bp

ATGTCCATCACCCAAACCCCACCACCACCACTCTCCCCTGCAAATCTCACCACCAAGGCTTTTGCTTTTCGAAGCCCTATTATTCCCCCCCAAAACCCATCAATGATATCAACCGCTGTGTGGAGAAGCTTCGCTAAACAAGCCATTTCCAGAGCCCAGAGGCTCCCCCTTAAACCCCAATCTCTTTCACGAGCTTATACCCTTCCGGGTTTTTGCCAAAGATCGAGTTTTCATGAAAATCTCAAGCCCATTTTGCTAAGTTCTTGCTCAAATTTGGTGGGTTTTCACCGAAATGATCATATGCACAAGCCCGGTTTTGGGTCTCTGAATCGAGTTGGGGTCAGTGATTTCTGCCCCAAAGGGTATGCTAGTGTAGCTGAGGCGGTTTCGTCCACTGATGTTGAGGAAGAGGTGTCTGTTGTTGATGGGCTTCAAGAAATATTGCAGGAGATGAGAAAAGAGGATAGGAGGCAGGCACAGTATAGGCGGCGGAGCCGGCAAGCTAGGCAGAGAGGAATGGGGCAAGGGAAGTACCTAATGCTTAAGAGGAGGCAGATAAAGATTGAGACCGAAGCGTGGGAGAAGGCGGCGAAAGAGTACAGGGAGCTTTTGATGGACATGTGTGAGCAGAAGCTGGCACCCAATTTGCCATATATGAAGTCTTTGTTCCTTGGTTGGTTTGAGCCTTTGTGTAATGCCGTTACCAAGGAGCAAGACTTGTGCCGCCAAGGGAAGAATAAGGCGGCTTATGGTCCATATATGGATAAGTTACCGGCTGATATGATGTCGGTTATTACAATGCATAAGTTGATGGGGTTGCTGATGACCGGTGAGCATGGTAGTTGCAGGGTTGTATCGGCTGCTTGCACCATTGGTGAAGCCATAGAGCAGGAGGTTAGAATACACAACTTCTTGGAAAGGACAAAAAAGAAAAAGGTTGGTAAAGATCAGGAAACCGGAGAATCTGATGCTATGATGAAGGAAAATGAGAAGCTGAATAAAAAGGTCACAAATTTGATGAAAAAACAAAAAATGCAAGCAGTGAGGCACATAGTGAGGGGAAATGATGATTCAAAAGGCTGGAGCCAGGAAGCAAAGGCTAAGGTTGGCAGTCGTTTGATTGAATTGCTGACCCAAACAGCTTTTATACAACCTCCGGCTAATCAGTTAGGGGACGGTCCGCTGGACATACGACCTGCATTTGCAAGGCACATGGTGATTCCTTATATGCCCATGTTGGTACCCCCACTCAATTGGACAGGTTATGACAAAGGAGGGCACTTTTTCCTACCGTCATATGTCATGCGCATTCATGGAGCTAAACAGCAGCGTGAAGCAGTTAAGAGGACCCCCAGGGAACAACTAGAACCAGTTTTTAAGGCCCTGGACACTCTTGGGAATACCAGATGGAGGGTTAATAAGAGGGTACTTAATGTTGTAGATAGGATATGGGCTAGTGGAGGCCGTCTTGCTGATTTGGTGGACCGCAGTGATGTTCCTTTACCAGAGAAACCAGATACTGAAGATGAAACATTGCTTAAAAAATGGAAGTGGAAAGTGACCTCTGTGAAGAAAGAGAACAGGGAGAGACATGCACAGCGTTGTGACATAGAACTTAAACTTGCTGTAGCACGGAAAATGAAGGATGAAGAAGGATTTTACTTTCCACACAATCTTGACTTCCGGGGCCGTGCATATCCTATGCACCCATACTTGAACCATCTCGGTTCAGATCTTTGCCGGGGTATTTTAGAGTTTGCAGAGGGACGCCCTCTTGGAAAGTCAGGCTTACGTTGGCTGAAGATACACTTGGCAAATCTATATGCTGGTGGTGTGGACAAATTATCTCTTGAGGGTCGACTAGCATTTACTGAGAATCATTTGGATGATATATTTGATTCTGTGGACAGACCACTAGAAGGAAGGCGCTGGTGGTTGAAGGCAGAAGATCCATTTCAGTGCTTGGCTGTGTGCATTAACCTCTCTGAAGCTCTAAGAAGCTCTTCTCCAGAGACATTTATCTCACATATTCCTGTACATCAGGATGGCTCTTGCAATGGCTTACAACACTATGCTGCCCTTGGAAGGGACAAGTTAGGAGCAGGTGCTGTCAATCTGGTTGCGGGAGAGAAACCTGCTGATGTTTACTCAGGAATAGCTGCTAGGGTTCTGGCTATCATGCAGAGTGATGCACAGAAGGATCCTGAAGTTTTTCCTGATGCATTGCGTGCAAGAGTGTTAGTTAATCAGGTGGATAGGAAGTTGGTAAAGCAGACTGTGATGACGTCAGTATATGGTGTCACTTATATTGGTGCTCGGGATCAAATCAAGAGGAGGTTGAAGGAACGTGGTGCCATTTCAGATGATGCAGAGGTCTTTGGTTGTGCTTGTTATGCTGCGAAGGTCACCTTAACTGCTTTGGGGGAGATGTTTGAAGCTGCTCGAAGTATCATGAGCTGGCTTGGAGATTGCGCAAAAATAATTGCATCTGAAAATGAGCCAGTACGGTGGACAACTCCACTTGGGCTTCCAGTTGTGCAACCTTACCGCAAATTTGGAAGGCATCTTATTAAAACTTCCCTTCAAATTTTGACATTACAACGAGAAACAGAAAAGATCATGGTCAAGAGGCAGAGGACAGCTTTCCCACCAAATTTTGTTCATTCCCTCGATGGTTCTCATATGATGATGACTGCAGTTGCCTGTAAAAAGGCAGGCTTAAACTTTGCAGGAGTTCATGACTCGTATTGGACACATGCTTGTGATGTGGATGTAATGAACAGGATACTCAGGGAAAAGTTTGTCGAGCTATATGAGACTCCAATACTAGAGAGATTGTCGGAGAGCTTTCAGCAGTCTTTTCCTGAATTAACTTTTCCGCCCTTACCTGAGCGGGGTGACTTTGATTTAAGGGACGTTTTAGAGTCACCTTATTTCTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

982

Amino Acids

111.19

Weight (kDa)

9.28

Isoelectric Point (pI)

53.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPOL_N	PF14700	184 - 404	1.4e-47	DNA-directed RNA polymerase N-terminal
RPOL_N	PF14700	402 - 467	4.4e-23	DNA-directed RNA polymerase N-terminal
RNA_pol	PF00940	590 - 955	1.5e-159	DNA-dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15700 AT5G15700
fragaria_vesca	FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120
malus_domestica	MD09G1076800.v1.1 MD15G1148800.v1.1 MD17G1067300.v1.1
prunus_persica	Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1
pyrus_communis	pycom09g00400 pycom17g06760
rosa_chinensis	RchiOBHm_Chr2g0164571
rosa_laevigata	RLG00000021466
rosa_multiflora	Rmu_co8270321.1_g000001 Rmu_sc0020353.1_g000005 Rmu_ssc0000076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086480
rosa_rugosa	Rorug02G0509000 Rorug02G0509100 Rorug02G0509100 Rorug02G0509200.1
rosa_samantha	Rh2AG576800 Rh2BG587900 Rh2CG558700 Rh2DG598500
rosa_wichuraiana	Rw2G047890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2093
AatII	GACGTC	1 cut(s)	2288
Acc16I	TGCGCA	2 cut(s)	1307, 2473
Acc36I	ACCTGC	3 cut(s)	1204, 2093, 2143
Acc65I	GGTACC	1 cut(s)	1240
AccB1I	GGYRCC	3 cut(s)	637, 1240, 2351
AccBSI	CCGCTC	1 cut(s)	2893
AccI	GTMKAC	1 cut(s)	1858
AclWI	GGATC	4 cut(s)	1943, 2195, 2208, 2328
AcsI	RAATTY	5 cut(s)	271, 1012, 2552, 2586, 2653
AcuI	CTGAAG	4 cut(s)	1542, 1820, 2007, 2226
AcyI	GRCGYC	2 cut(s)	1768, 2285
AdeI	CACNNNGTG	2 cut(s)	1054, 1216
AfaI	GTAC	6 cut(s)	533, 599, 1242, 1428, 2037, 2505
AfiI	CCNNNNNNNGG	9 cut(s)	120, 317, 318, 576, 1410, 1919, 2085, 2086, 2894
AflII	CTTAAG	1 cut(s)	542
AflIII	ACRYGT	1 cut(s)	618
AgeI	ACCGGT	1 cut(s)	827
AgsI	TTSAA	8 cut(s)	434, 1074, 1124, 1717, 1939, 2341, 2435, 2585
AjnI	CCWGG	3 cut(s)	1086, 1352, 1383
AjuI	GAANNNNNNNTTGG	2 cut(s)	1793, 1825
Alw21I	GWGCWC	1 cut(s)	2317
Alw26I	GTCTC	5 cut(s)	327, 560, 1582, 2006, 2810
AlwI	GGATC	4 cut(s)	1943, 2195, 2208, 2328
AlwNI	CAGNNNCTG	3 cut(s)	634, 1520, 2108
Ama87I	CYCGRG	1 cut(s)	2316
AoxI	GGCC	3 cut(s)	1380, 1462, 1687
ApeKI	GCWGC	6 cut(s)	860, 1327, 2075, 2159, 2396, 2438
ApoI	RAATTY	5 cut(s)	271, 1012, 2552, 2586, 2653
AsiGI	ACCGGT	1 cut(s)	827
Asp700I	GAANNNNTTC	2 cut(s)	2002, 2211
Asp718I	GGTACC	1 cut(s)	1240
AspLEI	GCGC	3 cut(s)	1308, 1929, 2474
AspS9I	GGNCC	6 cut(s)	752, 1178, 1347, 1381, 1483, 1687
AsuC2I	CCSGG	4 cut(s)	207, 312, 1685, 1742
AsuHPI	GGTGA	8 cut(s)	40, 278, 842, 887, 1228, 2398, 2909, 2919
AsuII	TTCGAA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	2316
AvaII	GGWCC	4 cut(s)	752, 1178, 1347, 1483
BaeGI	GKGCMC	1 cut(s)	1281
BamHI	GGATCC	1 cut(s)	2200
BanI	GGYRCC	3 cut(s)	637, 1240, 2351
BanII	GRGCYC	1 cut(s)	157
BauI	CACGAG	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	2317
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	6 cut(s)	847, 1339, 2062, 2146, 2383, 2425
BccI	CCATC	9 cut(s)	14, 106, 419, 607, 805, 1401, 1728, 2039, 2666
BceAI	ACGGC	3 cut(s)	683, 1449, 1674
BciT130I	CCWGG	3 cut(s)	1088, 1354, 1385
BciVI	GTATCC	1 cut(s)	2778
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	4 cut(s)	207, 312, 1685, 1742
BcoDI	GTCTC	5 cut(s)	327, 560, 1582, 2006, 2810
BfaI	CTAG	8 cut(s)	369, 504, 1364, 1455, 1862, 1916, 2163, 2828
BfmI	CTRYAG	2 cut(s)	1626, 2694
BfoI	RGCGCY	1 cut(s)	1930
BfrI	CTTAAG	1 cut(s)	542
BfuAI	ACCTGC	3 cut(s)	1204, 2093, 2143
BfuI	GTATCC	1 cut(s)	2778
BglII	AGATCT	1 cut(s)	1732
Bme1390I	CCNGG	7 cut(s)	207, 312, 1088, 1354, 1385, 1685, 1742
Bme18I	GGWCC	4 cut(s)	752, 1178, 1347, 1483
BmeT110I	CYCGRG	1 cut(s)	2316
BmgT120I	GGNCC	6 cut(s)	752, 1178, 1347, 1381, 1483, 1687
BmiI	GGNNCC	9 cut(s)	164, 494, 639, 1085, 1242, 1349, 1688, 2202, 2353
BmrFI	CCNGG	7 cut(s)	207, 312, 1088, 1354, 1385, 1685, 1742
BmsI	GCATC	6 cut(s)	958, 2179, 2209, 2356, 2495, 2572
BpmI	CTGGAG	2 cut(s)	1102, 1992
Bpu10I	CCTNAGC	3 cut(s)	378, 1101, 2889
Bpu14I	TTCGAA	1 cut(s)	70
BpuEI	CTTGAG	2 cut(s)	227, 1871
BpuMI	CCSGG	4 cut(s)	207, 312, 1685, 1742
BsaHI	GRCGYC	2 cut(s)	1768, 2285
BsaI	GGTCTC	2 cut(s)	327, 560
BsaWI	WCCGGW	2 cut(s)	827, 956
Bsc4I	CCNNNNNNNGG	9 cut(s)	120, 317, 318, 576, 1410, 1919, 2085, 2086, 2894
Bse118I	RCCGGY	3 cut(s)	495, 772, 827
Bse1I	ACTGG	3 cut(s)	1370, 2501, 2531
Bse3DI	GCAATG	3 cut(s)	1532, 2062, 2222
BseBI	CCWGG	3 cut(s)	1088, 1354, 1385
BseGI	GGATG	4 cut(s)	1651, 1891, 2050, 2776
BseLI	CCNNNNNNNGG	9 cut(s)	120, 317, 318, 576, 1410, 1919, 2085, 2086, 2894
BseMI	GCAATG	3 cut(s)	1532, 2062, 2222
BseMII	CTCAG	5 cut(s)	369, 1863, 2163, 2803, 2880
BseNI	ACTGG	3 cut(s)	1370, 2501, 2531
BseRI	GAGGAG	2 cut(s)	562, 2347
BseSI	GKGCMC	1 cut(s)	1281
BseXI	GCAGC	6 cut(s)	847, 1339, 2062, 2146, 2383, 2425
BshFI	GGCC	3 cut(s)	1382, 1464, 1689
BshNI	GGYRCC	3 cut(s)	637, 1240, 2351
BshTI	ACCGGT	1 cut(s)	827
BsiHKAI	GWGCWC	1 cut(s)	2317
BsiHKCI	CYCGRG	1 cut(s)	2316
BsiSI	CCGG	9 cut(s)	206, 312, 496, 773, 828, 957, 1157, 1684, 1741
BslFI	GGGAC	4 cut(s)	1187, 1779, 2102, 2927
BslI	CCNNNNNNNGG	9 cut(s)	120, 317, 318, 576, 1410, 1919, 2085, 2086, 2894
BsmAI	GTCTC	5 cut(s)	327, 560, 1582, 2006, 2810
BsmFI	GGGAC	4 cut(s)	1187, 1779, 2102, 2927
BsmI	GAATGC	1 cut(s)	1308
BsnI	GGCC	3 cut(s)	1382, 1464, 1689
Bso31I	GGTCTC	2 cut(s)	327, 560
BsoBI	CYCGRG	1 cut(s)	2316
Bsp119I	TTCGAA	1 cut(s)	70
Bsp1286I	GDGCHC	3 cut(s)	157, 1281, 2317
Bsp1407I	TGTACA	1 cut(s)	2035
Bsp143I	GATC	8 cut(s)	221, 295, 946, 1732, 1948, 2200, 2320, 2616
BspANI	GGCC	3 cut(s)	1382, 1464, 1689
BspCNI	CTCAG	5 cut(s)	370, 1864, 2162, 2802, 2881
BspHI	TCATGA	3 cut(s)	232, 2451, 2737
BspLI	GGNNCC	9 cut(s)	164, 494, 639, 1085, 1242, 1349, 1688, 2202, 2353
BspMAI	CTGCAG	1 cut(s)	2698
BspMI	ACCTGC	3 cut(s)	1204, 2093, 2143
BspPI	GGATC	4 cut(s)	1943, 2195, 2208, 2328
BspQI	GCTCTTC	1 cut(s)	2008
BspT104I	TTCGAA	1 cut(s)	70
BspT107I	GGYRCC	3 cut(s)	637, 1240, 2351
BspTI	CTTAAG	1 cut(s)	542
BspTNI	GGTCTC	2 cut(s)	327, 560
BsrBI	CCGCTC	1 cut(s)	2893
BsrDI	GCAATG	3 cut(s)	1532, 2062, 2222
BsrFI	RCCGGY	3 cut(s)	495, 772, 827
BsrGI	TGTACA	1 cut(s)	2035
BsrI	ACTGG	3 cut(s)	1370, 2501, 2531
BssAI	RCCGGY	3 cut(s)	495, 772, 827
BssMI	GATC	8 cut(s)	221, 295, 946, 1732, 1948, 2200, 2320, 2616
BssNI	GRCGYC	2 cut(s)	1768, 2285
BssSI	CACGAG	1 cut(s)	189
BssT1I	CCWWGG	5 cut(s)	54, 670, 705, 727, 2080
Bst2BI	CACGAG	1 cut(s)	189
Bst2UI	CCWGG	3 cut(s)	1088, 1354, 1385
Bst4CI	ACNGT	5 cut(s)	480, 1178, 1293, 2278, 2508
Bst6I	CTCTTC	2 cut(s)	402, 2008
BstACI	GRCGYC	2 cut(s)	1768, 2285
BstAFI	CTTAAG	1 cut(s)	542
BstAPI	GCANNNNNTGC	1 cut(s)	2228
BstAUI	TGTACA	1 cut(s)	2035
BstBI	TTCGAA	1 cut(s)	70
BstC8I	GCNNGC	9 cut(s)	474, 497, 501, 636, 865, 1038, 2229, 2459, 2716
BstDEI	CTNAG	8 cut(s)	257, 378, 1101, 1872, 1994, 2149, 2789, 2889
BstEII	GGTNACC	1 cut(s)	2404
BstF5I	GGATG	4 cut(s)	1651, 1891, 2050, 2776
BstH2I	RGCGCY	1 cut(s)	1930
BstHHI	GCGC	3 cut(s)	1308, 1929, 2474
BstKTI	GATC	8 cut(s)	224, 298, 949, 1735, 1951, 2203, 2323, 2619
BstMAI	GTCTC	5 cut(s)	327, 560, 1582, 2006, 2810
BstMBI	GATC	8 cut(s)	221, 295, 946, 1732, 1948, 2200, 2320, 2616
BstMWI	GCNNNNNNNGC	7 cut(s)	140, 253, 374, 496, 505, 2228, 2393
BstNI	CCWGG	3 cut(s)	1088, 1354, 1385
BstNSI	RCATGY	3 cut(s)	622, 1595, 2759
BstPI	GGTNACC	1 cut(s)	2404
BstSCI	CCNGG	7 cut(s)	205, 310, 1086, 1352, 1383, 1683, 1740
BstSFI	CTRYAG	2 cut(s)	1626, 2694
BstSLI	GKGCMC	1 cut(s)	1281
BstV1I	GCAGC	6 cut(s)	847, 1339, 2062, 2146, 2383, 2425
BstX2I	RGATCY	3 cut(s)	1732, 1948, 2200
BstXI	CCANNNNNNTGG	2 cut(s)	1254, 2508
BstYI	RGATCY	3 cut(s)	1732, 1948, 2200
BsuI	GTATCC	1 cut(s)	2778
BsuRI	GGCC	3 cut(s)	1382, 1464, 1689
BtsCI	GGATG	4 cut(s)	1651, 1891, 2050, 2776
BtsI	GCAGTG	2 cut(s)	1047, 1495
BtsIMutI	CAGTG	5 cut(s)	349, 393, 1047, 1495, 1964
BveI	ACCTGC	3 cut(s)	1204, 2093, 2143
Cac8I	GCNNGC	9 cut(s)	474, 497, 501, 636, 865, 1038, 2229, 2459, 2716
CaiI	CAGNNNCTG	3 cut(s)	634, 1520, 2108
CciI	TCATGA	3 cut(s)	232, 2451, 2737
CfoI	GCGC	3 cut(s)	1308, 1929, 2474
Cfr10I	RCCGGY	3 cut(s)	495, 772, 827
Cfr13I	GGNCC	6 cut(s)	752, 1178, 1347, 1381, 1483, 1687
CpoI	CGGWCCG	1 cut(s)	1178
CseI	GACGC	1 cut(s)	1776
Csp6I	GTAC	6 cut(s)	532, 598, 1241, 1427, 2036, 2504
CspAI	ACCGGT	1 cut(s)	827
CspCI	CAANNNNNGTGG	4 cut(s)	258, 293, 382, 417
CspI	CGGWCCG	1 cut(s)	1178
CviQI	GTAC	6 cut(s)	532, 598, 1241, 1427, 2036, 2504
DdeI	CTNAG	8 cut(s)	257, 378, 1101, 1872, 1994, 2149, 2789, 2889
DpnI	GATC	8 cut(s)	223, 297, 948, 1734, 1950, 2202, 2322, 2618
DpnII	GATC	8 cut(s)	221, 295, 946, 1732, 1948, 2200, 2320, 2616
DraIII	CACNNNGTG	2 cut(s)	1054, 1216
Eam1104I	CTCTTC	2 cut(s)	402, 2008
EarI	CTCTTC	2 cut(s)	402, 2008
EciI	GGCGGA	2 cut(s)	505, 2868
Eco130I	CCWWGG	5 cut(s)	54, 670, 705, 727, 2080
Eco24I	GRGCYC	1 cut(s)	157
Eco31I	GGTCTC	2 cut(s)	327, 560
Eco32I	GATATC	1 cut(s)	108
Eco47I	GGWCC	4 cut(s)	752, 1178, 1347, 1483
Eco57I	CTGAAG	4 cut(s)	1542, 1820, 2007, 2226
Eco88I	CYCGRG	1 cut(s)	2316
Eco91I	GGTNACC	1 cut(s)	2404
EcoO109I	RGGNCCY	2 cut(s)	1347, 1381
EcoO65I	GGTNACC	1 cut(s)	2404
EcoRII	CCWGG	3 cut(s)	1086, 1352, 1383
EcoRV	GATATC	1 cut(s)	108
EcoT14I	CCWWGG	5 cut(s)	54, 670, 705, 727, 2080
EcoT22I	ATGCAT	2 cut(s)	804, 2224
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	5 cut(s)	54, 670, 705, 727, 2080
FaqI	GGGAC	4 cut(s)	1187, 1779, 2102, 2927
FauI	CCCGC	2 cut(s)	2116, 2886
FauNDI	CATATG	3 cut(s)	300, 1297, 2682
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	1858
FokI	GGATG	4 cut(s)	1658, 1898, 2057, 2783
FriOI	GRGCYC	1 cut(s)	157
FspAI	RTGCGCAY	1 cut(s)	1307
FspBI	CTAG	8 cut(s)	369, 504, 1364, 1455, 1862, 1916, 2163, 2828
FspI	TGCGCA	2 cut(s)	1307, 2473
GlaI	GCGC	3 cut(s)	1307, 1928, 2473
GsuI	CTGGAG	2 cut(s)	1102, 1992
HaeII	RGCGCY	1 cut(s)	1930
HaeIII	GGCC	3 cut(s)	1382, 1464, 1689
HapII	CCGG	9 cut(s)	206, 312, 496, 773, 828, 957, 1157, 1684, 1741
HgaI	GACGC	1 cut(s)	1776
HhaI	GCGC	3 cut(s)	1308, 1929, 2474
Hin1I	GRCGYC	2 cut(s)	1768, 2285
Hin6I	GCGC	3 cut(s)	1306, 1927, 2472
HinP1I	GCGC	3 cut(s)	1306, 1927, 2472
HincII	GTYRAC	1 cut(s)	1859
HindII	GTYRAC	1 cut(s)	1859
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	9 cut(s)	328, 962, 1070, 1219, 1876, 1898, 2741, 2818, 2924
HpaII	CCGG	9 cut(s)	206, 312, 496, 773, 828, 957, 1157, 1684, 1741
HphI	GGTGA	8 cut(s)	40, 278, 842, 887, 1228, 2398, 2909, 2919
Hpy166II	GTNNAC	7 cut(s)	393, 1483, 1837, 1859, 1906, 2146, 2511
Hpy188I	TCNGA	7 cut(s)	327, 967, 1732, 1987, 2362, 2491, 2842
Hpy8I	GTNNAC	7 cut(s)	393, 1483, 1837, 1859, 1906, 2146, 2511
HpyCH4III	ACNGT	5 cut(s)	480, 1178, 1293, 2278, 2508
HpyCH4IV	ACGT	4 cut(s)	1792, 2285, 2347, 2916
HpyF10VI	GCNNNNNNNGC	7 cut(s)	140, 253, 374, 496, 505, 2228, 2393
HpyF3I	CTNAG	8 cut(s)	257, 378, 1101, 1872, 1994, 2149, 2789, 2889
HpySE526I	ACGT	4 cut(s)	1792, 2285, 2347, 2916
Hsp92I	GRCGYC	2 cut(s)	1768, 2285
HspAI	GCGC	3 cut(s)	1306, 1927, 2472
KpnI	GGTACC	1 cut(s)	1244
KroI	GCCGGC	1 cut(s)	495
KroNI	GCCGGC	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	8 cut(s)	221, 295, 946, 1732, 1948, 2200, 2320, 2616
LguI	GCTCTTC	1 cut(s)	2008
LmnI	GCTCC	7 cut(s)	168, 492, 604, 709, 1083, 1316, 2099
Lsp1109I	GCAGC	6 cut(s)	847, 1339, 2062, 2146, 2383, 2425
LweI	GCATC	6 cut(s)	958, 2179, 2209, 2356, 2495, 2572
MaeI	CTAG	8 cut(s)	369, 504, 1364, 1455, 1862, 1916, 2163, 2828
MaeII	ACGT	4 cut(s)	1792, 2285, 2347, 2916
MaeIII	GTNAC	9 cut(s)	700, 768, 1006, 1558, 1604, 2299, 2404, 2897, 2925
MalI	GATC	8 cut(s)	223, 297, 948, 1734, 1950, 2202, 2322, 2618
MbiI	CCGCTC	1 cut(s)	2893
MboI	GATC	8 cut(s)	221, 295, 946, 1732, 1948, 2200, 2320, 2616
MboII	GAAGA	8 cut(s)	419, 745, 1535, 1582, 1661, 1813, 1958, 1995
MfeI	CAATTG	1 cut(s)	1252
MflI	RGATCY	3 cut(s)	1732, 1948, 2200
MhlI	GDGCHC	3 cut(s)	157, 1281, 2317
MlyI	GAGTC	3 cut(s)	2735, 2812, 2933
MmeI	TCCRAC	1 cut(s)	2820
Mph1103I	ATGCAT	2 cut(s)	804, 2224
MroNI	GCCGGC	1 cut(s)	495
MroXI	GAANNNNTTC	2 cut(s)	2002, 2211
MslI	CAYNNNNRTG	5 cut(s)	291, 1884, 1957, 2043, 2760
MspA1I	CMGCKG	2 cut(s)	116, 1183
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	9 cut(s)	206, 312, 496, 773, 828, 957, 1157, 1684, 1741
MspR9I	CCNGG	7 cut(s)	207, 312, 1088, 1354, 1385, 1685, 1742
MunI	CAATTG	1 cut(s)	1252
Mva1269I	GAATGC	1 cut(s)	1308
MvaI	CCWGG	3 cut(s)	1088, 1354, 1385
MwoI	GCNNNNNNNGC	7 cut(s)	140, 253, 374, 496, 505, 2228, 2393
NaeI	GCCGGC	1 cut(s)	497
NciI	CCSGG	4 cut(s)	207, 312, 1685, 1742
NdeI	CATATG	3 cut(s)	300, 1297, 2682
NdeII	GATC	8 cut(s)	221, 295, 946, 1732, 1948, 2200, 2320, 2616
NgoMIV	GCCGGC	1 cut(s)	495
NlaIV	GGNNCC	9 cut(s)	164, 494, 639, 1085, 1242, 1349, 1688, 2202, 2353
NmuCI	GTSAC	7 cut(s)	1006, 1558, 1604, 2299, 2404, 2897, 2925
NsbI	TGCGCA	2 cut(s)	1307, 2473
NsiI	ATGCAT	2 cut(s)	804, 2224
NspI	RCATGY	3 cut(s)	622, 1595, 2759
NspV	TTCGAA	1 cut(s)	70
PagI	TCATGA	3 cut(s)	232, 2451, 2737
PaqCI	CACCTGC	1 cut(s)	2093
PasI	CCCWGGG	1 cut(s)	1353
PciI	ACATGT	1 cut(s)	618
PciSI	GCTCTTC	1 cut(s)	2008
PctI	GAATGC	1 cut(s)	1308
PdiI	GCCGGC	1 cut(s)	497
PdmI	GAANNNNTTC	2 cut(s)	2002, 2211
PfeI	GAWTC	6 cut(s)	328, 962, 1070, 1219, 1876, 1898
PinAI	ACCGGT	1 cut(s)	827
PleI	GAGTC	3 cut(s)	2735, 2812, 2932
PpsI	GAGTC	3 cut(s)	2735, 2812, 2932
PpuMI	RGGWCCY	1 cut(s)	1347
PscI	ACATGT	1 cut(s)	618
Psp5II	RGGWCCY	1 cut(s)	1347
Psp6I	CCWGG	3 cut(s)	1086, 1352, 1383
PspEI	GGTNACC	1 cut(s)	2404
PspGI	CCWGG	3 cut(s)	1086, 1352, 1383
PspN4I	GGNNCC	9 cut(s)	164, 494, 639, 1085, 1242, 1349, 1688, 2202, 2353
PspPI	GGNCC	6 cut(s)	752, 1178, 1347, 1381, 1483, 1687
PspPPI	RGGWCCY	1 cut(s)	1347
PstI	CTGCAG	1 cut(s)	2698
PstNI	CAGNNNCTG	3 cut(s)	634, 1520, 2108
PsuI	RGATCY	3 cut(s)	1732, 1948, 2200
RsaI	GTAC	6 cut(s)	533, 599, 1242, 1428, 2037, 2505
RsaNI	GTAC	6 cut(s)	532, 598, 1241, 1427, 2036, 2504
RseI	CAYNNNNRTG	5 cut(s)	291, 1884, 1957, 2043, 2760
Rsr2I	CGGWCCG	1 cut(s)	1178
RsrII	CGGWCCG	1 cut(s)	1178
SalI	GTCGAC	1 cut(s)	1857
SapI	GCTCTTC	1 cut(s)	2008
Sau3AI	GATC	8 cut(s)	221, 295, 946, 1732, 1948, 2200, 2320, 2616
Sau96I	GGNCC	6 cut(s)	752, 1178, 1347, 1381, 1483, 1687
SchI	GAGTC	3 cut(s)	2735, 2812, 2933
ScrFI	CCNGG	7 cut(s)	207, 312, 1088, 1354, 1385, 1685, 1742
SduI	GDGCHC	3 cut(s)	157, 1281, 2317
SfaNI	GCATC	6 cut(s)	958, 2179, 2209, 2356, 2495, 2572
SfcI	CTRYAG	2 cut(s)	1626, 2694
SfuI	TTCGAA	1 cut(s)	70
SinI	GGWCC	4 cut(s)	752, 1178, 1347, 1483
SmiMI	CAYNNNNRTG	5 cut(s)	291, 1884, 1957, 2043, 2760
SmlI	CTYRAG	3 cut(s)	242, 542, 1850
SmoI	CTYRAG	3 cut(s)	242, 542, 1850
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	8 cut(s)	369, 504, 1364, 1455, 1862, 1916, 2163, 2828
StyD4I	CCNGG	7 cut(s)	205, 310, 1086, 1352, 1383, 1683, 1740
StyI	CCWWGG	5 cut(s)	54, 670, 705, 727, 2080
TaaI	ACNGT	5 cut(s)	480, 1178, 1293, 2278, 2508
TaiI	ACGT	4 cut(s)	1795, 2288, 2350, 2919
TaqI	TCGA	7 cut(s)	70, 224, 331, 1858, 2443, 2670, 2805
TaqII	GACCGA	1 cut(s)	584
TatI	WGTACW	2 cut(s)	597, 2035
TauI	GCSGC	4 cut(s)	490, 590, 726, 746
TfiI	GAWTC	6 cut(s)	328, 962, 1070, 1219, 1876, 1898
TscAI	CASTG	5 cut(s)	349, 400, 1047, 1495, 1964
TseFI	GTSAC	7 cut(s)	1006, 1558, 1604, 2299, 2404, 2897, 2925
TseI	GCWGC	6 cut(s)	860, 1327, 2075, 2159, 2396, 2438
Tsp45I	GTSAC	7 cut(s)	1006, 1558, 1604, 2299, 2404, 2897, 2925
TspGWI	ACGGA	1 cut(s)	1648
TspRI	CASTG	5 cut(s)	349, 400, 1047, 1495, 1964
Vha464I	CTTAAG	1 cut(s)	542
VpaK11BI	GGWCC	4 cut(s)	752, 1178, 1347, 1483
XapI	RAATTY	5 cut(s)	271, 1012, 2552, 2586, 2653
XceI	RCATGY	3 cut(s)	622, 1595, 2759
XmiI	GTMKAC	1 cut(s)	1858
XmnI	GAANNNNTTC	2 cut(s)	2002, 2211
XspI	CTAG	8 cut(s)	369, 504, 1364, 1455, 1862, 1916, 2163, 2828
ZraI	GACGTC	1 cut(s)	2286
Zsp2I	ATGCAT	2 cut(s)	804, 2224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.