Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003739

Physical Location & Seq

Genomic Coordinates Reverse (-)

73696674 .. 73705266

Gene Structure 8593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG558700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGCATCAGGTTAGAATACACAACTTCTTGGAAAGGACAAAAAAGAAAAAGGTTGGTAAAGATCAGGAAACCGGAGAATCTGATGCTATGATGAAGGAAAATGAGAAGCTGAATAAAAAGGTCACAAATTTGATGAAAAAACAAAAAATGCAAGCAGTGAGGCACATAGTGAGGGGACATGATGATTCAAAAGGCTGGAGCCAGGAAGCAAAGGCTAAGGTTGGCAGTCGTTTGATTGAATTGTTGACCCAAACAGCTTTTATACAACCTCCGGCTAATCAGTTAGGGGACGGTCTGCTGGACATACGACCTGCATTTGTGCACACATTTAGGACTGTGAGCAAAGATGCAAAGAACAGTAGCAGAAGATATGGTGTTGTTGAATGTGATCCTCTCGTTCTCAAAGGGCTTGAGAGAACAGCAAGGCACATGGTGATTCCTTATATGCCCATGTTGGTACCCCCACTCAATTGGACAGGTTATGACAAGGGAGGGCACTTTTTCCTACCGTCATATGTCATGCGCATTCATGGAGCTAAACAGCAGCGTGAAGCAGTTAAGAGGACCCCCAGGGAACAACTAGAACCAGTTTTTAAGGCCCTGGACACTCTTGGGAATACCAGATGGAGGGTTAATAAGAGGGTACTTAATGTTGTAGATAGGATATGGGCTAGTGGAGGCCGTCTTGCTGATTTGGTGGACCGCAGTGATGTTCCTTTACCAGAGAAACCAGATACTGAAGATGAAACATTGCTTAAAAAATGGAAGTGGAAAGTGACCTCTGTGAAGAAAGAGAACAGGGAGAGACATGCACAGCGTTGTGACATAGAACTTAAACTTGCTGTAGCACGAAAAATGAAGGATGAAGAAGGATTTTACTTTCCACACAATCTTGACTTCCGGGGCCGTGCATATCCTATGCACCCATACTTGAACCATCTTGGTTCAGATCTTTGCCGGGGTATTTTAGAGTTTGCAGAGGGACGCCCTCTTGGAAAGTCAGGCTTACGTTGGCTGAAGATACACTTGGCAAATCTATATGCTGGTGGTGTGGACAAATTATCTCTTGAGGGTCGACTAGCATTTACTGAGAATCATTTGGATGATATATTTGATTCTGTGGACAGACCACTAGAAGGAAGGCGCTGGTGGTTGAAGGCAGAAGATCCATTTCAGTGCTTGGCTGTGTGCATTAACCTCTCTGAAGCTCTAAGAAGCTCTTCTCCAGAGACATTTATCTCACATATTCCTGTACATCAGGATGGCTCGTGCAATGGCTTACAACACTATGCTGCCCTTGGAAGGGACAAGTTAGGAGCAGGTGCTGTCAATCTGGTTGCAGGAGAGAAACCTGCTGATGTTTACTCAGGAATAGCTGCTAGGGTTCTGGCTATCATGCAGAGTGATGCACAGAAGGATCCTGAAGTTTTTCCTGATGCATTGCGTGCAAGAGTGTTAGTTAATCAGGTGGATAGGAAGTTGGTAAAGCAGACTGTGATGACGTCAGTATATGGTGTCACTTATATTGGTGCTCGGGATCAAATCAAGAGGAGGTTGAAGGAACGTGGTGCCATTTCAGATGATGCAGAGGTCTTTGGTTGTGCTTGTTATGCTGCGAAGGTCACCTTAACTGCTTTGGGGGAGATGTTTGAAGCTGCTCGAAGTATCATGAGCTGGCTTGGAGATTGCGCAAAAATAATTGCATCTGAAAATGAGCCAGTACGGTGGACAACTCCACTTGGGCTTCCAGTTGTGCAACCTTACCGAAAATTTGGAAGGCATCTTATTAAAACTTCCCTTCAAATTTTGACATTACAACGAGAAACAGAAAAGATCATGGTCAAGAGGCAGAGGACAGCTTTCCCACCAAATTTTGTTCATTCCCTCGATGGTTCTCATATGATGATGACTGCAGTTGCCTGTAAAAAGGCAGGCTTAAACTTTGCAGGAGTTCATGACTCGTATTGGACACATGCTTGTGATGTGAATGTAATGAACAGGATACTCAGGGAAAAGTTTGTCGAGCTATATGAGACTCCAATACTAGAGAGATTGTCGGAGAGCTTTCAGCAGTCTTTTCCTGAATTAACTTTTCCGCCCTTACCTGAGCGGGGCGACTTTGATTTAAGGGACGTTTTAGAGTCACCTTATTTCTTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

720

Amino Acids

81.89

Weight (kDa)

9.3

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPOL_N	PF14700	3 - 206	2.1e-48	DNA-directed RNA polymerase N-terminal
RNA_pol	PF00940	329 - 694	1.4e-159	DNA-dependent RNA polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15700 AT5G15700
fragaria_vesca	FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120
malus_domestica	MD09G1076800.v1.1 MD15G1148800.v1.1 MD17G1067300.v1.1
prunus_persica	Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1
pyrus_communis	pycom09g00400 pycom17g06760
rosa_chinensis	RchiOBHm_Chr2g0164571
rosa_laevigata	RLG00000021466
rosa_multiflora	Rmu_co8270321.1_g000001 Rmu_sc0020353.1_g000005 Rmu_ssc0000076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086480
rosa_rugosa	Rorug02G0509000 Rorug02G0509100 Rorug02G0509100 Rorug02G0509200.1
rosa_samantha	Rh2AG576800 Rh2BG587900 Rh2CG558700 Rh2DG598500
rosa_wichuraiana	Rw2G047890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1310
AatII	GACGTC	1 cut(s)	1505
Acc16I	TGCGCA	2 cut(s)	524, 1690
Acc36I	ACCTGC	3 cut(s)	319, 1310, 1360
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	2 cut(s)	457, 1568
AccBSI	CCGCTC	1 cut(s)	2110
AccI	GTMKAC	1 cut(s)	1075
AciI	CCGC	3 cut(s)	703, 2096, 2110
AclWI	GGATC	5 cut(s)	383, 1160, 1412, 1425, 1545
AcsI	RAATTY	4 cut(s)	127, 1769, 1803, 1870
AcuI	CTGAAG	4 cut(s)	759, 1037, 1224, 1443
AcyI	GRCGYC	2 cut(s)	985, 1502
AdeI	CACNNNGTG	2 cut(s)	169, 433
AfaI	GTAC	4 cut(s)	459, 645, 1254, 1722
AfiI	CCNNNNNNNGG	5 cut(s)	627, 1136, 1302, 1303, 2111
AgsI	TTSAA	8 cut(s)	189, 239, 383, 934, 1156, 1558, 1652, 1802
AjnI	CCWGG	3 cut(s)	201, 569, 600
AjuI	GAANNNNNNNTTGG	2 cut(s)	1010, 1042
Alw21I	GWGCWC	2 cut(s)	324, 1534
Alw26I	GTCTC	3 cut(s)	799, 1223, 2027
Alw44I	GTGCAC	1 cut(s)	320
AlwI	GGATC	5 cut(s)	383, 1160, 1412, 1425, 1545
AlwNI	CAGNNNCTG	2 cut(s)	737, 1325
Ama87I	CYCGRG	1 cut(s)	1533
AoxI	GGCC	3 cut(s)	597, 679, 904
ApaLI	GTGCAC	1 cut(s)	320
ApeKI	GCWGC	5 cut(s)	544, 1292, 1376, 1613, 1655
ApoI	RAATTY	4 cut(s)	127, 1769, 1803, 1870
Asp700I	GAANNNNTTC	2 cut(s)	1219, 1428
Asp718I	GGTACC	1 cut(s)	457
AspLEI	GCGC	3 cut(s)	525, 1146, 1691
AspS9I	GGNCC	4 cut(s)	564, 598, 700, 904
AsuC2I	CCSGG	2 cut(s)	902, 959
AsuHPI	GGTGA	3 cut(s)	445, 1615, 2136
AvaI	CYCGRG	1 cut(s)	1533
AvaII	GGWCC	2 cut(s)	564, 700
BaeGI	GKGCMC	2 cut(s)	324, 498
BamHI	GGATCC	1 cut(s)	1417
BanI	GGYRCC	2 cut(s)	457, 1568
BauI	CACGAG	1 cut(s)	1267
Bbv12I	GWGCWC	2 cut(s)	324, 1534
BbvI	GCAGC	5 cut(s)	556, 1279, 1363, 1600, 1642
BccI	CCATC	4 cut(s)	618, 945, 1256, 1883
BceAI	ACGGC	2 cut(s)	666, 891
BciT130I	CCWGG	3 cut(s)	203, 571, 602
BciVI	GTATCC	1 cut(s)	1995
BcnI	CCSGG	2 cut(s)	902, 959
BcoDI	GTCTC	3 cut(s)	799, 1223, 2027
BfaI	CTAG	6 cut(s)	581, 672, 1079, 1133, 1380, 2045
BfmI	CTRYAG	2 cut(s)	843, 1911
BfoI	RGCGCY	1 cut(s)	1147
BfuAI	ACCTGC	3 cut(s)	319, 1310, 1360
BfuI	GTATCC	1 cut(s)	1995
BglII	AGATCT	1 cut(s)	949
BisI	GCNGC	5 cut(s)	545, 1293, 1377, 1614, 1656
BlsI	GCNGC	5 cut(s)	546, 1294, 1378, 1615, 1657
Bme1390I	CCNGG	5 cut(s)	203, 571, 602, 902, 959
Bme18I	GGWCC	2 cut(s)	564, 700
BmeT110I	CYCGRG	1 cut(s)	1533
BmgT120I	GGNCC	4 cut(s)	564, 598, 700, 904
BmiI	GGNNCC	6 cut(s)	200, 459, 566, 905, 1419, 1570
BmrFI	CCNGG	5 cut(s)	203, 571, 602, 902, 959
BmsI	GCATC	8 cut(s)	13, 73, 337, 1396, 1426, 1573, 1712, 1789
BpmI	CTGGAG	2 cut(s)	217, 1209
Bpu10I	CCTNAGC	2 cut(s)	216, 2106
BpuEI	CTTGAG	2 cut(s)	431, 1088
BpuMI	CCSGG	2 cut(s)	902, 959
BsaHI	GRCGYC	2 cut(s)	985, 1502
BsaJI	CCNNGG	6 cut(s)	569, 570, 600, 901, 958, 1297
BsaWI	WCCGGW	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	5 cut(s)	627, 1136, 1302, 1303, 2111
Bse1I	ACTGG	3 cut(s)	587, 1718, 1748
Bse3DI	GCAATG	3 cut(s)	749, 1279, 1439
BseBI	CCWGG	3 cut(s)	203, 571, 602
BseDI	CCNNGG	6 cut(s)	569, 570, 600, 901, 958, 1297
BseGI	GGATG	3 cut(s)	868, 1108, 1267
BseLI	CCNNNNNNNGG	5 cut(s)	627, 1136, 1302, 1303, 2111
BseMI	GCAATG	3 cut(s)	749, 1279, 1439
BseMII	CTCAG	4 cut(s)	1080, 1380, 2020, 2097
BseNI	ACTGG	3 cut(s)	587, 1718, 1748
BseRI	GAGGAG	1 cut(s)	1564
BseSI	GKGCMC	2 cut(s)	324, 498
BseXI	GCAGC	5 cut(s)	556, 1279, 1363, 1600, 1642
BshFI	GGCC	3 cut(s)	599, 681, 906
BshNI	GGYRCC	2 cut(s)	457, 1568
BsiHKAI	GWGCWC	2 cut(s)	324, 1534
BsiHKCI	CYCGRG	1 cut(s)	1533
BsiSI	CCGG	4 cut(s)	72, 272, 901, 958
BslFI	GGGAC	5 cut(s)	189, 302, 996, 1319, 2144
BslI	CCNNNNNNNGG	5 cut(s)	627, 1136, 1302, 1303, 2111
BsmAI	GTCTC	3 cut(s)	799, 1223, 2027
BsmFI	GGGAC	5 cut(s)	189, 302, 996, 1319, 2144
BsmI	GAATGC	1 cut(s)	525
BsnI	GGCC	3 cut(s)	599, 681, 906
BsoBI	CYCGRG	1 cut(s)	1533
Bsp1286I	GDGCHC	3 cut(s)	324, 498, 1534
Bsp1407I	TGTACA	1 cut(s)	1252
Bsp143I	GATC	7 cut(s)	61, 388, 949, 1165, 1417, 1537, 1833
BspACI	CCGC	3 cut(s)	703, 2096, 2110
BspANI	GGCC	3 cut(s)	599, 681, 906
BspCNI	CTCAG	4 cut(s)	1081, 1379, 2019, 2098
BspHI	TCATGA	2 cut(s)	1668, 1954
BspLI	GGNNCC	6 cut(s)	200, 459, 566, 905, 1419, 1570
BspMAI	CTGCAG	1 cut(s)	1915
BspMI	ACCTGC	3 cut(s)	319, 1310, 1360
BspPI	GGATC	5 cut(s)	383, 1160, 1412, 1425, 1545
BspQI	GCTCTTC	1 cut(s)	1225
BspT107I	GGYRCC	2 cut(s)	457, 1568
BsrBI	CCGCTC	1 cut(s)	2110
BsrDI	GCAATG	3 cut(s)	749, 1279, 1439
BsrGI	TGTACA	1 cut(s)	1252
BsrI	ACTGG	3 cut(s)	587, 1718, 1748
BssECI	CCNNGG	6 cut(s)	569, 570, 600, 901, 958, 1297
BssMI	GATC	7 cut(s)	61, 388, 949, 1165, 1417, 1537, 1833
BssNI	GRCGYC	2 cut(s)	985, 1502
BssSI	CACGAG	1 cut(s)	1267
BssT1I	CCWWGG	1 cut(s)	1297
Bst2BI	CACGAG	1 cut(s)	1267
Bst2UI	CCWGG	3 cut(s)	203, 571, 602
Bst4CI	ACNGT	6 cut(s)	293, 337, 359, 510, 1495, 1725
Bst6I	CTCTTC	1 cut(s)	1225
BstACI	GRCGYC	2 cut(s)	985, 1502
BstAPI	GCANNNNNTGC	1 cut(s)	1445
BstAUI	TGTACA	1 cut(s)	1252
BstC8I	GCNNGC	4 cut(s)	153, 1446, 1676, 1933
BstDEI	CTNAG	6 cut(s)	216, 1089, 1211, 1366, 2006, 2106
BstEII	GGTNACC	1 cut(s)	1621
BstF5I	GGATG	3 cut(s)	868, 1108, 1267
BstH2I	RGCGCY	1 cut(s)	1147
BstHHI	GCGC	3 cut(s)	525, 1146, 1691
BstKTI	GATC	7 cut(s)	64, 391, 952, 1168, 1420, 1540, 1836
BstMAI	GTCTC	3 cut(s)	799, 1223, 2027
BstMBI	GATC	7 cut(s)	61, 388, 949, 1165, 1417, 1537, 1833
BstMWI	GCNNNNNNNGC	2 cut(s)	1445, 1610
BstNI	CCWGG	3 cut(s)	203, 571, 602
BstNSI	RCATGY	2 cut(s)	812, 1976
BstPI	GGTNACC	1 cut(s)	1621
BstSCI	CCNGG	5 cut(s)	201, 569, 600, 900, 957
BstSFI	CTRYAG	2 cut(s)	843, 1911
BstSLI	GKGCMC	2 cut(s)	324, 498
BstV1I	GCAGC	5 cut(s)	556, 1279, 1363, 1600, 1642
BstX2I	RGATCY	3 cut(s)	949, 1165, 1417
BstXI	CCANNNNNNTGG	2 cut(s)	471, 1725
BstYI	RGATCY	3 cut(s)	949, 1165, 1417
BsuI	GTATCC	1 cut(s)	1995
BsuRI	GGCC	3 cut(s)	599, 681, 906
BtsCI	GGATG	3 cut(s)	868, 1108, 1267
BtsI	GCAGTG	2 cut(s)	162, 712
BtsIMutI	CAGTG	3 cut(s)	162, 712, 1181
BveI	ACCTGC	3 cut(s)	319, 1310, 1360
Cac8I	GCNNGC	4 cut(s)	153, 1446, 1676, 1933
CaiI	CAGNNNCTG	2 cut(s)	737, 1325
CciI	TCATGA	2 cut(s)	1668, 1954
CfoI	GCGC	3 cut(s)	525, 1146, 1691
Cfr13I	GGNCC	4 cut(s)	564, 598, 700, 904
CseI	GACGC	1 cut(s)	993
Csp6I	GTAC	4 cut(s)	458, 644, 1253, 1721
CviQI	GTAC	4 cut(s)	458, 644, 1253, 1721
DdeI	CTNAG	6 cut(s)	216, 1089, 1211, 1366, 2006, 2106
DpnI	GATC	7 cut(s)	63, 390, 951, 1167, 1419, 1539, 1835
DpnII	GATC	7 cut(s)	61, 388, 949, 1165, 1417, 1537, 1833
DraIII	CACNNNGTG	2 cut(s)	169, 433
Eam1104I	CTCTTC	1 cut(s)	1225
EarI	CTCTTC	1 cut(s)	1225
EciI	GGCGGA	1 cut(s)	2085
Eco130I	CCWWGG	1 cut(s)	1297
Eco47I	GGWCC	2 cut(s)	564, 700
Eco57I	CTGAAG	4 cut(s)	759, 1037, 1224, 1443
Eco88I	CYCGRG	1 cut(s)	1533
Eco91I	GGTNACC	1 cut(s)	1621
EcoO109I	RGGNCCY	2 cut(s)	564, 598
EcoO65I	GGTNACC	1 cut(s)	1621
EcoRII	CCWGG	3 cut(s)	201, 569, 600
EcoT14I	CCWWGG	1 cut(s)	1297
EcoT22I	ATGCAT	2 cut(s)	6, 1441
ErhI	CCWWGG	1 cut(s)	1297
FaqI	GGGAC	5 cut(s)	189, 302, 996, 1319, 2144
FauI	CCCGC	1 cut(s)	2103
FauNDI	CATATG	2 cut(s)	514, 1899
FblI	GTMKAC	1 cut(s)	1075
Fnu4HI	GCNGC	5 cut(s)	545, 1293, 1377, 1614, 1656
FokI	GGATG	3 cut(s)	875, 1115, 1274
Fsp4HI	GCNGC	5 cut(s)	545, 1293, 1377, 1614, 1656
FspAI	RTGCGCAY	1 cut(s)	524
FspBI	CTAG	6 cut(s)	581, 672, 1079, 1133, 1380, 2045
FspI	TGCGCA	2 cut(s)	524, 1690
GlaI	GCGC	3 cut(s)	524, 1145, 1690
GluI	GCNGC	5 cut(s)	545, 1293, 1377, 1614, 1656
GsuI	CTGGAG	2 cut(s)	217, 1209
HaeII	RGCGCY	1 cut(s)	1147
HaeIII	GGCC	3 cut(s)	599, 681, 906
HapII	CCGG	4 cut(s)	72, 272, 901, 958
HgaI	GACGC	1 cut(s)	993
HhaI	GCGC	3 cut(s)	525, 1146, 1691
Hin1I	GRCGYC	2 cut(s)	985, 1502
Hin6I	GCGC	3 cut(s)	523, 1144, 1689
HinP1I	GCGC	3 cut(s)	523, 1144, 1689
HincII	GTYRAC	2 cut(s)	246, 1076
HindII	GTYRAC	2 cut(s)	246, 1076
HinfI	GANTC	8 cut(s)	77, 185, 436, 1093, 1115, 1958, 2035, 2141
HpaII	CCGG	4 cut(s)	72, 272, 901, 958
HphI	GGTGA	3 cut(s)	445, 1615, 2136
Hpy166II	GTNNAC	8 cut(s)	246, 322, 700, 1054, 1076, 1123, 1363, 1728
Hpy188I	TCNGA	6 cut(s)	82, 949, 1204, 1579, 1708, 2059
Hpy8I	GTNNAC	8 cut(s)	246, 322, 700, 1054, 1076, 1123, 1363, 1728
HpyCH4III	ACNGT	6 cut(s)	293, 337, 359, 510, 1495, 1725
HpyCH4IV	ACGT	4 cut(s)	1009, 1502, 1564, 2133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1445, 1610
HpyF3I	CTNAG	6 cut(s)	216, 1089, 1211, 1366, 2006, 2106
HpySE526I	ACGT	4 cut(s)	1009, 1502, 1564, 2133
Hsp92I	GRCGYC	2 cut(s)	985, 1502
HspAI	GCGC	3 cut(s)	523, 1144, 1689
KpnI	GGTACC	1 cut(s)	461
Kzo9I	GATC	7 cut(s)	61, 388, 949, 1165, 1417, 1537, 1833
LguI	GCTCTTC	1 cut(s)	1225
LmnI	GCTCC	3 cut(s)	198, 533, 1316
Lsp1109I	GCAGC	5 cut(s)	556, 1279, 1363, 1600, 1642
LweI	GCATC	8 cut(s)	13, 73, 337, 1396, 1426, 1573, 1712, 1789
MaeI	CTAG	6 cut(s)	581, 672, 1079, 1133, 1380, 2045
MaeII	ACGT	4 cut(s)	1009, 1502, 1564, 2133
MaeIII	GTNAC	6 cut(s)	121, 775, 821, 1516, 1621, 2142
MalI	GATC	7 cut(s)	63, 390, 951, 1167, 1419, 1539, 1835
MbiI	CCGCTC	1 cut(s)	2110
MboI	GATC	7 cut(s)	61, 388, 949, 1165, 1417, 1537, 1833
MboII	GAAGA	7 cut(s)	378, 752, 799, 878, 1030, 1175, 1212
MfeI	CAATTG	1 cut(s)	469
MflI	RGATCY	3 cut(s)	949, 1165, 1417
MhlI	GDGCHC	3 cut(s)	324, 498, 1534
MluCI	AATT	9 cut(s)	127, 239, 469, 1058, 1698, 1769, 1803, 1870, 2084
MlyI	GAGTC	3 cut(s)	1952, 2029, 2150
MmeI	TCCRAC	1 cut(s)	2037
Mph1103I	ATGCAT	2 cut(s)	6, 1441
MroXI	GAANNNNTTC	2 cut(s)	1219, 1428
MslI	CAYNNNNRTG	4 cut(s)	1101, 1174, 1260, 1977
MspI	CCGG	4 cut(s)	72, 272, 901, 958
MspR9I	CCNGG	5 cut(s)	203, 571, 602, 902, 959
MunI	CAATTG	1 cut(s)	469
Mva1269I	GAATGC	1 cut(s)	525
MvaI	CCWGG	3 cut(s)	203, 571, 602
MwoI	GCNNNNNNNGC	2 cut(s)	1445, 1610
NciI	CCSGG	2 cut(s)	902, 959
NdeI	CATATG	2 cut(s)	514, 1899
NdeII	GATC	7 cut(s)	61, 388, 949, 1165, 1417, 1537, 1833
NlaIV	GGNNCC	6 cut(s)	200, 459, 566, 905, 1419, 1570
NmuCI	GTSAC	6 cut(s)	121, 775, 821, 1516, 1621, 2142
NsbI	TGCGCA	2 cut(s)	524, 1690
NsiI	ATGCAT	2 cut(s)	6, 1441
NspI	RCATGY	2 cut(s)	812, 1976
PagI	TCATGA	2 cut(s)	1668, 1954
PaqCI	CACCTGC	1 cut(s)	1310
PasI	CCCWGGG	1 cut(s)	570
PciSI	GCTCTTC	1 cut(s)	1225
PctI	GAATGC	1 cut(s)	525
PdmI	GAANNNNTTC	2 cut(s)	1219, 1428
PfeI	GAWTC	5 cut(s)	77, 185, 436, 1093, 1115
PkrI	GCNGC	5 cut(s)	546, 1294, 1378, 1615, 1657
PleI	GAGTC	3 cut(s)	1952, 2029, 2149
PpsI	GAGTC	3 cut(s)	1952, 2029, 2149
PpuMI	RGGWCCY	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	564
Psp6I	CCWGG	3 cut(s)	201, 569, 600
PspEI	GGTNACC	1 cut(s)	1621
PspGI	CCWGG	3 cut(s)	201, 569, 600
PspN4I	GGNNCC	6 cut(s)	200, 459, 566, 905, 1419, 1570
PspPI	GGNCC	4 cut(s)	564, 598, 700, 904
PspPPI	RGGWCCY	1 cut(s)	564
PstI	CTGCAG	1 cut(s)	1915
PstNI	CAGNNNCTG	2 cut(s)	737, 1325
PsuI	RGATCY	3 cut(s)	949, 1165, 1417
RsaI	GTAC	4 cut(s)	459, 645, 1254, 1722
RsaNI	GTAC	4 cut(s)	458, 644, 1253, 1721
RseI	CAYNNNNRTG	4 cut(s)	1101, 1174, 1260, 1977
SalI	GTCGAC	1 cut(s)	1074
SapI	GCTCTTC	1 cut(s)	1225
SatI	GCNGC	5 cut(s)	545, 1293, 1377, 1614, 1656
Sau3AI	GATC	7 cut(s)	61, 388, 949, 1165, 1417, 1537, 1833
Sau96I	GGNCC	4 cut(s)	564, 598, 700, 904
SchI	GAGTC	3 cut(s)	1952, 2029, 2150
ScrFI	CCNGG	5 cut(s)	203, 571, 602, 902, 959
SduI	GDGCHC	3 cut(s)	324, 498, 1534
SfaNI	GCATC	8 cut(s)	13, 73, 337, 1396, 1426, 1573, 1712, 1789
SfcI	CTRYAG	2 cut(s)	843, 1911
SinI	GGWCC	2 cut(s)	564, 700
SmiMI	CAYNNNNRTG	4 cut(s)	1101, 1174, 1260, 1977
SmlI	CTYRAG	2 cut(s)	410, 1067
SmoI	CTYRAG	2 cut(s)	410, 1067
Sse9I	AATT	9 cut(s)	127, 239, 469, 1058, 1698, 1769, 1803, 1870, 2084
SsiI	CCGC	3 cut(s)	703, 2096, 2110
SspMI	CTAG	6 cut(s)	581, 672, 1079, 1133, 1380, 2045
StyD4I	CCNGG	5 cut(s)	201, 569, 600, 900, 957
StyI	CCWWGG	1 cut(s)	1297
TaaI	ACNGT	6 cut(s)	293, 337, 359, 510, 1495, 1725
TaiI	ACGT	4 cut(s)	1012, 1505, 1567, 2136
TaqI	TCGA	4 cut(s)	1075, 1660, 1887, 2022
TasI	AATT	9 cut(s)	127, 239, 469, 1058, 1698, 1769, 1803, 1870, 2084
TatI	WGTACW	1 cut(s)	1252
TfiI	GAWTC	5 cut(s)	77, 185, 436, 1093, 1115
TscAI	CASTG	3 cut(s)	162, 712, 1181
TseFI	GTSAC	6 cut(s)	121, 775, 821, 1516, 1621, 2142
TseI	GCWGC	5 cut(s)	544, 1292, 1376, 1613, 1655
Tsp45I	GTSAC	6 cut(s)	121, 775, 821, 1516, 1621, 2142
TspDTI	ATGAA	9 cut(s)	107, 149, 518, 759, 872, 879, 1868, 1943, 2009
TspRI	CASTG	3 cut(s)	162, 712, 1181
VneI	GTGCAC	1 cut(s)	320
VpaK11BI	GGWCC	2 cut(s)	564, 700
XapI	RAATTY	4 cut(s)	127, 1769, 1803, 1870
XceI	RCATGY	2 cut(s)	812, 1976
XmiI	GTMKAC	1 cut(s)	1075
XmnI	GAANNNNTTC	2 cut(s)	1219, 1428
XspI	CTAG	6 cut(s)	581, 672, 1079, 1133, 1380, 2045
ZraI	GACGTC	1 cut(s)	1503
Zsp2I	ATGCAT	2 cut(s)	6, 1441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.