Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003739

Physical Location & Seq

Genomic Coordinates Reverse (-)

23810012 .. 23818860

Gene Structure 8849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G247300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3075 bp

ATGTCCAGAAGCCAAACCCCACTGTCCCCTGCAAATATCAGCAAGAATTTTACATTTCATAGCCCCTTAATTTTCCACAAAAACCCATCAATGATATCAACAACTGTGTGGAGAAATTTTGCTAAGCAAGCCATTTCTAGGAAGCAGAGGTTTCACATCAATTCGCAGTCTTTTTCACGAGCTTATAGCCTTCTGGGTATTTGCCAGGAATCGGTTTTCCCGGGAAATTTCAAGCCTTTTGAGCTGAGTTCTTGCTCAAGCTTGAGGTTTTCTGAGGTGGGTTTTCGCGGGAAAGGTGCTATTTCTTCACCTGAGGATTGTATGTGTAAGCCCAGTTTCTGGTCTGTGAGGAATCCAATTTGGTTTAATGGGTTTTGTCCCAAAGGGTATGCGAGCGTAGCTGAGGCTGTATCTTCCACTGATGTTGAGGAAGAAGTGTCTGTTGTTGATGAAGTTCAAGAATTATTGCAACAAATGAGTATAGAGGAGAAGAGGGAGGCCCAATATAAGCAGCGGACTAGGCAGAATAGAGCGAGAGGAATGGGGCAAGGGAAGTACCACATGCTTAAGAGAAGACAGATAAAGATTGAAACTGAAGCATGGGAACGGGCGGCCAAGGAGTACAGGGAGCTTATGATGGACATGTGTGAGCAGAAGTTAGCACCCAATTTGCCATACATGAAGTCTTTGTTTCTTGGTTGGTTTGAGCCTTTGCGCAATGCCATTGACAAAGAGCAGGACCTGTGTCGGAAAGGAAAGAATAAGACAGCTTACGCACCGTATATTGATCAGTTACCAGCTGATATGATGTCAGTTATTACAATGCATAAGTTGATGGGATTGCTGATGACTGGAGGCGAACATGGAACTTGCAGGGTGGTAGCGGCTGCTTGCACGATAGGTGAAGCCATTGAGCAGGAGGTTAGAATACACAAGTTCTTGGAAATGACGAGAAAGAAAAAGGTTGACAAAGATCAGGAAAATGGGGAGTCTGATGCTGCAAAGAAGGAACGAGAGAAGTTGAATAAAAAAGTCACTAATTTGATGAAAAAACAAAAACTGAAAGCAGTGAGAGGGATAGTGAGCAAACATGATGCTTCAAAATCATGGAGCCTGGAAGCCAGGGCTAAGGTCGGCAGTCGTTTGATTGAATTGTTGACTCAAACAGCTTTTATACAGCCTCCAGCTGACCAGTTAGCAGATGGTCCACCGGATATACGACCTGCATTTGTACACACATTTAGGACTGTTGCGAAAGATGCAAAGAATGCCAGCAGAAGATATGGGGTTATTGAATGTGACCCTCTTGTTCTCAAAGGCCTTGAGAAAACAGCAAGGCACATGGTGATTCCTTATATGCCGATGTTGGTACCACCATTGAACTGGACTGGTTATGACAAAGGAGGGTACTTTTTCCTACCATCCTATGTCATGCGCATTCATGGAGCGAGACAGCAGCGTGAAGCAATTAAGAGGACCCCAAGGGAGCAACTGGAACCAGTTTTTAAGGCCCTGGACGCTCTTGGGAATACCAGATGGAGAGTTAATAAGAGGGTACTTAGTGTTGTAGATAGAATATGGGCTAGCGGAGGCCATCTCGCTGATTTGGTGGACCGTAATGATGTTCCTTTACCAGAGGAACCAGATACTGAAGATGAAACACTGCTTAAGAAATGGAAATGGAAGGTGAAGTCTGTGAAGAAAGAGAACATGGAGAGGCATTCACAGCGTTGTGACACAGAACTTAAACTAGCTGTAGCACGGAAAATGAAGGATGAAGAAGGTTTTTACTATCCGCACAATCTTGACTTTCGGGGCCGTGCATATCCTATGCACCCATACTTGAATCATCTCGGTTCAGATGTATGCCGGGGTATTTTGGAGTTTCAAGAGGGACGCCCCCTTGGAAAGTCAGGCTTAAGTTGGTTGAAGATACACTTGGCAAATCTATATGCTGGTGGTGTGGACAAATTATCTCTTGAGGGTCGAATAGCATTTACTGAGAATCACTTGGATGATATATTTGATTCTGTGGACAAACCACTAGAAGGAAGGCGCTGGTGGTTGAAGGCAGAAGATCCATTTCAATGCTTGGCTGTGTGCATTAACCTTGCTGAAGCTTTGAGAAGCTCTTCTCCAGAGACTTTTATTTCACATATTCCTGTACATCAGGATGGCTCGTGCAATGGTCTACAACACTATGCTGCCCTTGGAAGAGACAAGTTGGGAGCAGCTTCTGTGAATCTGGTTACAGGAGAGAAGCCTGCAGATGTTTACTCAGGAATAGCTGTTAGGGTACTGGAAATCATGAGAAGAGATGCACAGAAGGATCCTGTAGTTTTTCCAGAGGCGTTGCGTGCAAAATTATTAATTAATCAGGTGGATAGGAAATTGGTGAAGCAGACTGTGATGACATCAGTATATGGTGTCACTTACATTGGTGCTCGGGATCAAATCAAGAGGAGGTTGAAGGAACGTGGTTCCATTTCAGATGATGCAGAGATCTTTGGTTGTGCTTGTTATGCTGCAAAGATCACCTTAACTGCTTTAGGAGAGATGTTTGAAGCTGCACGAGGTATCATGAGCTGGCTTGGCGAATGTGCAAAAATAATTGCATCTGAAAACCAACCGGTACGGTGGACAACTCCGCTTGGACTTCCAGTTGTGCAACCTTACCGTAAATTCGGAAGGCATCTTATTAAAACTTCCCTTCAAGTTTTGACGTTACAGCGAGAAACAGAAAAGGTCATGGTCAAGAGGCAGAGGACGGCTTTCCCACCAAATTTTGTTCATTCTCTAGACAGTTCTCATATGATGATGACTGCGATTGCCTGTAAAAAGGCAGGCTTAAGCTTTGCAGGAGTTCATGACTCATATTGGACACATGCGTGTGACGTGGATGAAATGAACAAGATACTTCGTGAAAAGTTTGTCCAGCTGTATGAGACTCCAATACTAGAGAATTTATTGGAGAGCTTTCAGCAGTCCTTTCCCGCATTAACGTTCCCCCCCTTGCCTGAACGGGGTGACTTTGACTTAAGGGATGTCTTAGAGTCGCCGTATTTCTTTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

1025

Amino Acids

116.56

Weight (kDa)

9.2

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003739)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15700 AT5G15700
fragaria_vesca	FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120 FvH4_6g46120
malus_domestica	MD09G1076800.v1.1 MD15G1148800.v1.1 MD17G1067300.v1.1
prunus_persica	Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1 Prupe.3G247300_v2.0.a1
pyrus_communis	pycom09g00400 pycom17g06760
rosa_chinensis	RchiOBHm_Chr2g0164571
rosa_laevigata	RLG00000021466
rosa_multiflora	Rmu_co8270321.1_g000001 Rmu_sc0020353.1_g000005 Rmu_ssc0000076.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086480
rosa_rugosa	Rorug02G0509000 Rorug02G0509100 Rorug02G0509100 Rorug02G0509200.1
rosa_samantha	Rh2AG576800 Rh2BG587900 Rh2CG558700 Rh2DG598500
rosa_wichuraiana	Rw2G047890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	716, 1436
Acc36I	ACCTGC	1 cut(s)	1231
Acc65I	GGTACC	1 cut(s)	1369
AccB1I	GGYRCC	1 cut(s)	1369
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	2191
AccII	CGCG	1 cut(s)	288
AciI	CCGC	8 cut(s)	288, 514, 611, 884, 1587, 1796, 2648, 2994
AclI	AACGTT	1 cut(s)	3002
AclWI	GGATC	4 cut(s)	2072, 2324, 2337, 2457
AcoI	YGGCCR	1 cut(s)	612
AcsI	RAATTY	6 cut(s)	46, 115, 226, 2681, 2782, 2962
AcuI	CTGAAG	3 cut(s)	615, 1671, 2136
AcyI	GRCGYC	1 cut(s)	1897
AdeI	CACNNNGTG	1 cut(s)	1345
AfaI	GTAC	9 cut(s)	557, 623, 1233, 1371, 1409, 1557, 2166, 2298, 2634
AfiI	CCNNNNNNNGG	5 cut(s)	138, 211, 339, 2048, 3023
AflII	CTTAAG	5 cut(s)	566, 1667, 1918, 2848, 3037
AflIII	ACRYGT	1 cut(s)	642
AgeI	ACCGGT	1 cut(s)	2629
AjiI	CACGTC	1 cut(s)	2896
AjnI	CCWGG	4 cut(s)	204, 1113, 1121, 1512
AjuI	GAANNNNNNNTTGG	2 cut(s)	1922, 1954
AleI	CACNNNNGTG	1 cut(s)	2887
Alw21I	GWGCWC	1 cut(s)	2446
Alw26I	GTCTC	4 cut(s)	1444, 2135, 2211, 2939
AlwI	GGATC	4 cut(s)	2072, 2324, 2337, 2457
AlwNI	CAGNNNCTG	4 cut(s)	339, 742, 1649, 2237
Ama87I	CYCGRG	2 cut(s)	220, 2445
AoxI	GGCC	6 cut(s)	498, 612, 1318, 1509, 1591, 1816
ApeKI	GCWGC	8 cut(s)	511, 887, 998, 1456, 2204, 2231, 2525, 2567
ApoI	RAATTY	6 cut(s)	46, 115, 226, 2681, 2782, 2962
AseI	ATTAAT	2 cut(s)	2369, 2373
AsiGI	ACCGGT	1 cut(s)	2629
Asp700I	GAANNNNTTC	1 cut(s)	2131
Asp718I	GGTACC	1 cut(s)	1369
AspLEI	GCGC	3 cut(s)	717, 1437, 2058
AspS9I	GGNCC	7 cut(s)	499, 739, 1205, 1476, 1510, 1612, 1816
AsuC2I	CCSGG	3 cut(s)	221, 222, 1871
AsuHPI	GGTGA	7 cut(s)	300, 914, 1357, 1699, 2407, 2527, 3038
AsuNHI	GCTAGC	1 cut(s)	1583
AvaI	CYCGRG	2 cut(s)	220, 2445
AvaII	GGWCC	4 cut(s)	739, 1205, 1476, 1612
AxyI	CCTNAGG	1 cut(s)	312
BamHI	GGATCC	1 cut(s)	2329
BanI	GGYRCC	1 cut(s)	1369
BauI	CACGAG	3 cut(s)	177, 2179, 2571
BbsI	GAAGAC	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	2446
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	8 cut(s)	523, 874, 985, 1468, 2191, 2243, 2512, 2554
BccI	CCATC	8 cut(s)	94, 631, 829, 1196, 1429, 1530, 1602, 2168
BceAI	ACGGC	3 cut(s)	1803, 2784, 3043
BciT130I	CCWGG	4 cut(s)	206, 1115, 1123, 1514
BclI	TGATCA	1 cut(s)	787
BcnI	CCSGG	3 cut(s)	221, 222, 1871
BcoDI	GTCTC	4 cut(s)	1444, 2135, 2211, 2939
BfaI	CTAG	7 cut(s)	138, 519, 1584, 1751, 2045, 2798, 2957
BfmI	CTRYAG	3 cut(s)	1755, 2265, 2334
BfoI	RGCGCY	1 cut(s)	2059
BfrI	CTTAAG	5 cut(s)	566, 1667, 1918, 2848, 3037
BfuAI	ACCTGC	1 cut(s)	1231
BglII	AGATCT	1 cut(s)	2502
BlpI	GCTNAGC	1 cut(s)	123
Bme1390I	CCNGG	7 cut(s)	206, 221, 222, 1115, 1123, 1514, 1871
Bme18I	GGWCC	4 cut(s)	739, 1205, 1476, 1612
BmeT110I	CYCGRG	2 cut(s)	220, 2445
BmgBI	CACGTC	1 cut(s)	2896
BmgT120I	GGNCC	7 cut(s)	499, 739, 1205, 1476, 1510, 1612, 1816
BmiI	GGNNCC	8 cut(s)	1112, 1371, 1478, 1497, 1641, 1817, 2331, 2482
BmrFI	CCNGG	7 cut(s)	206, 221, 222, 1115, 1123, 1514, 1871
BmrI	ACTGGG	1 cut(s)	327
BmsI	GCATC	7 cut(s)	985, 1084, 1249, 2308, 2485, 2624, 2701
BmtI	GCTAGC	1 cut(s)	1587
BmuI	ACTGGG	1 cut(s)	327
BoxI	GACNNNNGTC	1 cut(s)	744
BpiI	GAAGAC	1 cut(s)	580
BplI	GAGNNNNNCTC	2 cut(s)	1581, 1613
BpmI	CTGGAG	3 cut(s)	873, 1167, 2121
Bpu10I	CCTNAGC	2 cut(s)	402, 1128
Bpu1102I	GCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	4 cut(s)	241, 283, 1343, 2000
BpuMI	CCSGG	3 cut(s)	221, 222, 1871
BsaHI	GRCGYC	1 cut(s)	1897
BsaJI	CCNNGG	8 cut(s)	220, 615, 1122, 1481, 1512, 1870, 1903, 2209
BsaWI	WCCGGW	2 cut(s)	1210, 2629
Bsc4I	CCNNNNNNNGG	5 cut(s)	138, 211, 339, 2048, 3023
Bse118I	RCCGGY	1 cut(s)	2629
Bse1I	ACTGG	9 cut(s)	333, 856, 1192, 1388, 1393, 1497, 1499, 2304, 2660
Bse21I	CCTNAGG	1 cut(s)	312
Bse3DI	GCAATG	2 cut(s)	724, 2191
BseBI	CCWGG	4 cut(s)	206, 1115, 1123, 1514
BseDI	CCNNGG	8 cut(s)	220, 615, 1122, 1481, 1512, 1870, 1903, 2209
BseGI	GGATG	6 cut(s)	1421, 1780, 2020, 2179, 2905, 3049
BseLI	CCNNNNNNNGG	5 cut(s)	138, 211, 339, 2048, 3023
BseMI	GCAATG	2 cut(s)	724, 2191
BseMII	CTCAG	6 cut(s)	236, 264, 303, 393, 1992, 2292
BseNI	ACTGG	9 cut(s)	333, 856, 1192, 1388, 1393, 1497, 1499, 2304, 2660
BseRI	GAGGAG	2 cut(s)	500, 2476
BseXI	GCAGC	8 cut(s)	523, 874, 985, 1468, 2191, 2243, 2512, 2554
BsgI	GTGCAG	1 cut(s)	2553
Bsh1236I	CGCG	1 cut(s)	288
BshFI	GGCC	6 cut(s)	500, 614, 1320, 1511, 1593, 1818
BshNI	GGYRCC	1 cut(s)	1369
BshTI	ACCGGT	1 cut(s)	2629
BsiHKAI	GWGCWC	1 cut(s)	2446
BsiHKCI	CYCGRG	2 cut(s)	220, 2445
BsiSI	CCGG	4 cut(s)	221, 1211, 1870, 2630
BslFI	GGGAC	3 cut(s)	10, 363, 1908
BslI	CCNNNNNNNGG	5 cut(s)	138, 211, 339, 2048, 3023
BsmAI	GTCTC	4 cut(s)	1444, 2135, 2211, 2939
BsmFI	GGGAC	3 cut(s)	10, 363, 1908
BsmI	GAATGC	3 cut(s)	1273, 1437, 1720
BsnI	GGCC	6 cut(s)	500, 614, 1320, 1511, 1593, 1818
BsoBI	CYCGRG	2 cut(s)	220, 2445
Bsp1286I	GDGCHC	1 cut(s)	2446
Bsp1407I	TGTACA	2 cut(s)	1231, 2164
Bsp143I	GATC	7 cut(s)	787, 973, 2077, 2329, 2449, 2502, 2532
Bsp1720I	GCTNAGC	1 cut(s)	123
BspACI	CCGC	8 cut(s)	288, 514, 611, 884, 1587, 1796, 2648, 2994
BspANI	GGCC	6 cut(s)	500, 614, 1320, 1511, 1593, 1818
BspCNI	CTCAG	6 cut(s)	237, 265, 304, 394, 1993, 2291
BspFNI	CGCG	1 cut(s)	288
BspHI	TCATGA	3 cut(s)	2307, 2580, 2866
BspLI	GGNNCC	8 cut(s)	1112, 1371, 1478, 1497, 1641, 1817, 2331, 2482
BspMAI	CTGCAG	1 cut(s)	2269
BspMI	ACCTGC	1 cut(s)	1231
BspOI	GCTAGC	1 cut(s)	1587
BspPI	GGATC	4 cut(s)	2072, 2324, 2337, 2457
BspQI	GCTCTTC	1 cut(s)	2137
BspT107I	GGYRCC	1 cut(s)	1369
BspTI	CTTAAG	5 cut(s)	566, 1667, 1918, 2848, 3037
BsrDI	GCAATG	2 cut(s)	724, 2191
BsrFI	RCCGGY	1 cut(s)	2629
BsrGI	TGTACA	2 cut(s)	1231, 2164
BsrI	ACTGG	9 cut(s)	333, 856, 1192, 1388, 1393, 1497, 1499, 2304, 2660
BssAI	RCCGGY	1 cut(s)	2629
BssECI	CCNNGG	8 cut(s)	220, 615, 1122, 1481, 1512, 1870, 1903, 2209
BssMI	GATC	7 cut(s)	787, 973, 2077, 2329, 2449, 2502, 2532
BssNI	GRCGYC	1 cut(s)	1897
BssSI	CACGAG	3 cut(s)	177, 2179, 2571
BssT1I	CCWWGG	4 cut(s)	615, 1481, 1903, 2209
Bst2BI	CACGAG	3 cut(s)	177, 2179, 2571
Bst2UI	CCWGG	4 cut(s)	206, 1115, 1123, 1514
Bst4CI	ACNGT	9 cut(s)	24, 106, 780, 1249, 1616, 2407, 2637, 2678, 2804
Bst6I	CTCTTC	4 cut(s)	485, 2137, 2209, 2308
BstACI	GRCGYC	1 cut(s)	1897
BstAFI	CTTAAG	5 cut(s)	566, 1667, 1918, 2848, 3037
BstAPI	GCANNNNNTGC	1 cut(s)	1268
BstAUI	TGTACA	2 cut(s)	1231, 2164
BstC8I	GCNNGC	9 cut(s)	129, 394, 892, 1273, 1585, 2265, 2358, 2588, 2845
BstF5I	GGATG	6 cut(s)	1421, 1780, 2020, 2179, 2905, 3049
BstFNI	CGCG	1 cut(s)	288
BstH2I	RGCGCY	1 cut(s)	2059
BstHHI	GCGC	3 cut(s)	717, 1437, 2058
BstKTI	GATC	7 cut(s)	790, 976, 2080, 2332, 2452, 2505, 2535
BstMAI	GTCTC	4 cut(s)	1444, 2135, 2211, 2939
BstMBI	GATC	7 cut(s)	787, 973, 2077, 2329, 2449, 2502, 2532
BstNI	CCWGG	4 cut(s)	206, 1115, 1123, 1514
BstNSI	RCATGY	3 cut(s)	565, 646, 2888
BstPAI	GACNNNNGTC	1 cut(s)	744
BstSCI	CCNGG	7 cut(s)	204, 219, 220, 1113, 1121, 1512, 1869
BstSFI	CTRYAG	3 cut(s)	1755, 2265, 2334
BstUI	CGCG	1 cut(s)	288
BstV1I	GCAGC	8 cut(s)	523, 874, 985, 1468, 2191, 2243, 2512, 2554
BstV2I	GAAGAC	1 cut(s)	580
BstX2I	RGATCY	3 cut(s)	2077, 2329, 2502
BstXI	CCANNNNNNTGG	1 cut(s)	1383
BstYI	RGATCY	3 cut(s)	2077, 2329, 2502
Bsu36I	CCTNAGG	1 cut(s)	312
BsuRI	GGCC	6 cut(s)	500, 614, 1320, 1511, 1593, 1818
BtrI	CACGTC	1 cut(s)	2896
BtsCI	GGATG	6 cut(s)	1421, 1780, 2020, 2179, 2905, 3049
BtsI	GCAGTG	2 cut(s)	1074, 1661
BtsIMutI	CAGTG	4 cut(s)	20, 417, 1074, 1661
BveI	ACCTGC	1 cut(s)	1231
Cac8I	GCNNGC	9 cut(s)	129, 394, 892, 1273, 1585, 2265, 2358, 2588, 2845
CaiI	CAGNNNCTG	4 cut(s)	339, 742, 1649, 2237
CciI	TCATGA	3 cut(s)	2307, 2580, 2866
CfoI	GCGC	3 cut(s)	717, 1437, 2058
Cfr10I	RCCGGY	1 cut(s)	2629
Cfr13I	GGNCC	7 cut(s)	499, 739, 1205, 1476, 1510, 1612, 1816
Cfr9I	CCCGGG	1 cut(s)	220
CseI	GACGC	2 cut(s)	1526, 1905
Csp6I	GTAC	9 cut(s)	556, 622, 1232, 1370, 1408, 1556, 2165, 2297, 2633
CspAI	ACCGGT	1 cut(s)	2629
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviQI	GTAC	9 cut(s)	556, 622, 1232, 1370, 1408, 1556, 2165, 2297, 2633
DpnI	GATC	7 cut(s)	789, 975, 2079, 2331, 2451, 2504, 2534
DpnII	GATC	7 cut(s)	787, 973, 2077, 2329, 2449, 2502, 2532
DraIII	CACNNNGTG	1 cut(s)	1345
EaeI	YGGCCR	1 cut(s)	612
Eam1104I	CTCTTC	4 cut(s)	485, 2137, 2209, 2308
EarI	CTCTTC	4 cut(s)	485, 2137, 2209, 2308
Eco130I	CCWWGG	4 cut(s)	615, 1481, 1903, 2209
Eco147I	AGGCCT	1 cut(s)	1320
Eco32I	GATATC	1 cut(s)	96
Eco47I	GGWCC	4 cut(s)	739, 1205, 1476, 1612
Eco57I	CTGAAG	3 cut(s)	615, 1671, 2136
Eco81I	CCTNAGG	1 cut(s)	312
Eco88I	CYCGRG	2 cut(s)	220, 2445
EcoO109I	RGGNCCY	3 cut(s)	739, 1476, 1510
EcoRII	CCWGG	4 cut(s)	204, 1113, 1121, 1512
EcoRV	GATATC	1 cut(s)	96
EcoT14I	CCWWGG	4 cut(s)	615, 1481, 1903, 2209
EcoT22I	ATGCAT	1 cut(s)	828
ErhI	CCWWGG	4 cut(s)	615, 1481, 1903, 2209
FalI	AAGNNNNNCTT	8 cut(s)	1901, 1933, 1922, 1954, 2522, 2554, 2831, 2863
FaqI	GGGAC	3 cut(s)	10, 363, 1908
FauI	CCCGC	2 cut(s)	281, 3001
FauNDI	CATATG	1 cut(s)	2811
FbaI	TGATCA	1 cut(s)	787
FblI	GTMKAC	1 cut(s)	2191
FokI	GGATG	6 cut(s)	1408, 1787, 2027, 2186, 2912, 3056
FspAI	RTGCGCAY	1 cut(s)	1436
FspBI	CTAG	7 cut(s)	138, 519, 1584, 1751, 2045, 2798, 2957
FspI	TGCGCA	2 cut(s)	716, 1436
GlaI	GCGC	3 cut(s)	716, 1436, 2057
GsuI	CTGGAG	3 cut(s)	873, 1167, 2121
HaeII	RGCGCY	1 cut(s)	2059
HaeIII	GGCC	6 cut(s)	500, 614, 1320, 1511, 1593, 1818
HapII	CCGG	4 cut(s)	221, 1211, 1870, 2630
HgaI	GACGC	2 cut(s)	1526, 1905
HhaI	GCGC	3 cut(s)	717, 1437, 2058
Hin1I	GRCGYC	1 cut(s)	1897
Hin6I	GCGC	3 cut(s)	715, 1435, 2056
HinP1I	GCGC	3 cut(s)	715, 1435, 2056
HincII	GTYRAC	2 cut(s)	967, 1158
HindII	GTYRAC	2 cut(s)	967, 1158
HindIII	AAGCTT	3 cut(s)	259, 2118, 2851
HpaII	CCGG	4 cut(s)	221, 1211, 1870, 2630
HphI	GGTGA	7 cut(s)	300, 914, 1357, 1699, 2407, 2527, 3038
Hpy188I	TCNGA	7 cut(s)	274, 750, 994, 1861, 2491, 2620, 2687
HpyCH4III	ACNGT	9 cut(s)	24, 106, 780, 1249, 1616, 2407, 2637, 2678, 2804
HpyCH4IV	ACGT	4 cut(s)	2476, 2723, 2895, 3002
HpySE526I	ACGT	4 cut(s)	2476, 2723, 2895, 3002
Hsp92I	GRCGYC	1 cut(s)	1897
HspAI	GCGC	3 cut(s)	715, 1435, 2056
KpnI	GGTACC	1 cut(s)	1373
Ksp22I	TGATCA	1 cut(s)	787
Kzo9I	GATC	7 cut(s)	787, 973, 2077, 2329, 2449, 2502, 2532
LguI	GCTCTTC	1 cut(s)	2137
LmnI	GCTCC	5 cut(s)	628, 1110, 1445, 1486, 2228
Lsp1109I	GCAGC	8 cut(s)	523, 874, 985, 1468, 2191, 2243, 2512, 2554
LweI	GCATC	7 cut(s)	985, 1084, 1249, 2308, 2485, 2624, 2701
MaeI	CTAG	7 cut(s)	138, 519, 1584, 1751, 2045, 2798, 2957
MaeII	ACGT	4 cut(s)	2476, 2723, 2895, 3002
MaeIII	GTNAC	9 cut(s)	792, 1033, 1298, 1733, 2248, 2428, 2724, 2891, 3026
MalI	GATC	7 cut(s)	789, 975, 2079, 2331, 2451, 2504, 2534
MboI	GATC	7 cut(s)	787, 973, 2077, 2329, 2449, 2502, 2532
MflI	RGATCY	3 cut(s)	2077, 2329, 2502
MhlI	GDGCHC	1 cut(s)	2446
MlyI	GAGTC	5 cut(s)	998, 1153, 2864, 2941, 3062
MmeI	TCCRAC	1 cut(s)	728
Mph1103I	ATGCAT	1 cut(s)	828
MroXI	GAANNNNTTC	1 cut(s)	2131
MslI	CAYNNNNRTG	5 cut(s)	2013, 2086, 2172, 2887, 2889
MspA1I	CMGCKG	4 cut(s)	514, 800, 1187, 2938
MspCI	CTTAAG	5 cut(s)	566, 1667, 1918, 2848, 3037
MspI	CCGG	4 cut(s)	221, 1211, 1870, 2630
MspR9I	CCNGG	7 cut(s)	206, 221, 222, 1115, 1123, 1514, 1871
Mva1269I	GAATGC	3 cut(s)	1273, 1437, 1720
MvaI	CCWGG	4 cut(s)	206, 1115, 1123, 1514
MvnI	CGCG	1 cut(s)	288
NciI	CCSGG	3 cut(s)	221, 222, 1871
NdeI	CATATG	1 cut(s)	2811
NdeII	GATC	7 cut(s)	787, 973, 2077, 2329, 2449, 2502, 2532
NheI	GCTAGC	1 cut(s)	1583
NlaIV	GGNNCC	8 cut(s)	1112, 1371, 1478, 1497, 1641, 1817, 2331, 2482
NmuCI	GTSAC	6 cut(s)	1033, 1298, 1733, 2428, 2891, 3026
NsbI	TGCGCA	2 cut(s)	716, 1436
NsiI	ATGCAT	1 cut(s)	828
NspI	RCATGY	3 cut(s)	565, 646, 2888
OliI	CACNNNNGTG	1 cut(s)	2887
PacI	TTAATTAA	1 cut(s)	2373
PagI	TCATGA	3 cut(s)	2307, 2580, 2866
PceI	AGGCCT	1 cut(s)	1320
PciI	ACATGT	1 cut(s)	642
PciSI	GCTCTTC	1 cut(s)	2137
PctI	GAATGC	3 cut(s)	1273, 1437, 1720
PdmI	GAANNNNTTC	1 cut(s)	2131
PfeI	GAWTC	7 cut(s)	209, 352, 1348, 1846, 2005, 2027, 2242
PflMI	CCANNNNNTGG	1 cut(s)	339
PinAI	ACCGGT	1 cut(s)	2629
PleI	GAGTC	5 cut(s)	997, 1153, 2864, 2941, 3061
PpsI	GAGTC	5 cut(s)	997, 1153, 2864, 2941, 3061
PpuMI	RGGWCCY	2 cut(s)	739, 1476
PscI	ACATGT	1 cut(s)	642
PshAI	GACNNNNGTC	1 cut(s)	744
PshBI	ATTAAT	2 cut(s)	2369, 2373
Psp1406I	AACGTT	1 cut(s)	3002
Psp5II	RGGWCCY	2 cut(s)	739, 1476
Psp6I	CCWGG	4 cut(s)	204, 1113, 1121, 1512
PspGI	CCWGG	4 cut(s)	204, 1113, 1121, 1512
PspN4I	GGNNCC	8 cut(s)	1112, 1371, 1478, 1497, 1641, 1817, 2331, 2482
PspPI	GGNCC	7 cut(s)	499, 739, 1205, 1476, 1510, 1612, 1816
PspPPI	RGGWCCY	2 cut(s)	739, 1476
PstI	CTGCAG	1 cut(s)	2269
PstNI	CAGNNNCTG	4 cut(s)	339, 742, 1649, 2237
PsuI	RGATCY	3 cut(s)	2077, 2329, 2502
PvuII	CAGCTG	3 cut(s)	800, 1187, 2938
RsaI	GTAC	9 cut(s)	557, 623, 1233, 1371, 1409, 1557, 2166, 2298, 2634
RsaNI	GTAC	9 cut(s)	556, 622, 1232, 1370, 1408, 1556, 2165, 2297, 2633
RseI	CAYNNNNRTG	5 cut(s)	2013, 2086, 2172, 2887, 2889
SapI	GCTCTTC	1 cut(s)	2137
Sau3AI	GATC	7 cut(s)	787, 973, 2077, 2329, 2449, 2502, 2532
Sau96I	GGNCC	7 cut(s)	499, 739, 1205, 1476, 1510, 1612, 1816
SchI	GAGTC	5 cut(s)	998, 1153, 2864, 2941, 3062
ScrFI	CCNGG	7 cut(s)	206, 221, 222, 1115, 1123, 1514, 1871
SduI	GDGCHC	1 cut(s)	2446
SfaNI	GCATC	7 cut(s)	985, 1084, 1249, 2308, 2485, 2624, 2701
SfcI	CTRYAG	3 cut(s)	1755, 2265, 2334
SinI	GGWCC	4 cut(s)	739, 1205, 1476, 1612
SmaI	CCCGGG	1 cut(s)	222
SmiMI	CAYNNNNRTG	5 cut(s)	2013, 2086, 2172, 2887, 2889
SmlI	CTYRAG	9 cut(s)	256, 262, 566, 1322, 1667, 1918, 1979, 2848, 3037
SmoI	CTYRAG	9 cut(s)	256, 262, 566, 1322, 1667, 1918, 1979, 2848, 3037
SseBI	AGGCCT	1 cut(s)	1320
SsiI	CCGC	8 cut(s)	288, 514, 611, 884, 1587, 1796, 2648, 2994
SspMI	CTAG	7 cut(s)	138, 519, 1584, 1751, 2045, 2798, 2957
StuI	AGGCCT	1 cut(s)	1320
StyD4I	CCNGG	7 cut(s)	204, 219, 220, 1113, 1121, 1512, 1869
StyI	CCWWGG	4 cut(s)	615, 1481, 1903, 2209
TaaI	ACNGT	9 cut(s)	24, 106, 780, 1249, 1616, 2407, 2637, 2678, 2804
TaiI	ACGT	4 cut(s)	2479, 2726, 2898, 3005
TaqI	TCGA	1 cut(s)	1987
TatI	WGTACW	3 cut(s)	621, 1231, 2164
TauI	GCSGC	2 cut(s)	614, 887
TfiI	GAWTC	7 cut(s)	209, 352, 1348, 1846, 2005, 2027, 2242
TscAI	CASTG	4 cut(s)	27, 424, 1074, 1668
TseFI	GTSAC	6 cut(s)	1033, 1298, 1733, 2428, 2891, 3026
TseI	GCWGC	8 cut(s)	511, 887, 998, 1456, 2204, 2231, 2525, 2567
Tsp45I	GTSAC	6 cut(s)	1033, 1298, 1733, 2428, 2891, 3026
TspGWI	ACGGA	1 cut(s)	1777
TspMI	CCCGGG	1 cut(s)	220
TspRI	CASTG	4 cut(s)	27, 424, 1074, 1668
Van91I	CCANNNNNTGG	1 cut(s)	339
Vha464I	CTTAAG	5 cut(s)	566, 1667, 1918, 2848, 3037
VpaK11BI	GGWCC	4 cut(s)	739, 1205, 1476, 1612
VspI	ATTAAT	2 cut(s)	2369, 2373
XapI	RAATTY	6 cut(s)	46, 115, 226, 2681, 2782, 2962
XbaI	TCTAGA	1 cut(s)	2797
XceI	RCATGY	3 cut(s)	565, 646, 2888
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1199, 1380
XmaI	CCCGGG	1 cut(s)	220
XmiI	GTMKAC	1 cut(s)	2191
XmnI	GAANNNNTTC	1 cut(s)	2131
XspI	CTAG	7 cut(s)	138, 519, 1584, 1751, 2045, 2798, 2957
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.