Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003739

Physical Location & Seq

Genomic Coordinates Reverse (-)

63997774 .. 63999666

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0509000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAACTCTTCCTCTTCCCATCTTCTCTCTCCTTCTCTTCCCTAATTTTCAATCCCTTTTCTCACTGTAACCCTAAATCCATGGCCTCCTTCAAACCCTCAATCCCCCTGACCAGCGAATCCGCCCCTTCCAGCCGCCCCCCCTCCGGCGAGGTCCACGTCATCATGGGTCCCATGTTCGCCGGCAAGACCACCGCTCTCCTCCGCCGGATCAAGTCCGAGGGCGCCAACGGCAGGAATGTGGCGATGATTAAATCGAGCAAGGATAACAGATACGCCGTCGATTCGGTGGTGACTCATGATGGGGCTAAATTTCCATGCTGGGCGCTGCCGGATCTGTCCTCGTTTAGGCACAAATTTGGAGGTGATGCTTATGATAAGCTTGATGTTATTGGTATCGATGAGGCTCAATTTTTCGAAGATCTATATGATTTCTGCTGCATGGCTGCTGATCATGATGGGAAAACTGTGATTGTTGCAGGCTTGGATGGTGATTACTTGAGGAAAAGCTTTGGCTCGGTGCTTGATGTAGTGCCTCTTGCTGATACAGTGACCAAATTGACAGCTCGATGTGAAATGTGTGGCAAACGAGCTTTCTTTACCCTGAGGAAGACGGAGGAGACGAAGACTGAACTGATTGGCGGGGCTGATGTCTACATGCCTGTTTGTCGTCAACACTATGTCAATGGACAAGTTCTCATCAAATCTGCAAGAAGTGTTGTGGAGTCTCATAAATTTAAGAGTGGCACCATTTCAGAAGCAGCTCCAGTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

258

Amino Acids

28.21

Weight (kDa)

8.41

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TK	PF00265	50 - 227	1.8e-53	Thymidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15700 AT5G15700
fragaria_vesca	FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120
malus_domestica	MD09G1076800.v1.1 MD15G1148800.v1.1 MD17G1067300.v1.1
prunus_persica	Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1
pyrus_communis	pycom09g00400 pycom17g06760
rosa_chinensis	RchiOBHm_Chr2g0164571
rosa_laevigata	RLG00000021466
rosa_multiflora	Rmu_co8270321.1_g000001 Rmu_sc0020353.1_g000005 Rmu_ssc0000076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086480
rosa_rugosa	Rorug02G0509000 Rorug02G0509100 Rorug02G0509100 Rorug02G0509200.1
rosa_samantha	Rh2AG576800 Rh2BG587900 Rh2CG558700 Rh2DG598500
rosa_wichuraiana	Rw2G047890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	224, 746
AccBSI	CCGCTC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	654
AciI	CCGC	5 cut(s)	123, 136, 195, 205, 642
AclWI	GGATC	2 cut(s)	218, 342
AcsI	RAATTY	3 cut(s)	311, 356, 734
AcyI	GRCGYC	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	146, 234, 348
AgsI	TTSAA	2 cut(s)	52, 94
AjiI	CACGTC	1 cut(s)	160
AluBI	AGCT	5 cut(s)	382, 510, 566, 593, 764
AluI	AGCT	5 cut(s)	382, 510, 566, 593, 764
Alw26I	GTCTC	2 cut(s)	614, 732
AlwI	GGATC	2 cut(s)	218, 342
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	4 cut(s)	328, 438, 446, 761
ApoI	RAATTY	3 cut(s)	311, 356, 734
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	227, 328
AspS9I	GGNCC	2 cut(s)	154, 170
AsuHPI	GGTGA	3 cut(s)	304, 377, 503
AsuII	TTCGAA	1 cut(s)	417
AvaII	GGWCC	2 cut(s)	154, 170
AxyI	CCTNAGG	1 cut(s)	605
BanI	GGYRCC	2 cut(s)	224, 746
BbsI	GAAGAC	2 cut(s)	617, 632
BbvI	GCAGC	4 cut(s)	315, 425, 433, 773
BccI	CCATC	4 cut(s)	28, 296, 452, 482
BceAI	ACGGC	2 cut(s)	247, 263
BclI	TGATCA	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	614, 732
BfoI	RGCGCY	2 cut(s)	228, 329
BglII	AGATCT	1 cut(s)	421
BisI	GCNGC	5 cut(s)	136, 329, 439, 447, 762
BlsI	GCNGC	5 cut(s)	137, 330, 440, 448, 763
Bme18I	GGWCC	2 cut(s)	154, 170
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	154, 170
BmiI	GGNNCC	4 cut(s)	171, 172, 226, 748
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	2 cut(s)	617, 632
BpmI	CTGGAG	1 cut(s)	750
Bpu14I	TTCGAA	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	520
Bsa29I	ATCGAT	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	81, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 234, 348
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	767
Bse21I	CCTNAGG	1 cut(s)	605
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	81, 219
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	3 cut(s)	146, 234, 348
BseMII	CTCAG	1 cut(s)	596
BseNI	ACTGG	1 cut(s)	767
BseRI	GAGGAG	2 cut(s)	191, 632
BseXI	GCAGC	4 cut(s)	315, 425, 433, 773
BseYI	CCCAGC	1 cut(s)	321
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	2 cut(s)	224, 746
BshVI	ATCGAT	1 cut(s)	399
BsiSI	CCGG	4 cut(s)	147, 183, 208, 332
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	3 cut(s)	146, 234, 348
BsmAI	GTCTC	2 cut(s)	614, 732
BsmBI	CGTCTC	1 cut(s)	614
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	210, 334, 421, 451
Bsp19I	CCATGG	1 cut(s)	81
BspACI	CCGC	5 cut(s)	123, 136, 195, 205, 642
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	597
BspDI	ATCGAT	1 cut(s)	399
BspHI	TCATGA	2 cut(s)	298, 454
BspLI	GGNNCC	4 cut(s)	171, 172, 226, 748
BspPI	GGATC	2 cut(s)	218, 342
BspT104I	TTCGAA	1 cut(s)	417
BspT107I	GGYRCC	2 cut(s)	224, 746
BsrBI	CCGCTC	1 cut(s)	197
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	767
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	81, 219
BssMI	GATC	4 cut(s)	210, 334, 421, 451
BssNI	GRCGYC	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	81
Bst4CI	ACNGT	3 cut(s)	68, 469, 550
Bst6I	CTCTTC	3 cut(s)	14, 20, 43
BstACI	GRCGYC	1 cut(s)	225
BstBI	TTCGAA	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	184, 481
BstDEI	CTNAG	1 cut(s)	605
BstDSI	CCRYGG	1 cut(s)	81
BstENI	CCTNNNNNAGG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	493
BstH2I	RGCGCY	2 cut(s)	228, 329
BstHHI	GCGC	2 cut(s)	227, 328
BstKTI	GATC	4 cut(s)	213, 337, 424, 454
BstMAI	GTCTC	2 cut(s)	614, 732
BstMBI	GATC	4 cut(s)	210, 334, 421, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	661
BstV1I	GCAGC	4 cut(s)	315, 425, 433, 773
BstV2I	GAAGAC	2 cut(s)	617, 632
BstX2I	RGATCY	2 cut(s)	334, 421
BstYI	RGATCY	2 cut(s)	334, 421
Bsu15I	ATCGAT	1 cut(s)	399
Bsu36I	CCTNAGG	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	399
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	260
BtrI	CACGTC	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	2 cut(s)	64, 555
Cac8I	GCNNGC	2 cut(s)	184, 481
CciI	TCATGA	2 cut(s)	298, 454
CfoI	GCGC	2 cut(s)	227, 328
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	154, 170
ClaI	ATCGAT	1 cut(s)	399
CviAII	CATG	8 cut(s)	82, 166, 175, 299, 318, 442, 455, 658
DdeI	CTNAG	1 cut(s)	605
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	4 cut(s)	212, 336, 423, 453
DpnII	GATC	4 cut(s)	210, 334, 421, 451
Eam1104I	CTCTTC	3 cut(s)	14, 20, 43
EarI	CTCTTC	3 cut(s)	14, 20, 43
EciI	GGCGGA	2 cut(s)	112, 194
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	154, 170
Eco81I	CCTNAGG	1 cut(s)	605
EcoNI	CCTNNNNNAGG	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	614
FaeI	CATG	8 cut(s)	85, 169, 178, 302, 321, 445, 458, 661
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	8 cut(s)	81, 165, 174, 298, 317, 441, 454, 657
FauI	CCCGC	1 cut(s)	635
FbaI	TGATCA	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	5 cut(s)	136, 329, 439, 447, 762
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	5 cut(s)	136, 329, 439, 447, 762
GlaI	GCGC	2 cut(s)	226, 327
GluI	GCNGC	5 cut(s)	136, 329, 439, 447, 762
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	1 cut(s)	750
HaeII	RGCGCY	2 cut(s)	228, 329
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	4 cut(s)	147, 183, 208, 332
HhaI	GCGC	2 cut(s)	227, 328
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	8 cut(s)	85, 169, 178, 302, 321, 445, 458, 661
Hin6I	GCGC	2 cut(s)	225, 326
HinP1I	GCGC	2 cut(s)	225, 326
HincII	GTYRAC	1 cut(s)	674
HindII	GTYRAC	1 cut(s)	674
HindIII	AAGCTT	2 cut(s)	380, 508
HinfI	GANTC	4 cut(s)	119, 284, 295, 725
HpaII	CCGG	4 cut(s)	147, 183, 208, 332
HphI	GGTGA	3 cut(s)	304, 377, 503
Hpy166II	GTNNAC	3 cut(s)	157, 655, 674
Hpy188I	TCNGA	2 cut(s)	220, 757
Hpy188III	TCNNGA	2 cut(s)	299, 455
Hpy8I	GTNNAC	3 cut(s)	157, 655, 674
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	3 cut(s)	43, 100, 138
HpyCH4III	ACNGT	3 cut(s)	68, 469, 550
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	441, 479, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	605
HpySE526I	ACGT	1 cut(s)	159
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	8 cut(s)	85, 169, 178, 302, 321, 445, 458, 661
HspAI	GCGC	2 cut(s)	225, 326
KasI	GGCGCC	1 cut(s)	224
KflI	GGGWCCC	1 cut(s)	170
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	210, 334, 421, 451
LmnI	GCTCC	1 cut(s)	769
Lsp1109I	GCAGC	4 cut(s)	315, 425, 433, 773
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	68, 292, 550
MalI	GATC	4 cut(s)	212, 336, 423, 453
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	4 cut(s)	210, 334, 421, 451
MboII	GAAGA	6 cut(s)	7, 15, 30, 431, 622, 637
MflI	RGATCY	2 cut(s)	334, 421
MluCI	AATT	6 cut(s)	45, 311, 356, 410, 557, 734
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	289, 734
MroNI	GCCGGC	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	252, 738
MspI	CCGG	4 cut(s)	147, 183, 208, 332
MwoI	GCNNNNNNNGC	1 cut(s)	231
NaeI	GCCGGC	1 cut(s)	184
NarI	GGCGCC	1 cut(s)	225
NcoI	CCATGG	1 cut(s)	81
NdeII	GATC	4 cut(s)	210, 334, 421, 451
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	8 cut(s)	85, 169, 178, 302, 321, 445, 458, 661
NlaIV	GGNNCC	4 cut(s)	171, 172, 226, 748
NmuCI	GTSAC	2 cut(s)	292, 550
NspI	RCATGY	1 cut(s)	661
NspV	TTCGAA	1 cut(s)	417
PagI	TCATGA	2 cut(s)	298, 454
PcsI	WCGNNNNNNNCGW	1 cut(s)	620
PdiI	GCCGGC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	119, 284
PkrI	GCNGC	5 cut(s)	137, 330, 440, 448, 763
PleI	GAGTC	2 cut(s)	289, 733
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	2 cut(s)	289, 733
PpuMI	RGGWCCY	1 cut(s)	170
Psp5II	RGGWCCY	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	321
PspN4I	GGNNCC	4 cut(s)	171, 172, 226, 748
PspPI	GGNCC	2 cut(s)	154, 170
PspPPI	RGGWCCY	1 cut(s)	170
PsuI	RGATCY	2 cut(s)	334, 421
SaqAI	TTAA	2 cut(s)	252, 738
SatI	GCNGC	5 cut(s)	136, 329, 439, 447, 762
Sau3AI	GATC	4 cut(s)	210, 334, 421, 451
Sau96I	GGNCC	2 cut(s)	154, 170
SchI	GAGTC	2 cut(s)	289, 734
SetI	ASST	8 cut(s)	156, 162, 367, 384, 512, 568, 595, 766
SfaNI	GCATC	1 cut(s)	358
SfoI	GGCGCC	1 cut(s)	226
SfuI	TTCGAA	1 cut(s)	417
SinI	GGWCC	2 cut(s)	154, 170
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	6 cut(s)	45, 311, 356, 410, 557, 734
SsiI	CCGC	5 cut(s)	123, 136, 195, 205, 642
SspDI	GGCGCC	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	3 cut(s)	68, 469, 550
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	5 cut(s)	257, 282, 399, 417, 568
TasI	AATT	6 cut(s)	45, 311, 356, 410, 557, 734
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	119, 284
Tru1I	TTAA	2 cut(s)	252, 738
Tru9I	TTAA	2 cut(s)	252, 738
TscAI	CASTG	2 cut(s)	71, 555
TseFI	GTSAC	2 cut(s)	292, 550
TseI	GCWGC	4 cut(s)	328, 438, 446, 761
Tsp45I	GTSAC	2 cut(s)	292, 550
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	2 cut(s)	71, 555
VpaK11BI	GGWCC	2 cut(s)	154, 170
XagI	CCTNNNNNAGG	1 cut(s)	346
XapI	RAATTY	3 cut(s)	311, 356, 734
XceI	RCATGY	1 cut(s)	661
XmiI	GTMKAC	1 cut(s)	654
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.