MD15G1273100.v1.1

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0006338
Physical Location & Seq
Reverse (-)
23826808 .. 23830375
3568 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1273100.v1.1.491

Sequence Viewer

Length: 2025 bp
ATGGCTGCAGCAACGGCGGCGGCGGCAGCTGAGAAATCAAGCTCCAAGGGCCAAGCATGGTTCTGCACCACTGGATTGCCAAGCGACATTGTCGTCCAAGTCAACGACATGACCTTCCATCTCCATAAGTTCCCTCTCATGTCGAAAAGTCGAAAGCTTCATAACCTAATCACAGAGCAAGAGACGAACCCATCAAACCCCCATCACCAAATGGACGACGACGATGACGACGAAATCGAAGAAGTCCAGTGCCAAATATCCCTCTCTGACTTCCCCGACGGCTCCGAGACCTTCGAGATCGCCGCCAAGTTCTGCTACGGCGTCAAGATCGATCTGAGCTCCTCCAATGTCGTGCCGTTGCGCTGCGCCGGGGAGTACTTGGATATGACGGAGGAGTACTCGGAGAACAACCTCATTTCCAAGACCGAGAGGTTTCTCTCTCAGTCGGTGTTGAAAAGCTTCAAGGAGTCGCTCAGAGCTCTCAAGTCCTGCGAGCGAGTCATGCCTCTGGCGGAGAATTTGGGGATTACGCAGAGGTGCATAGACTCCGTCGCCTCCCGTGCCACGTCTGCCGATCCCTCCCTGTTTGGCTGGCCGGTTAGCGACGGTGGACCCATTCGGAATGCAAATGCGGATGCGGTTTCGGCTTCTTCTGCTTCAAAACAGCAGATTTTGTGGAATGGTATCGACGCCGGCGGCGGACGGAGAAGGAGTAAACGCGCGGATTCCTGGCTTGAAGACTTGGTGGTTTTGAGCTTGCCACTCTTCAAGCGGTTAATTTCCGCCATGAAATCTGGAGATCTGAGCTTGGAGATAGTAGAGACGTGCTTGATGCATTACGCTAAGAAGTACATTCCTGGAATTTCGAGAACGAATAGAAAGCCTTCGTCTTCTACCTCCGCCGCCGCCGCCACTACTGCCGCCGAATCATCGCGTTTAGCTTCGGAGAGTCAGCAGAGAGAGCTTTTGGAGACGATCATCTCCAATCTTCCATTGGAGAAGAGCTCCAGACCTTCGACGGCGACTCGATTCCTCTTCGGACTTTTGCGAACCGCCAACATACTTAACGCCTCCGAAGCCTGCAAGGCCGCCTTGGAGAAGAAGATTGCCTCGCAGTTCCACCAAGCCACCTTAGACGACCTCCTCATCCCGAGCTACTCCTACCTGAACGAGACGCTCTACGACGTCGATTGCATCGAGAGAATCCTCGGTTACTTCTTGAACGGCTTGGATCAGGGAAACACCGCCAGCATCGAAGACGGTTCTGACGGCGCCGTCCGATCGCCGTCGTTGATGCTCGTCGGGAAATTGATAGATGAGTTCCTTTCCGAGATCGCCTCCGATGCGAATCTTAAACCGGATCGGTTCTACAACCTCGCGATTTCTCTGCCTGATCAAACTCGGCTCTTCGACGACGGCCTTTACAGAGCCGTCGATGTCTATCTCAAGGCGCATCCATGGCTATCGGAACCTGAGCGCGAGAAGGTCTGCGGAATTCTAGACTGCCAGAAGCTGACGCTGGAGGCGTGCACGCATGCAGCGCAGAACGAGCGATTGCCGCTGCGAGCGGTGGTGCAGGTTCTGTTTTTCGAGCAGCTCCAGCTCCGCCACGCCATCGCCGGAACTCTTCTCGCCGCCGACGGCGTTCCCCCGGAATCGTCCAGGCCTTCTGTGCTGCGACGCGAAAGGGATGACGAGGAGGAGGAAGAGGGCGACGCGGCGGAGGCACGCGGGGATGAAAGTGGAGGCACGTGGCTGGCGGCGGTGAGACAGAATCAGGTGTTGCGATTGGACATGGATAGCATGAGGACGCGGGTGCACCAATTGGAGCGGGAATGCTCCAGCATGAAGAAAGTGATCGAGAAAATTGATAAGCCGGGCCAACCCGGAAGAGACGAGTTGGGTCGGAAAGACTCGTTGATCCGGAGGTTCGGGTGCAAGTTCAAGACCCAGGTGTGCGATTCGCACAAACCGACGGTCGTTGATACGAGAAAGGGACGACGGCGACACCATCACCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

675

Amino Acids

74.73

Weight (kDa)

5.67

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 242 - 510 2.7e-88 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 92, 1274
AatII GACGTC 1 cut(s) 1188
Acc36I ACCTGC 1 cut(s) 1567
AccB1I GGYRCC 1 cut(s) 1271
AccBSI CCGCTC 2 cut(s) 1568, 1831
AccII CGCG 9 cut(s) 720, 722, 934, 1379, 1479, 1683, 1718, 1731, 1813
AccIII TCCGGA 1 cut(s) 1923
AclWI GGATC 4 cut(s) 569, 1239, 1368, 1915
AcoI YGGCCR 1 cut(s) 593
AcsI RAATTY 3 cut(s) 517, 861, 1494
AcvI CACGTG 1 cut(s) 1752
AcyI GRCGYC 4 cut(s) 321, 690, 1185, 1272
AfaI GTAC 3 cut(s) 377, 398, 851
AgsI TTSAA 7 cut(s) 454, 463, 660, 737, 769, 1222, 1945
AjiI CACGTC 2 cut(s) 567, 825
AjnI CCWGG 4 cut(s) 728, 856, 1661, 1950
Alw21I GWGCWC 5 cut(s) 341, 481, 1007, 1532, 1821
Alw26I GTCTC 7 cut(s) 176, 281, 815, 965, 1166, 1762, 1887
Alw44I GTGCAC 2 cut(s) 1528, 1817
AlwI GGATC 4 cut(s) 569, 1239, 1368, 1915
AlwNI CAGNNNCTG 2 cut(s) 1513, 1582
Ama87I CYCGRG 1 cut(s) 1150
Aor13HI TCCGGA 1 cut(s) 1923
AoxI GGCC 6 cut(s) 49, 593, 1086, 1417, 1664, 1879
ApaLI GTGCAC 2 cut(s) 1528, 1817
ApeKI GCWGC 8 cut(s) 5, 8, 26, 363, 1538, 1561, 1594, 1675
ApoI RAATTY 3 cut(s) 517, 861, 1494
ArsI GACNNNNNNTTYG 2 cut(s) 1962, 1994
Asp700I GAANNNNTTC 2 cut(s) 458, 883
AspLEI GCGC 7 cut(s) 363, 368, 722, 1274, 1453, 1479, 1543
AspS9I GGNCC 3 cut(s) 49, 611, 1879
AsuC2I CCSGG 4 cut(s) 370, 1652, 1878, 1887
AsuHPI GGTGA 3 cut(s) 197, 1777, 2006
AvaI CYCGRG 1 cut(s) 1150
AvaII GGWCC 1 cut(s) 611
BaeGI GKGCMC 2 cut(s) 1532, 1821
BanI GGYRCC 1 cut(s) 1271
BanII GRGCYC 3 cut(s) 341, 481, 1007
BbrPI CACGTG 1 cut(s) 1752
BbsI GAAGAC 3 cut(s) 744, 882, 1263
Bbv12I GWGCWC 5 cut(s) 341, 481, 1007, 1532, 1821
BbvI GCAGC 7 cut(s) 20, 38, 350, 1548, 1550, 1606, 1662
BccI CCATC 5 cut(s) 126, 199, 210, 1622, 2019
BcgI CGANNNNNNTGC 2 cut(s) 1369, 1403
BciT130I CCWGG 4 cut(s) 730, 858, 1663, 1952
BclI TGATCA 1 cut(s) 1393
BcnI CCSGG 4 cut(s) 370, 1652, 1878, 1887
BcoDI GTCTC 7 cut(s) 176, 281, 815, 965, 1166, 1762, 1887
BfaI CTAG 1 cut(s) 1499
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 1275
BfuAI ACCTGC 1 cut(s) 1567
BglI GCCNNNNNGGC 1 cut(s) 1085
BglII AGATCT 1 cut(s) 799
BmcAI AGTACT 2 cut(s) 377, 398
Bme1390I CCNGG 8 cut(s) 370, 730, 858, 1652, 1663, 1878, 1887, 1952
Bme18I GGWCC 1 cut(s) 611
BmeT110I CYCGRG 1 cut(s) 1150
BmgBI CACGTC 2 cut(s) 567, 825
BmgT120I GGNCC 3 cut(s) 49, 611, 1879
BmiI GGNNCC 4 cut(s) 283, 613, 1273, 1470
BmrFI CCNGG 8 cut(s) 370, 730, 858, 1652, 1663, 1878, 1887, 1952
BmsI GCATC 7 cut(s) 625, 822, 1203, 1260, 1284, 1333, 1462
BpiI GAAGAC 3 cut(s) 744, 882, 1263
BplI GAGNNNNNCTC 6 cut(s) 383, 415, 989, 1021, 1322, 1354
BpmI CTGGAG 5 cut(s) 816, 991, 1541, 1583, 1825
Bpu10I CCTNAGC 1 cut(s) 1473
BpuEI CTTGAG 2 cut(s) 467, 1430
BpuMI CCSGG 4 cut(s) 370, 1652, 1878, 1887
Bsa29I ATCGAT 1 cut(s) 330
BsaAI YACGTR 1 cut(s) 1752
BsaBI GATNNNNATC 2 cut(s) 1347, 1440
BsaHI GRCGYC 4 cut(s) 321, 690, 1185, 1272
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 7 cut(s) 45, 369, 1092, 1207, 1457, 1650, 1950
BsaWI WCCGGW 2 cut(s) 1357, 1923
BsaXI ACNNNNNCTCC 2 cut(s) 697, 727
Bse118I RCCGGY 2 cut(s) 595, 692
Bse1I ACTGG 2 cut(s) 76, 247
Bse8I GATNNNNATC 2 cut(s) 1347, 1440
BseAI TCCGGA 1 cut(s) 1923
BseBI CCWGG 4 cut(s) 730, 858, 1663, 1952
BseCI ATCGAT 1 cut(s) 330
BseDI CCNNGG 7 cut(s) 45, 369, 1092, 1207, 1457, 1650, 1950
BseGI GGATG 5 cut(s) 640, 1146, 1453, 1696, 1741
BseJI GATNNNNATC 2 cut(s) 1347, 1440
BseMII CTCAG 6 cut(s) 21, 326, 455, 487, 794, 1464
BseNI ACTGG 2 cut(s) 76, 247
BseRI GAGGAG 5 cut(s) 331, 407, 1133, 1712, 1715
BseSI GKGCMC 2 cut(s) 1532, 1821
BseXI GCAGC 7 cut(s) 20, 38, 350, 1548, 1550, 1606, 1662
BsgI GTGCAG 2 cut(s) 49, 1595
Bsh1236I CGCG 9 cut(s) 720, 722, 934, 1379, 1479, 1683, 1718, 1731, 1813
Bsh1285I CGRYCG 2 cut(s) 1283, 1980
BshFI GGCC 6 cut(s) 51, 595, 1088, 1419, 1666, 1881
BshNI GGYRCC 1 cut(s) 1271
BshVI ATCGAT 1 cut(s) 330
BsiEI CGRYCG 2 cut(s) 1283, 1980
BsiHKAI GWGCWC 5 cut(s) 341, 481, 1007, 1532, 1821
BsiHKCI CYCGRG 1 cut(s) 1150
BsiSI CCGG 9 cut(s) 369, 596, 693, 1358, 1620, 1652, 1877, 1887, 1924
BslFI GGGAC 1 cut(s) 2010
BsmAI GTCTC 7 cut(s) 176, 281, 815, 965, 1166, 1762, 1887
BsmBI CGTCTC 5 cut(s) 176, 815, 965, 1166, 1887
BsmFI GGGAC 1 cut(s) 2010
BsmI GAATGC 2 cut(s) 628, 1841
BsnI GGCC 6 cut(s) 51, 595, 1088, 1419, 1666, 1881
Bso31I GGTCTC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 1150
Bsp1286I GDGCHC 5 cut(s) 341, 481, 1007, 1532, 1821
Bsp13I TCCGGA 1 cut(s) 1923
Bsp19I CCATGG 1 cut(s) 1457
Bsp68I TCGCGA 1 cut(s) 1379
BspANI GGCC 6 cut(s) 51, 595, 1088, 1419, 1666, 1881
BspCNI CTCAG 6 cut(s) 22, 327, 454, 486, 795, 1465
BspDI ATCGAT 1 cut(s) 330
BspEI TCCGGA 1 cut(s) 1923
BspFNI CGCG 9 cut(s) 720, 722, 934, 1379, 1479, 1683, 1718, 1731, 1813
BspLI GGNNCC 4 cut(s) 283, 613, 1273, 1470
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 1567
BspPI GGATC 4 cut(s) 569, 1239, 1368, 1915
BspQI GCTCTTC 2 cut(s) 995, 1412
BspT107I GGYRCC 1 cut(s) 1271
BspTNI GGTCTC 1 cut(s) 281
BsrBI CCGCTC 2 cut(s) 1568, 1831
BsrFI RCCGGY 2 cut(s) 595, 692
BsrI ACTGG 2 cut(s) 76, 247
BssAI RCCGGY 2 cut(s) 595, 692
BssECI CCNNGG 7 cut(s) 45, 369, 1092, 1207, 1457, 1650, 1950
BssNI GRCGYC 4 cut(s) 321, 690, 1185, 1272
BssT1I CCWWGG 3 cut(s) 45, 1092, 1457
Bst2UI CCWGG 4 cut(s) 730, 858, 1663, 1952
Bst4CI ACNGT 4 cut(s) 608, 1262, 1978, 2022
Bst6I CTCTTC 7 cut(s) 770, 995, 1040, 1412, 1632, 1701, 1885
BstACI GRCGYC 4 cut(s) 321, 690, 1185, 1272
BstBAI YACGTR 1 cut(s) 1752
BstDEI CTNAG 8 cut(s) 30, 335, 441, 473, 803, 843, 1132, 1473
BstDSI CCRYGG 1 cut(s) 1457
BstF5I GGATG 5 cut(s) 640, 1146, 1453, 1696, 1741
BstFNI CGCG 9 cut(s) 720, 722, 934, 1379, 1479, 1683, 1718, 1731, 1813
BstH2I RGCGCY 1 cut(s) 1275
BstHHI GCGC 7 cut(s) 363, 368, 722, 1274, 1453, 1479, 1543
BstMAI GTCTC 7 cut(s) 176, 281, 815, 965, 1166, 1762, 1887
BstMCI CGRYCG 2 cut(s) 1283, 1980
BstNI CCWGG 4 cut(s) 730, 858, 1663, 1952
BstNSI RCATGY 1 cut(s) 1538
BstSCI CCNGG 8 cut(s) 368, 728, 856, 1650, 1661, 1876, 1885, 1950
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 2 cut(s) 1532, 1821
BstUI CGCG 9 cut(s) 720, 722, 934, 1379, 1479, 1683, 1718, 1731, 1813
BstV1I GCAGC 7 cut(s) 20, 38, 350, 1548, 1550, 1606, 1662
BstV2I GAAGAC 3 cut(s) 744, 882, 1263
BstX2I RGATCY 1 cut(s) 799
BstYI RGATCY 1 cut(s) 799
Bsu15I ATCGAT 1 cut(s) 330
BsuRI GGCC 6 cut(s) 51, 595, 1088, 1419, 1666, 1881
BsuTUI ATCGAT 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 1457
BtgZI GCGATG 2 cut(s) 915, 1600
BtrI CACGTC 2 cut(s) 567, 825
BtsCI GGATG 5 cut(s) 640, 1146, 1453, 1696, 1741
BtsIMutI CAGTG 2 cut(s) 69, 254
BtuMI TCGCGA 1 cut(s) 1379
BveI ACCTGC 1 cut(s) 1567
CaiI CAGNNNCTG 2 cut(s) 1513, 1582
CfoI GCGC 7 cut(s) 363, 368, 722, 1274, 1453, 1479, 1543
Cfr10I RCCGGY 2 cut(s) 595, 692
Cfr13I GGNCC 3 cut(s) 49, 611, 1879
ClaI ATCGAT 1 cut(s) 330
CseI GACGC 7 cut(s) 310, 698, 1183, 1525, 1689, 1724, 1819
Csp6I GTAC 3 cut(s) 376, 397, 850
CviQI GTAC 3 cut(s) 376, 397, 850
DdeI CTNAG 8 cut(s) 30, 335, 441, 473, 803, 843, 1132, 1473
DinI GGCGCC 1 cut(s) 1273
DrdI GACNNNNNNGTC 2 cut(s) 92, 1274
DseDI GACNNNNNNGTC 2 cut(s) 92, 1274
EaeI YGGCCR 1 cut(s) 593
Eam1104I CTCTTC 7 cut(s) 770, 995, 1040, 1412, 1632, 1701, 1885
EarI CTCTTC 7 cut(s) 770, 995, 1040, 1412, 1632, 1701, 1885
EciI GGCGGA 6 cut(s) 527, 714, 772, 889, 1595, 1736
Ecl136II GAGCTC 3 cut(s) 339, 479, 1005
Eco130I CCWWGG 3 cut(s) 45, 1092, 1457
Eco147I AGGCCT 1 cut(s) 1666
Eco24I GRGCYC 3 cut(s) 341, 481, 1007
Eco31I GGTCTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 611
Eco53kI GAGCTC 3 cut(s) 339, 479, 1005
Eco72I CACGTG 1 cut(s) 1752
Eco88I CYCGRG 1 cut(s) 1150
EcoICRI GAGCTC 3 cut(s) 339, 479, 1005
EcoRI GAATTC 1 cut(s) 1494
EcoRII CCWGG 4 cut(s) 728, 856, 1661, 1950
EcoT14I CCWWGG 3 cut(s) 45, 1092, 1457
EcoT22I ATGCAT 1 cut(s) 837
EcoT38I GRGCYC 3 cut(s) 341, 481, 1007
EgeI GGCGCC 1 cut(s) 1273
EheI GGCGCC 1 cut(s) 1273
ErhI CCWWGG 3 cut(s) 45, 1092, 1457
Esp3I CGTCTC 5 cut(s) 176, 815, 965, 1166, 1887
FalI AAGNNNNNCTT 2 cut(s) 1076, 1108
FaqI GGGAC 1 cut(s) 2010
FauI CCCGC 3 cut(s) 1724, 1806, 1824
FbaI TGATCA 1 cut(s) 1393
FokI GGATG 5 cut(s) 647, 1133, 1440, 1703, 1748
FriOI GRGCYC 3 cut(s) 341, 481, 1007
FspBI CTAG 1 cut(s) 1499
GlaI GCGC 7 cut(s) 362, 367, 721, 1273, 1452, 1478, 1542
GsuI CTGGAG 5 cut(s) 816, 991, 1541, 1583, 1825
HaeII RGCGCY 1 cut(s) 1275
HaeIII GGCC 6 cut(s) 51, 595, 1088, 1419, 1666, 1881
HapII CCGG 9 cut(s) 369, 596, 693, 1358, 1620, 1652, 1877, 1887, 1924
HgaI GACGC 7 cut(s) 310, 698, 1183, 1525, 1689, 1724, 1819
HhaI GCGC 7 cut(s) 363, 368, 722, 1274, 1453, 1479, 1543
Hin1I GRCGYC 4 cut(s) 321, 690, 1185, 1272
Hin6I GCGC 7 cut(s) 361, 366, 720, 1272, 1451, 1477, 1541
HinP1I GCGC 7 cut(s) 361, 366, 720, 1272, 1451, 1477, 1541
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 2 cut(s) 155, 457
HpaII CCGG 9 cut(s) 369, 596, 693, 1358, 1620, 1652, 1877, 1887, 1924
HphI GGTGA 3 cut(s) 197, 1777, 2006
Hpy166II GTNNAC 5 cut(s) 103, 611, 716, 1530, 1819
Hpy8I GTNNAC 5 cut(s) 103, 611, 716, 1530, 1819
HpyAV CCTTC 7 cut(s) 124, 301, 702, 894, 1023, 1477, 1677
HpyCH4III ACNGT 4 cut(s) 608, 1262, 1978, 2022
HpyCH4IV ACGT 4 cut(s) 566, 824, 1185, 1751
HpyF3I CTNAG 8 cut(s) 30, 335, 441, 473, 803, 843, 1132, 1473
HpySE526I ACGT 4 cut(s) 566, 824, 1185, 1751
Hsp92I GRCGYC 4 cut(s) 321, 690, 1185, 1272
HspAI GCGC 7 cut(s) 361, 366, 720, 1272, 1451, 1477, 1541
KasI GGCGCC 1 cut(s) 1271
Kpn2I TCCGGA 1 cut(s) 1923
KroI GCCGGC 1 cut(s) 692
KroNI GCCGGC 1 cut(s) 694
Ksp22I TGATCA 1 cut(s) 1393
LguI GCTCTTC 2 cut(s) 995, 1412
LmnI GCTCC 8 cut(s) 47, 287, 344, 1010, 1602, 1608, 1828, 1844
Lsp1109I GCAGC 7 cut(s) 20, 38, 350, 1548, 1550, 1606, 1662
LweI GCATC 7 cut(s) 625, 822, 1203, 1260, 1284, 1333, 1462
MaeI CTAG 1 cut(s) 1499
MaeII ACGT 4 cut(s) 566, 824, 1185, 1751
MaeIII GTNAC 1 cut(s) 1211
MbiI CCGCTC 2 cut(s) 1568, 1831
MfeI CAATTG 1 cut(s) 1823
MflI RGATCY 1 cut(s) 799
MhlI GDGCHC 5 cut(s) 341, 481, 1007, 1532, 1821
MluCI AATT 7 cut(s) 517, 777, 861, 1307, 1494, 1823, 1866
Mly113I GGCGCC 1 cut(s) 1272
MlyI GAGTC 6 cut(s) 476, 507, 539, 958, 1018, 1907
MmeI TCCRAC 1 cut(s) 1886
Mph1103I ATGCAT 1 cut(s) 837
MreI CGCCGGCG 1 cut(s) 692
MroI TCCGGA 1 cut(s) 1923
MroNI GCCGGC 1 cut(s) 692
MroXI GAANNNNTTC 2 cut(s) 458, 883
MseI TTAA 3 cut(s) 776, 1065, 1353
MspA1I CMGCKG 2 cut(s) 29, 1561
MspI CCGG 9 cut(s) 369, 596, 693, 1358, 1620, 1652, 1877, 1887, 1924
MspR9I CCNGG 8 cut(s) 370, 730, 858, 1652, 1663, 1878, 1887, 1952
MteI GCGCNGCGC 1 cut(s) 364
MunI CAATTG 1 cut(s) 1823
Mva1269I GAATGC 2 cut(s) 628, 1841
MvaI CCWGG 4 cut(s) 730, 858, 1663, 1952
MvnI CGCG 9 cut(s) 720, 722, 934, 1379, 1479, 1683, 1718, 1731, 1813
NaeI GCCGGC 1 cut(s) 694
NarI GGCGCC 1 cut(s) 1272
NciI CCSGG 4 cut(s) 370, 1652, 1878, 1887
NcoI CCATGG 1 cut(s) 1457
NgoMIV GCCGGC 1 cut(s) 692
NlaIV GGNNCC 4 cut(s) 283, 613, 1273, 1470
NmeAIII GCCGAG 1 cut(s) 1381
NruI TCGCGA 1 cut(s) 1379
NsiI ATGCAT 1 cut(s) 837
NspI RCATGY 1 cut(s) 1538
PaeI GCATGC 1 cut(s) 1538
PceI AGGCCT 1 cut(s) 1666
PciSI GCTCTTC 2 cut(s) 995, 1412
PcsI WCGNNNNNNNCGW 6 cut(s) 225, 228, 234, 1194, 1523, 1970
PctI GAATGC 2 cut(s) 628, 1841
PdiI GCCGGC 1 cut(s) 694
PdmI GAANNNNTTC 2 cut(s) 458, 883
PfeI GAWTC 8 cut(s) 725, 926, 1029, 1203, 1348, 1655, 1774, 1961
PflFI GACNNNGTC 2 cut(s) 89, 548
PfoI TCCNGGA 1 cut(s) 856
Ple19I CGATCG 1 cut(s) 1283
PleI GAGTC 6 cut(s) 475, 506, 539, 957, 1018, 1907
PluTI GGCGCC 1 cut(s) 1275
PmaCI CACGTG 1 cut(s) 1752
PmlI CACGTG 1 cut(s) 1752
PpsI GAGTC 6 cut(s) 475, 506, 539, 957, 1018, 1907
Ppu21I YACGTR 1 cut(s) 1752
Psp124BI GAGCTC 3 cut(s) 341, 481, 1007
Psp6I CCWGG 4 cut(s) 728, 856, 1661, 1950
PspCI CACGTG 1 cut(s) 1752
PspGI CCWGG 4 cut(s) 728, 856, 1661, 1950
PspN4I GGNNCC 4 cut(s) 283, 613, 1273, 1470
PspPI GGNCC 3 cut(s) 49, 611, 1879
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 2 cut(s) 1513, 1582
PsuI RGATCY 1 cut(s) 799
PsyI GACNNNGTC 2 cut(s) 89, 548
PvuI CGATCG 1 cut(s) 1283
PvuII CAGCTG 1 cut(s) 29
RruI TCGCGA 1 cut(s) 1379
RsaI GTAC 3 cut(s) 377, 398, 851
RsaNI GTAC 3 cut(s) 376, 397, 850
SacI GAGCTC 3 cut(s) 341, 481, 1007
SapI GCTCTTC 2 cut(s) 995, 1412
SaqAI TTAA 3 cut(s) 776, 1065, 1353
Sau96I GGNCC 3 cut(s) 49, 611, 1879
ScaI AGTACT 2 cut(s) 377, 398
SchI GAGTC 6 cut(s) 476, 507, 539, 958, 1018, 1907
ScrFI CCNGG 8 cut(s) 370, 730, 858, 1652, 1663, 1878, 1887, 1952
SduI GDGCHC 5 cut(s) 341, 481, 1007, 1532, 1821
SfaNI GCATC 7 cut(s) 625, 822, 1203, 1260, 1284, 1333, 1462
SfcI CTRYAG 1 cut(s) 6
SfoI GGCGCC 1 cut(s) 1273
SgrAI CRCCGGYG 1 cut(s) 692
SinI GGWCC 1 cut(s) 611
SmlI CTYRAG 2 cut(s) 482, 1445
SmoI CTYRAG 2 cut(s) 482, 1445
SphI GCATGC 1 cut(s) 1538
Sse9I AATT 7 cut(s) 517, 777, 861, 1307, 1494, 1823, 1866
SseBI AGGCCT 1 cut(s) 1666
SspDI GGCGCC 1 cut(s) 1271
SspMI CTAG 1 cut(s) 1499
SstI GAGCTC 3 cut(s) 341, 481, 1007
StuI AGGCCT 1 cut(s) 1666
StyD4I CCNGG 8 cut(s) 368, 728, 856, 1650, 1661, 1876, 1885, 1950
StyI CCWWGG 3 cut(s) 45, 1092, 1457
TaaI ACNGT 4 cut(s) 608, 1262, 1978, 2022
TaiI ACGT 4 cut(s) 569, 827, 1188, 1754
TaqII GACCGA 1 cut(s) 440
TasI AATT 7 cut(s) 517, 777, 861, 1307, 1494, 1823, 1866
TatI WGTACW 3 cut(s) 375, 396, 849
TfiI GAWTC 8 cut(s) 725, 926, 1029, 1203, 1348, 1655, 1774, 1961
Tru1I TTAA 3 cut(s) 776, 1065, 1353
Tru9I TTAA 3 cut(s) 776, 1065, 1353
TscAI CASTG 2 cut(s) 76, 254
TseI GCWGC 8 cut(s) 5, 8, 26, 363, 1538, 1561, 1594, 1675
TspDTI ATGAA 4 cut(s) 149, 803, 1752, 1862
TspGWI ACGGA 3 cut(s) 404, 538, 718
TspRI CASTG 2 cut(s) 76, 254
Tth111I GACNNNGTC 2 cut(s) 89, 548
VneI GTGCAC 2 cut(s) 1528, 1817
VpaK11BI GGWCC 1 cut(s) 611
XapI RAATTY 3 cut(s) 517, 861, 1494
XbaI TCTAGA 1 cut(s) 1498
XceI RCATGY 1 cut(s) 1538
XcmI CCANNNNNNNNNTGG 1 cut(s) 991
XmnI GAANNNNTTC 2 cut(s) 458, 883
XspI CTAG 1 cut(s) 1499
ZraI GACGTC 1 cut(s) 1186
ZrmI AGTACT 2 cut(s) 377, 398
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.