Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003739

Physical Location & Seq

Genomic Coordinates Forward (+)

4895057 .. 4900871

Gene Structure 5815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g06760.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2640 bp

ATGTTGATTAAGCTCACATCATCACCAAACGGTTTAAGAAAAGGGTTGAGGGCTTTAGGCTGCTGCTTGCTCACTGGTTTGCTTCTTCCTCTCCTCTCTCTTCCTCCCTCTCTCTCTCTCTTTGATGAATTTGATTGCGTCTCCGAATGCCTTCTTCGAACCATTTCCTCGGATCCCACTCTCATCTCTCTCACCAATTCATCTCCTCCAAAAATATTTGATTTTTTTAATTTGATGTCCTGCATCCAAACCCCATTTCCCCCTGCAAATACCACCAAGAATTGCGCATTTCAAATCCCCATAGTTTTCCACAAGAGCCCATCAATGATATCCACTAGTTTGTGGAGAAACTTGGCTAAGCAGGCCATTTCCGGGAACCAGAGGTGTCGTCTCAGTTCACAGTCTATTTCTAGGGCTTATAGCCTTCTGAGGTTTTCCCGGGAATCTGTTTTCTCGGAAAAGTTCAAGCCTTTTGAGACGGGTTCTTGCTTAAAGGGTTTTCCGGAGGTGGGTTTTTGCGGGAAAGGTGAGATTTCTTCAGGTGAGAGTTATATGGGGAATCCAAGTTTGGGGTCTGTGAGGAATCCGATTGGGTTTAATGGGTTTTGCCCCAAAGGGTATGCAAGTGTCGCGGAGGCGGTTTCTTCCACTGATGCCGAGGAGGATGTATCTGTTGTTGATGAAGTTCAAGAGCTATTGCAGCAAATGAGTAAAGAGGGTAAGAGGCAGACGGATCATTGGCGGCGGATGCGGCAGAAGAGAGTGAGAGGAATGGGGCAGGCGAAGTACCTTGCGCTAAAGAGAAGACAGATAAAGATTGAGACTGAAGCGTGGGAACGGGCGGCGAAGGAGTATAGGGAGCTTATGATGGACATGTGTGAGCACAAGTTAGCTCCCAATTTGCCATACATGAAGTCTTTGTTTCTTGGTTGGTTTGAGCCTCTGCGCAATGCCATTGAACACGAGCAAGACCTGTGCCGGAAGGGGAAGAATAAGGCGGCCTATGCGCCTTATTTTGATCAGTTACCGGCTGATATGATGTCGGTTATTACAATGCATAAGCTGATGGGATTGTTGATGACTGGAGGCGAACATGGAACTTGCAGGGTGGTAGCAGCTGCTTGCACCATAGGTGAAGCCATTGAGCAGGAGGTTAGAATACACAATTTTTTGGAACAGACGAGAAAGAAAAAGGTCAACAAAGATGAGGAAAACCAAGAGTCTGATGATGTCATGAAGGAACAAGAGAAGCTGAATAAAAAGGTTACGAAATTGATGAAAAAGAAAAAACTGCGAGCAGTGAGACATATAGTGAGGAAATATGATGCTTCAAAACCCTGGAGCCTGGAAGCCAAGGCTAAGGTCGGCAGTCGTCTGATTGAACTGTTGATTCAAACGGCTTTTATACAACCTCCGGCTGATCAGTCAGCAGATTCTCCACCAGATATACGACCTGCATTTGTACACACACTTACGACTGTCACAAAAGATCCAAGGAATACCACCAGCAGAAGATTTGGTGTTATTCAATGCAACCCTCTTGTTCTCAAAGGCCTTGAGAAAACAGCAAGTCACATGGTGATTCCTTATATGCCAATGTTGGTACCACCAGTCAACTGGATAGGTTATGATAGAGGAGGTTACTTTTTTCTACCATCCTATGTCATGCGCACTCATGGAGCTAAACAGCAGCGTGAAGCAATTAAGAAGACCCCAAGGCAGCAACTGGAACCAGTTTTTAAGGCCCTGGACACACTTGGAAATACCAGATGGAGGGTTAATAAGAGGGTACTTAATGTTGTAGATAGAATATGGGCTAGTGGAGGCCGTCTTGCTGATTTGGTGGACCGTGATAATGTTCCATTACCAGAGGAACCAGATACTGATGATGAAACACTGCTTAAGAAATGGAAATGGAAGGTGAAGTCTGCGAAGAAAGAGAACATGGAGAGGCATTCACAGCGTTGTGACTTGGAGCTTAAACTAACTGTAGCACGGAAGATGAAGGATGAAGAAGGTTTTTATTATCCACACAATCTTGACTTTCGGGGCCGTGCATATCCTATGCACCCATACTTAAATCATCTTGGTTCAGATCGCGTATCCCGGGGTATTTTGGAGTTTGCAGAGGGACGCCCCCTTGGAAAGTCAGGCTTACGTTGGCTAAAGATACACTTGGCAAATCTGTATGGGAGCAGTGTGGACAAATTATCTCGCGAGGGTCGAATAGCATTTATAGAGAGTCATTTAGATGATATATTTGATTCTGTGGACAGACCACTAGAAGGAAGACGCTGGTGGTTGAAGGCTGAAGATCCATTTCAATGCTTGGCTGTGTGCATTAACCTTGCGGAAGCTTTGAGAAGCTCTTCTCCAGAGACTTTTATTTCAAATATTCCCGTACATCAGGATGGCTCTTGCAATGGTTTACAACACTATGCCGCCCTTGGAAGAGACAAGTTGGGAGCAGCTGCCGTCAATCTTGTTGCAGGAGAGAAGCCTGCAGATGTATACTCAGGAATAGCTGCTAGGGTACTGGAAATCATGCGAAGGGATGCACAGAAGGATCGTTCAGTTTTTCCAGAGGCATTGCTTGCAAAAGTATTAGACGAGACATGCAGGTGGATAGAAAATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

880

Amino Acids

99.63

Weight (kDa)

9.25

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15700 AT5G15700
fragaria_vesca	FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120
malus_domestica	MD09G1076800.v1.1 MD15G1148800.v1.1 MD17G1067300.v1.1
prunus_persica	Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1
pyrus_communis	pycom09g00400 pycom17g06760
rosa_chinensis	RchiOBHm_Chr2g0164571
rosa_laevigata	RLG00000021466
rosa_multiflora	Rmu_co8270321.1_g000001 Rmu_sc0020353.1_g000005 Rmu_ssc0000076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086480
rosa_rugosa	Rorug02G0509000 Rorug02G0509100 Rorug02G0509100 Rorug02G0509200.1
rosa_samantha	Rh2AG576800 Rh2BG587900 Rh2CG558700 Rh2DG598500
rosa_wichuraiana	Rw2G047890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2610
Acc16I	TGCGCA	3 cut(s)	286, 947, 1670
Acc36I	ACCTGC	2 cut(s)	1462, 2610
Acc65I	GGTACC	1 cut(s)	1603
AccB1I	GGYRCC	1 cut(s)	1603
AccI	GTMKAC	1 cut(s)	2511
AccII	CGCG	3 cut(s)	632, 2100, 2217
AccIII	TCCGGA	1 cut(s)	502
AclWI	GGATC	6 cut(s)	167, 180, 741, 1484, 2309, 2574
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	3 cut(s)	522, 846, 2331
AcyI	GRCGYC	1 cut(s)	2134
AdeI	CACNNNGTG	1 cut(s)	1579
AfaI	GTAC	6 cut(s)	788, 1464, 1605, 1791, 2403, 2535
AfiI	CCNNNNNNNGG	5 cut(s)	372, 509, 569, 1773, 2285
AflII	CTTAAG	1 cut(s)	1901
AflIII	ACRYGT	1 cut(s)	873
AhlI	ACTAGT	1 cut(s)	335
AjnI	CCWGG	3 cut(s)	1337, 1344, 1746
AjuI	GAANNNNNNNTTGG	4 cut(s)	240, 272, 551, 583
Alw21I	GWGCWC	1 cut(s)	885
Alw26I	GTCTC	8 cut(s)	145, 395, 470, 815, 1297, 2372, 2448, 2606
AlwI	GGATC	6 cut(s)	167, 180, 741, 1484, 2309, 2574
AlwNI	CAGNNNCTG	2 cut(s)	1726, 1883
Ama87I	CYCGRG	2 cut(s)	438, 2106
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	6 cut(s)	363, 999, 1552, 1743, 1825, 2050
ApoI	RAATTY	1 cut(s)	128
Asp700I	GAANNNNTTC	3 cut(s)	150, 163, 2368
Asp718I	GGTACC	1 cut(s)	1603
AspLEI	GCGC	5 cut(s)	287, 796, 948, 1009, 1671
AspS9I	GGNCC	3 cut(s)	1744, 1846, 2050
AsuC2I	CCSGG	5 cut(s)	373, 439, 440, 2107, 2108
AsuHPI	GGTGA	7 cut(s)	15, 184, 539, 554, 1145, 1591, 1933
AsuII	TTCGAA	1 cut(s)	157
AvaI	CYCGRG	2 cut(s)	438, 2106
AvaII	GGWCC	1 cut(s)	1846
BamHI	GGATCC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	1603
BanII	GRGCYC	1 cut(s)	320
BauI	CACGAG	1 cut(s)	962
BbsI	GAAGAC	3 cut(s)	811, 1715, 2296
Bbv12I	GWGCWC	1 cut(s)	885
BccI	CCATC	6 cut(s)	328, 862, 1060, 1663, 1764, 2405
BceAI	ACGGC	4 cut(s)	1413, 1812, 2037, 2459
BciT130I	CCWGG	3 cut(s)	1339, 1346, 1748
BciVI	GTATCC	1 cut(s)	2113
BclI	TGATCA	2 cut(s)	1018, 1420
BcnI	CCSGG	5 cut(s)	373, 439, 440, 2107, 2108
BcoDI	GTCTC	8 cut(s)	145, 395, 470, 815, 1297, 2372, 2448, 2606
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	5 cut(s)	336, 411, 1818, 2282, 2529
BfmI	CTRYAG	2 cut(s)	1989, 2502
BfrI	CTTAAG	1 cut(s)	1901
BfuAI	ACCTGC	2 cut(s)	1462, 2610
BfuI	GTATCC	1 cut(s)	2113
BlpI	GCTNAGC	1 cut(s)	357
Bme1390I	CCNGG	8 cut(s)	373, 439, 440, 1339, 1346, 1748, 2107, 2108
Bme18I	GGWCC	1 cut(s)	1846
BmeT110I	CYCGRG	2 cut(s)	438, 2106
BmgT120I	GGNCC	3 cut(s)	1744, 1846, 2050
BmiI	GGNNCC	7 cut(s)	174, 377, 1343, 1605, 1731, 1875, 2051
BmrFI	CCNGG	8 cut(s)	373, 439, 440, 1339, 1346, 1748, 2107, 2108
BmsI	GCATC	5 cut(s)	252, 643, 738, 1315, 2545
BpiI	GAAGAC	3 cut(s)	811, 1715, 2296
BpmI	CTGGAG	3 cut(s)	1104, 1360, 2358
Bpu10I	CCTNAGC	1 cut(s)	1359
Bpu1102I	GCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	1577
BpuMI	CCSGG	5 cut(s)	373, 439, 440, 2107, 2108
BsaHI	GRCGYC	1 cut(s)	2134
BsaWI	WCCGGW	1 cut(s)	502
Bsc4I	CCNNNNNNNGG	5 cut(s)	372, 509, 569, 1773, 2285
Bse118I	RCCGGY	1 cut(s)	1027
Bse1I	ACTGG	7 cut(s)	79, 1087, 1610, 1622, 1731, 1733, 2541
Bse3DI	GCAATG	3 cut(s)	955, 2428, 2588
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	3 cut(s)	1339, 1346, 1748
BseGI	GGATG	7 cut(s)	243, 670, 753, 1655, 2014, 2416, 2560
BseLI	CCNNNNNNNGG	5 cut(s)	372, 509, 569, 1773, 2285
BseMI	GCAATG	3 cut(s)	955, 2428, 2588
BseMII	CTCAG	3 cut(s)	406, 419, 2529
BseNI	ACTGG	7 cut(s)	79, 1087, 1610, 1622, 1731, 1733, 2541
BseRI	GAGGAG	4 cut(s)	83, 195, 674, 1650
Bsh1236I	CGCG	3 cut(s)	632, 2100, 2217
BshFI	GGCC	6 cut(s)	365, 1001, 1554, 1745, 1827, 2052
BshNI	GGYRCC	1 cut(s)	1603
BsiHKAI	GWGCWC	1 cut(s)	885
BsiHKCI	CYCGRG	2 cut(s)	438, 2106
BsiSI	CCGG	7 cut(s)	372, 439, 503, 979, 1028, 1415, 2107
BslFI	GGGAC	1 cut(s)	2145
BslI	CCNNNNNNNGG	5 cut(s)	372, 509, 569, 1773, 2285
BsmAI	GTCTC	8 cut(s)	145, 395, 470, 815, 1297, 2372, 2448, 2606
BsmBI	CGTCTC	3 cut(s)	145, 395, 470
BsmFI	GGGAC	1 cut(s)	2145
BsmI	GAATGC	2 cut(s)	152, 1954
BsnI	GGCC	6 cut(s)	365, 1001, 1554, 1745, 1827, 2052
BsoBI	CYCGRG	2 cut(s)	438, 2106
Bsp119I	TTCGAA	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	320, 885
Bsp13I	TCCGGA	1 cut(s)	502
Bsp1407I	TGTACA	1 cut(s)	1462
Bsp143I	GATC	8 cut(s)	172, 733, 1018, 1420, 1489, 2095, 2314, 2566
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp68I	TCGCGA	1 cut(s)	2217
BspANI	GGCC	6 cut(s)	365, 1001, 1554, 1745, 1827, 2052
BspCNI	CTCAG	3 cut(s)	405, 420, 2528
BspEI	TCCGGA	1 cut(s)	502
BspFNI	CGCG	3 cut(s)	632, 2100, 2217
BspHI	TCATGA	1 cut(s)	1233
BspLI	GGNNCC	7 cut(s)	174, 377, 1343, 1605, 1731, 1875, 2051
BspMAI	CTGCAG	1 cut(s)	2506
BspMI	ACCTGC	2 cut(s)	1462, 2610
BspPI	GGATC	6 cut(s)	167, 180, 741, 1484, 2309, 2574
BspQI	GCTCTTC	1 cut(s)	2374
BspT104I	TTCGAA	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	1603
BspTI	CTTAAG	1 cut(s)	1901
BsrDI	GCAATG	3 cut(s)	955, 2428, 2588
BsrFI	RCCGGY	1 cut(s)	1027
BsrGI	TGTACA	1 cut(s)	1462
BsrI	ACTGG	7 cut(s)	79, 1087, 1610, 1622, 1731, 1733, 2541
BssAI	RCCGGY	1 cut(s)	1027
BssMI	GATC	8 cut(s)	172, 733, 1018, 1420, 1489, 2095, 2314, 2566
BssNAI	GTATAC	1 cut(s)	2512
BssNI	GRCGYC	1 cut(s)	2134
BssSI	CACGAG	1 cut(s)	962
BssT1I	CCWWGG	5 cut(s)	1353, 1493, 1715, 2140, 2446
Bst1107I	GTATAC	1 cut(s)	2512
Bst2BI	CACGAG	1 cut(s)	962
Bst2UI	CCWGG	3 cut(s)	1339, 1346, 1748
Bst4CI	ACNGT	6 cut(s)	32, 402, 1386, 1480, 1850, 1990
Bst6I	CTCTTC	4 cut(s)	105, 752, 2374, 2446
BstACI	GRCGYC	1 cut(s)	2134
BstAFI	CTTAAG	1 cut(s)	1901
BstAPI	GCANNNNNTGC	1 cut(s)	2594
BstAUI	TGTACA	1 cut(s)	1462
BstBI	TTCGAA	1 cut(s)	157
BstC8I	GCNNGC	7 cut(s)	68, 363, 780, 1123, 1296, 2502, 2595
BstDEI	CTNAG	5 cut(s)	357, 392, 428, 1359, 2515
BstF5I	GGATG	7 cut(s)	243, 670, 753, 1655, 2014, 2416, 2560
BstFNI	CGCG	3 cut(s)	632, 2100, 2217
BstHHI	GCGC	5 cut(s)	287, 796, 948, 1009, 1671
BstKTI	GATC	8 cut(s)	175, 736, 1021, 1423, 1492, 2098, 2317, 2569
BstMAI	GTCTC	8 cut(s)	145, 395, 470, 815, 1297, 2372, 2448, 2606
BstMBI	GATC	8 cut(s)	172, 733, 1018, 1420, 1489, 2095, 2314, 2566
BstMWI	GCNNNNNNNGC	8 cut(s)	362, 629, 700, 748, 751, 1004, 1960, 2594
BstNI	CCWGG	3 cut(s)	1339, 1346, 1748
BstNSI	RCATGY	2 cut(s)	877, 2619
BstSCI	CCNGG	8 cut(s)	371, 437, 438, 1337, 1344, 1746, 2105, 2106
BstSFI	CTRYAG	2 cut(s)	1989, 2502
BstUI	CGCG	3 cut(s)	632, 2100, 2217
BstV2I	GAAGAC	3 cut(s)	811, 1715, 2296
BstX2I	RGATCY	3 cut(s)	172, 1489, 2314
BstXI	CCANNNNNNTGG	1 cut(s)	1617
BstYI	RGATCY	3 cut(s)	172, 1489, 2314
BstZ17I	GTATAC	1 cut(s)	2512
BsuI	GTATCC	1 cut(s)	2113
BsuRI	GGCC	6 cut(s)	365, 1001, 1554, 1745, 1827, 2052
BtsCI	GGATG	7 cut(s)	243, 670, 753, 1655, 2014, 2416, 2560
BtsI	GCAGTG	3 cut(s)	1305, 1895, 2203
BtsIMutI	CAGTG	5 cut(s)	72, 648, 1305, 1895, 2203
BtuMI	TCGCGA	1 cut(s)	2217
BveI	ACCTGC	2 cut(s)	1462, 2610
Cac8I	GCNNGC	7 cut(s)	68, 363, 780, 1123, 1296, 2502, 2595
CaiI	CAGNNNCTG	2 cut(s)	1726, 1883
CciI	TCATGA	1 cut(s)	1233
CfoI	GCGC	5 cut(s)	287, 796, 948, 1009, 1671
Cfr10I	RCCGGY	1 cut(s)	1027
Cfr13I	GGNCC	3 cut(s)	1744, 1846, 2050
Cfr9I	CCCGGG	2 cut(s)	438, 2106
CseI	GACGC	3 cut(s)	127, 2142, 2301
Csp6I	GTAC	6 cut(s)	787, 1463, 1604, 1790, 2402, 2534
CviQI	GTAC	6 cut(s)	787, 1463, 1604, 1790, 2402, 2534
DdeI	CTNAG	5 cut(s)	357, 392, 428, 1359, 2515
DpnI	GATC	8 cut(s)	174, 735, 1020, 1422, 1491, 2097, 2316, 2568
DpnII	GATC	8 cut(s)	172, 733, 1018, 1420, 1489, 2095, 2314, 2566
DraIII	CACNNNGTG	1 cut(s)	1579
Eam1104I	CTCTTC	4 cut(s)	105, 752, 2374, 2446
EarI	CTCTTC	4 cut(s)	105, 752, 2374, 2446
EciI	GGCGGA	1 cut(s)	760
Eco130I	CCWWGG	5 cut(s)	1353, 1493, 1715, 2140, 2446
Eco147I	AGGCCT	1 cut(s)	1554
Eco24I	GRGCYC	1 cut(s)	320
Eco32I	GATATC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	1846
Eco57I	CTGAAG	3 cut(s)	522, 846, 2331
Eco88I	CYCGRG	2 cut(s)	438, 2106
EcoO109I	RGGNCCY	1 cut(s)	1744
EcoRII	CCWGG	3 cut(s)	1337, 1344, 1746
EcoRV	GATATC	1 cut(s)	330
EcoT14I	CCWWGG	5 cut(s)	1353, 1493, 1715, 2140, 2446
EcoT22I	ATGCAT	1 cut(s)	1059
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	5 cut(s)	1353, 1493, 1715, 2140, 2446
Esp3I	CGTCTC	3 cut(s)	145, 395, 470
FalI	AAGNNNNNCTT	4 cut(s)	2138, 2170, 2159, 2191
FaqI	GGGAC	1 cut(s)	2145
FauI	CCCGC	1 cut(s)	512
FbaI	TGATCA	2 cut(s)	1018, 1420
FblI	GTMKAC	1 cut(s)	2511
FokI	GGATG	7 cut(s)	230, 677, 760, 1642, 2021, 2423, 2567
FriOI	GRGCYC	1 cut(s)	320
FspAI	RTGCGCAY	1 cut(s)	1670
FspBI	CTAG	5 cut(s)	336, 411, 1818, 2282, 2529
FspI	TGCGCA	3 cut(s)	286, 947, 1670
GlaI	GCGC	5 cut(s)	286, 795, 947, 1008, 1670
GsuI	CTGGAG	3 cut(s)	1104, 1360, 2358
HaeIII	GGCC	6 cut(s)	365, 1001, 1554, 1745, 1827, 2052
HapII	CCGG	7 cut(s)	372, 439, 503, 979, 1028, 1415, 2107
HgaI	GACGC	3 cut(s)	127, 2142, 2301
HhaI	GCGC	5 cut(s)	287, 796, 948, 1009, 1671
Hin1I	GRCGYC	1 cut(s)	2134
Hin6I	GCGC	5 cut(s)	285, 794, 946, 1007, 1669
HinP1I	GCGC	5 cut(s)	285, 794, 946, 1007, 1669
HincII	GTYRAC	2 cut(s)	1198, 1615
HindII	GTYRAC	2 cut(s)	1198, 1615
HindIII	AAGCTT	1 cut(s)	2355
HinfI	GANTC	9 cut(s)	443, 559, 583, 1220, 1390, 1433, 1582, 2242, 2264
HpaII	CCGG	7 cut(s)	372, 439, 503, 979, 1028, 1415, 2107
HphI	GGTGA	7 cut(s)	15, 184, 539, 554, 1145, 1591, 1933
Hpy166II	GTNNAC	9 cut(s)	398, 1198, 1465, 1615, 1846, 2203, 2272, 2429, 2512
Hpy188I	TCNGA	8 cut(s)	145, 172, 429, 457, 588, 1225, 1377, 2095
Hpy188III	TCNNGA	9 cut(s)	503, 689, 1234, 2039, 2216, 2375, 2408, 2517, 2582
Hpy8I	GTNNAC	9 cut(s)	398, 1198, 1465, 1615, 1846, 2203, 2272, 2429, 2512
HpyCH4III	ACNGT	6 cut(s)	32, 402, 1386, 1480, 1850, 1990
HpyCH4IV	ACGT	1 cut(s)	2158
HpyF10VI	GCNNNNNNNGC	8 cut(s)	362, 629, 700, 748, 751, 1004, 1960, 2594
HpyF3I	CTNAG	5 cut(s)	357, 392, 428, 1359, 2515
HpySE526I	ACGT	1 cut(s)	2158
Hsp92I	GRCGYC	1 cut(s)	2134
HspAI	GCGC	5 cut(s)	285, 794, 946, 1007, 1669
Kpn2I	TCCGGA	1 cut(s)	502
KpnI	GGTACC	1 cut(s)	1607
Ksp22I	TGATCA	2 cut(s)	1018, 1420
Kzo9I	GATC	8 cut(s)	172, 733, 1018, 1420, 1489, 2095, 2314, 2566
LguI	GCTCTTC	1 cut(s)	2374
LmnI	GCTCC	7 cut(s)	859, 898, 1341, 1679, 1975, 2193, 2465
LweI	GCATC	5 cut(s)	252, 643, 738, 1315, 2545
MaeI	CTAG	5 cut(s)	336, 411, 1818, 2282, 2529
MaeII	ACGT	1 cut(s)	2158
MaeIII	GTNAC	6 cut(s)	1023, 1264, 1480, 1571, 1640, 1967
MalI	GATC	8 cut(s)	174, 735, 1020, 1422, 1491, 2097, 2316, 2568
MboI	GATC	8 cut(s)	172, 733, 1018, 1420, 1489, 2095, 2314, 2566
MflI	RGATCY	3 cut(s)	172, 1489, 2314
MhlI	GDGCHC	2 cut(s)	320, 885
MlyI	GAGTC	2 cut(s)	1229, 2251
Mph1103I	ATGCAT	1 cut(s)	1059
MroI	TCCGGA	1 cut(s)	502
MroXI	GAANNNNTTC	3 cut(s)	150, 163, 2368
MslI	CAYNNNNRTG	4 cut(s)	2250, 2323, 2409, 2620
MspA1I	CMGCKG	2 cut(s)	1118, 2471
MspCI	CTTAAG	1 cut(s)	1901
MspI	CCGG	7 cut(s)	372, 439, 503, 979, 1028, 1415, 2107
MspR9I	CCNGG	8 cut(s)	373, 439, 440, 1339, 1346, 1748, 2107, 2108
Mva1269I	GAATGC	2 cut(s)	152, 1954
MvaI	CCWGG	3 cut(s)	1339, 1346, 1748
MvnI	CGCG	3 cut(s)	632, 2100, 2217
MwoI	GCNNNNNNNGC	8 cut(s)	362, 629, 700, 748, 751, 1004, 1960, 2594
NciI	CCSGG	5 cut(s)	373, 439, 440, 2107, 2108
NdeII	GATC	8 cut(s)	172, 733, 1018, 1420, 1489, 2095, 2314, 2566
NlaIV	GGNNCC	7 cut(s)	174, 377, 1343, 1605, 1731, 1875, 2051
NmeAIII	GCCGAG	1 cut(s)	682
NmuCI	GTSAC	3 cut(s)	1480, 1571, 1967
NruI	TCGCGA	1 cut(s)	2217
NsbI	TGCGCA	3 cut(s)	286, 947, 1670
NsiI	ATGCAT	1 cut(s)	1059
NspI	RCATGY	2 cut(s)	877, 2619
NspV	TTCGAA	1 cut(s)	157
PagI	TCATGA	1 cut(s)	1233
PaqCI	CACCTGC	1 cut(s)	2610
PceI	AGGCCT	1 cut(s)	1554
PciI	ACATGT	1 cut(s)	873
PciSI	GCTCTTC	1 cut(s)	2374
PcsI	WCGNNNNNNNCGW	1 cut(s)	2221
PctI	GAATGC	2 cut(s)	152, 1954
PdmI	GAANNNNTTC	3 cut(s)	150, 163, 2368
PfeI	GAWTC	7 cut(s)	443, 559, 583, 1390, 1433, 1582, 2264
PfoI	TCCNGGA	1 cut(s)	371
PleI	GAGTC	2 cut(s)	1228, 2250
PpsI	GAGTC	2 cut(s)	1228, 2250
PscI	ACATGT	1 cut(s)	873
Psp6I	CCWGG	3 cut(s)	1337, 1344, 1746
PspGI	CCWGG	3 cut(s)	1337, 1344, 1746
PspN4I	GGNNCC	7 cut(s)	174, 377, 1343, 1605, 1731, 1875, 2051
PspPI	GGNCC	3 cut(s)	1744, 1846, 2050
PstI	CTGCAG	1 cut(s)	2506
PstNI	CAGNNNCTG	2 cut(s)	1726, 1883
PsuI	RGATCY	3 cut(s)	172, 1489, 2314
PvuII	CAGCTG	2 cut(s)	1118, 2471
RruI	TCGCGA	1 cut(s)	2217
RsaI	GTAC	6 cut(s)	788, 1464, 1605, 1791, 2403, 2535
RsaNI	GTAC	6 cut(s)	787, 1463, 1604, 1790, 2402, 2534
RseI	CAYNNNNRTG	4 cut(s)	2250, 2323, 2409, 2620
SapI	GCTCTTC	1 cut(s)	2374
Sau3AI	GATC	8 cut(s)	172, 733, 1018, 1420, 1489, 2095, 2314, 2566
Sau96I	GGNCC	3 cut(s)	1744, 1846, 2050
SchI	GAGTC	2 cut(s)	1229, 2251
ScrFI	CCNGG	8 cut(s)	373, 439, 440, 1339, 1346, 1748, 2107, 2108
SduI	GDGCHC	2 cut(s)	320, 885
SfaNI	GCATC	5 cut(s)	252, 643, 738, 1315, 2545
SfcI	CTRYAG	2 cut(s)	1989, 2502
SfuI	TTCGAA	1 cut(s)	157
SinI	GGWCC	1 cut(s)	1846
SmaI	CCCGGG	2 cut(s)	440, 2108
SmiMI	CAYNNNNRTG	4 cut(s)	2250, 2323, 2409, 2620
SmlI	CTYRAG	2 cut(s)	1556, 1901
SmoI	CTYRAG	2 cut(s)	1556, 1901
SpeI	ACTAGT	1 cut(s)	335
SseBI	AGGCCT	1 cut(s)	1554
SspI	AATATT	2 cut(s)	216, 2395
SspMI	CTAG	5 cut(s)	336, 411, 1818, 2282, 2529
StuI	AGGCCT	1 cut(s)	1554
StyD4I	CCNGG	8 cut(s)	371, 437, 438, 1337, 1344, 1746, 2105, 2106
StyI	CCWWGG	5 cut(s)	1353, 1493, 1715, 2140, 2446
TaaI	ACNGT	6 cut(s)	32, 402, 1386, 1480, 1850, 1990
TaiI	ACGT	1 cut(s)	2161
TaqI	TCGA	2 cut(s)	157, 2224
TatI	WGTACW	1 cut(s)	1462
TauI	GCSGC	5 cut(s)	745, 754, 845, 1001, 2444
TfiI	GAWTC	7 cut(s)	443, 559, 583, 1390, 1433, 1582, 2264
TscAI	CASTG	5 cut(s)	79, 655, 1305, 1902, 2203
TseFI	GTSAC	3 cut(s)	1480, 1571, 1967
Tsp45I	GTSAC	3 cut(s)	1480, 1571, 1967
TspDTI	ATGAA	9 cut(s)	141, 189, 696, 926, 1250, 1292, 1905, 2018, 2025
TspGWI	ACGGA	2 cut(s)	746, 2011
TspMI	CCCGGG	2 cut(s)	438, 2106
TspRI	CASTG	5 cut(s)	79, 655, 1305, 1902, 2203
Vha464I	CTTAAG	1 cut(s)	1901
VpaK11BI	GGWCC	1 cut(s)	1846
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	2 cut(s)	877, 2619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1614
XmaI	CCCGGG	2 cut(s)	438, 2106
XmiI	GTMKAC	1 cut(s)	2511
XmnI	GAANNNNTTC	3 cut(s)	150, 163, 2368
XspI	CTAG	5 cut(s)	336, 411, 1818, 2282, 2529
Zsp2I	ATGCAT	1 cut(s)	1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.