Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006338

Physical Location & Seq

Genomic Coordinates Reverse (-)

9609848 .. 9612312

Gene Structure 2465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0112500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGCCCAAGTCAAGCAACCAAGACTCGCCTTCCTCTGCAACTCAATCTACCAGAAGATCATCATCATCATGGCCCTTAAACATTCTCTTCTTCTCAATACTGCTTCCGGTGGCGGCTGCTGTGGTCCTCTACCAGCTTGACTCATTCGACCCGGCTCCTCTGCCGCTTCGCGAGTTGAGTGAGCAAGTCGTGGCTGCCCGGAGTCGTAATGCTTACATGCTCAAAGGATCGGAGTTTTTGGGTGTTGGGGCTTTAGTGGGGCCAGAAGACGTTGCTTACGATTCAAAGTCGGGACTCATTTACACGGGATGTGCGGACGGGTGGATCAAGCGAGTCAAGTTGAACGAGTCGGCTGCTGACTCGGTGGTGGAGAACTGGGTTAATACCGGCGGGAGACCACTCGGACTCGCACACGGTCATAACGGAGAGCTGTTGGTGGCGGACGGGGAAAGGGGACTACTGAGAATAGATGAGGATAGAGCAGTGGAGCTGCTGACAGATGAGGCTGAGGGTGTAAAATTCAAGCTAACAGACTGTGTAGATGTAGCGAAAGATGGCATGATTTACTTCACAGATGCTTCATATAAAAACAGCGTAGAAGACTTCATCTGGGAGTTTCTAGAGGGCAGACCCCATGGTAGGTTACTGAGCTACAATCCATCGACCAAAGAGACCAAAGTGCTTGTCCGCGATCTCTACTTTGCTAATGGAGTAGCAATCTCTCCGGATCAGAATTATGTGATCTTCTGTGAAACTTTCATGAAAAGATGTAGGAAGTACCACCTGCAAGGCGAGAAGAAGGGGAGCATAGAGAGCTTCATTGACAACTTGCCGGGCTCCCCGGATAATATCCGATATGATGGGGAAGGCCATTACTGGATTGCAATACCTATGGGGACTTCAGCTATTTTGAATAAAGCACTTGGGTACCGTTTTATCCGAAAAGGGATGGCAATCATGGAGAAGTATATAGTGAGCAGACCATATAAGGAGAAGAATTCTGGTGTAATGGCTGTGAATTTGGAAGGGGAACCTACTGCCCACTATTCTGATCCAGATTTATCACTCATTACAAGTGGGATCAAGATCGGAAACTACCTCTATTGCGGTTCGGTTCTCTATCCATACATCATCCGCCTTGATCTAGAACAACATCCTGCACATACCACTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

391

Amino Acids

43.37

Weight (kDa)

5.59

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSL_N	PF20067	74 - 112	7e-08	Strictosidine synthase-like, N-terminal
SGL	PF08450	127 - 300	1.7e-14	SMP-30/Gluconolactonase/LRE-like region
Str_synth	PF03088	179 - 264	1.3e-31	Strictosidine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66560 AT5G66560 AT5G66560 AT5G66560
fragaria_vesca	FvH4_1g14470 FvH4_1g14470 FvH4_1g14470 FvH4_1g14470 FvH4_1g14470
malus_domestica	MD02G1158300.v1.1 MD15G1273100.v1.1
prunus_persica	Prupe.7G145600_v2.0.a1 Prupe.7G145600_v2.0.a1 Prupe.7G145600_v2.0.a1 Prupe.7G145600_v2.0.a1
pyrus_communis	pycom02g12480 pycom15g23630
rosa_chinensis	RchiOBHm_Chr2g0103231
rosa_laevigata	RLG00000017216
rosa_multiflora	Rmu_sc0002218.1_g000002
rosa_roxburghii	Rroxscaffold_2G00139850
rosa_rugosa	Rorug02G0112500
rosa_samantha	Rh2AG161200 Rh2BG168000 Rh2CG168200 Rh2DG166900
rosa_wichuraiana	Rw2G012650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	792
Acc36I	ACCTGC	1 cut(s)	792
Acc65I	GGTACC	1 cut(s)	927
AccB1I	GGYRCC	1 cut(s)	927
AccII	CGCG	2 cut(s)	171, 690
AccIII	TCCGGA	1 cut(s)	724
AciI	CCGC	8 cut(s)	113, 164, 314, 390, 440, 688, 1107, 1135
AclWI	GGATC	5 cut(s)	235, 332, 735, 1046, 1088
AcsI	RAATTY	3 cut(s)	518, 997, 1018
AcuI	CTGAAG	1 cut(s)	885
AfaI	GTAC	2 cut(s)	779, 929
AfiI	CCNNNNNNNGG	1 cut(s)	639
AgsI	TTSAA	4 cut(s)	285, 343, 523, 913
AluBI	AGCT	7 cut(s)	136, 430, 490, 526, 651, 816, 905
AluI	AGCT	7 cut(s)	136, 430, 490, 526, 651, 816, 905
Alw26I	GTCTC	2 cut(s)	388, 665
AlwI	GGATC	5 cut(s)	235, 332, 735, 1046, 1088
Aor13HI	TCCGGA	1 cut(s)	724
AoxI	GGCC	3 cut(s)	71, 260, 868
ApeKI	GCWGC	4 cut(s)	116, 194, 353, 490
ApoI	RAATTY	3 cut(s)	518, 997, 1018
ArsI	GACNNNNNNTTYG	2 cut(s)	669, 701
Asp718I	GGTACC	1 cut(s)	927
AspS9I	GGNCC	3 cut(s)	72, 124, 260
AsuC2I	CCSGG	4 cut(s)	152, 199, 834, 842
AvaII	GGWCC	1 cut(s)	124
BaeI	ACNNNNGTAYC	2 cut(s)	911, 944
BanI	GGYRCC	1 cut(s)	927
BanII	GRGCYC	1 cut(s)	839
BbsI	GAAGAC	2 cut(s)	273, 606
BbvCI	CCTCAGC	1 cut(s)	507
BbvI	GCAGC	4 cut(s)	103, 181, 340, 477
BccI	CCATC	4 cut(s)	548, 667, 854, 943
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BcnI	CCSGG	4 cut(s)	152, 199, 834, 842
BcoDI	GTCTC	2 cut(s)	388, 665
BfaI	CTAG	2 cut(s)	620, 1145
BfuAI	ACCTGC	1 cut(s)	792
BisI	GCNGC	6 cut(s)	114, 117, 164, 195, 354, 491
BlsI	GCNGC	6 cut(s)	115, 118, 165, 196, 355, 492
Bme1390I	CCNGG	4 cut(s)	152, 199, 834, 842
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	3 cut(s)	72, 124, 260
BmiI	GGNNCC	5 cut(s)	156, 261, 838, 929, 1032
BmrFI	CCNGG	4 cut(s)	152, 199, 834, 842
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	1 cut(s)	565
BmuI	ACTGGG	1 cut(s)	385
BpiI	GAAGAC	2 cut(s)	273, 606
Bpu10I	CCTNAGC	1 cut(s)	507
BpuMI	CCSGG	4 cut(s)	152, 199, 834, 842
BsaBI	GATNNNNATC	3 cut(s)	61, 953, 1085
BsaI	GGTCTC	2 cut(s)	388, 665
BsaJI	CCNNGG	2 cut(s)	634, 840
BsaWI	WCCGGW	2 cut(s)	106, 724
Bsc4I	CCNNNNNNNGG	1 cut(s)	639
Bse118I	RCCGGY	1 cut(s)	386
Bse1I	ACTGG	2 cut(s)	380, 881
Bse8I	GATNNNNATC	3 cut(s)	61, 953, 1085
BseAI	TCCGGA	1 cut(s)	724
BseDI	CCNNGG	2 cut(s)	634, 840
BseGI	GGATG	4 cut(s)	314, 954, 1131, 1153
BseJI	GATNNNNATC	3 cut(s)	61, 953, 1085
BseLI	CCNNNNNNNGG	1 cut(s)	639
BseMII	CTCAG	3 cut(s)	452, 498, 638
BseNI	ACTGG	2 cut(s)	380, 881
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	4 cut(s)	103, 181, 340, 477
BsgI	GTGCAG	1 cut(s)	1143
Bsh1236I	CGCG	2 cut(s)	171, 690
BshFI	GGCC	3 cut(s)	73, 262, 870
BshNI	GGYRCC	1 cut(s)	927
BsiSI	CCGG	7 cut(s)	107, 152, 199, 387, 725, 833, 842
BslFI	GGGAC	3 cut(s)	306, 468, 910
BslI	CCNNNNNNNGG	1 cut(s)	639
BsmAI	GTCTC	2 cut(s)	388, 665
BsmFI	GGGAC	3 cut(s)	306, 468, 910
BsnI	GGCC	3 cut(s)	73, 262, 870
Bso31I	GGTCTC	2 cut(s)	388, 665
Bsp1286I	GDGCHC	1 cut(s)	839
Bsp13I	TCCGGA	1 cut(s)	724
Bsp19I	CCATGG	1 cut(s)	634
Bsp68I	TCGCGA	1 cut(s)	171
BspACI	CCGC	8 cut(s)	113, 164, 314, 390, 440, 688, 1107, 1135
BspANI	GGCC	3 cut(s)	73, 262, 870
BspCNI	CTCAG	3 cut(s)	453, 499, 639
BspEI	TCCGGA	1 cut(s)	724
BspFNI	CGCG	2 cut(s)	171, 690
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	5 cut(s)	156, 261, 838, 929, 1032
BspMI	ACCTGC	1 cut(s)	792
BspPI	GGATC	5 cut(s)	235, 332, 735, 1046, 1088
BspT107I	GGYRCC	1 cut(s)	927
BspTNI	GGTCTC	2 cut(s)	388, 665
BsrFI	RCCGGY	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	380, 881
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	2 cut(s)	634, 840
BssT1I	CCWWGG	1 cut(s)	634
Bst4CI	ACNGT	3 cut(s)	416, 536, 932
Bst6I	CTCTTC	1 cut(s)	92
BstDEI	CTNAG	3 cut(s)	461, 507, 647
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	4 cut(s)	314, 954, 1131, 1153
BstFNI	CGCG	2 cut(s)	171, 690
BstMAI	GTCTC	2 cut(s)	388, 665
BstMWI	GCNNNNNNNGC	1 cut(s)	813
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	4 cut(s)	150, 197, 832, 840
BstUI	CGCG	2 cut(s)	171, 690
BstV1I	GCAGC	4 cut(s)	103, 181, 340, 477
BstV2I	GAAGAC	2 cut(s)	273, 606
BsuRI	GGCC	3 cut(s)	73, 262, 870
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	4 cut(s)	314, 954, 1131, 1153
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	489
BtuMI	TCGCGA	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	792
CciI	TCATGA	1 cut(s)	759
Cfr10I	RCCGGY	1 cut(s)	386
Cfr13I	GGNCC	3 cut(s)	72, 124, 260
Csp6I	GTAC	2 cut(s)	778, 928
CviAII	CATG	6 cut(s)	69, 217, 559, 635, 760, 958
CviQI	GTAC	2 cut(s)	778, 928
DdeI	CTNAG	3 cut(s)	461, 507, 647
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	2 cut(s)	455, 1124
Eco130I	CCWWGG	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	839
Eco31I	GGTCTC	2 cut(s)	388, 665
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	885
EcoRI	GAATTC	1 cut(s)	997
EcoT14I	CCWWGG	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	839
ErhI	CCWWGG	1 cut(s)	634
FaeI	CATG	6 cut(s)	72, 220, 562, 638, 763, 961
FaqI	GGGAC	3 cut(s)	306, 468, 910
FatI	CATG	6 cut(s)	68, 216, 558, 634, 759, 957
FauI	CCCGC	1 cut(s)	383
Fnu4HI	GCNGC	6 cut(s)	114, 117, 164, 195, 354, 491
FokI	GGATG	4 cut(s)	321, 961, 1118, 1140
FriOI	GRGCYC	1 cut(s)	839
Fsp4HI	GCNGC	6 cut(s)	114, 117, 164, 195, 354, 491
FspBI	CTAG	2 cut(s)	620, 1145
GluI	GCNGC	6 cut(s)	114, 117, 164, 195, 354, 491
HaeIII	GGCC	3 cut(s)	73, 262, 870
HapII	CCGG	7 cut(s)	107, 152, 199, 387, 725, 833, 842
Hin1II	CATG	6 cut(s)	72, 220, 562, 638, 763, 961
HinfI	GANTC	9 cut(s)	23, 140, 202, 281, 294, 333, 347, 359, 405
HpaII	CCGG	7 cut(s)	107, 152, 199, 387, 725, 833, 842
Hpy188I	TCNGA	7 cut(s)	232, 404, 732, 854, 941, 1051, 1091
Hpy188III	TCNNGA	8 cut(s)	170, 291, 620, 725, 760, 1055, 1084, 1145
HpyAV	CCTTC	4 cut(s)	39, 793, 860, 1019
HpyCH4III	ACNGT	3 cut(s)	416, 536, 932
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	38, 787, 884, 1160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	813
HpyF3I	CTNAG	3 cut(s)	461, 507, 647
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	6 cut(s)	72, 220, 562, 638, 763, 961
Kpn2I	TCCGGA	1 cut(s)	724
KpnI	GGTACC	1 cut(s)	931
LmnI	GCTCC	4 cut(s)	160, 487, 804, 842
Lsp1109I	GCAGC	4 cut(s)	103, 181, 340, 477
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	2 cut(s)	620, 1145
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	642
MboII	GAAGA	8 cut(s)	66, 79, 82, 278, 611, 736, 808, 1006
MhlI	GDGCHC	1 cut(s)	839
MluCI	AATT	4 cut(s)	518, 733, 997, 1018
MlyI	GAGTC	8 cut(s)	17, 134, 211, 288, 342, 353, 356, 399
MnlI	CCTC	8 cut(s)	43, 137, 168, 466, 496, 502, 616, 1109
MroI	TCCGGA	1 cut(s)	724
MseI	TTAA	2 cut(s)	77, 381
MslI	CAYNNNNRTG	1 cut(s)	67
MspI	CCGG	7 cut(s)	107, 152, 199, 387, 725, 833, 842
MspR9I	CCNGG	4 cut(s)	152, 199, 834, 842
MvnI	CGCG	2 cut(s)	171, 690
MwoI	GCNNNNNNNGC	1 cut(s)	813
NciI	CCSGG	4 cut(s)	152, 199, 834, 842
NcoI	CCATGG	1 cut(s)	634
NlaIII	CATG	6 cut(s)	72, 220, 562, 638, 763, 961
NlaIV	GGNNCC	5 cut(s)	156, 261, 838, 929, 1032
NruI	TCGCGA	1 cut(s)	171
NspI	RCATGY	1 cut(s)	220
PagI	TCATGA	1 cut(s)	759
PaqCI	CACCTGC	1 cut(s)	792
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	6 cut(s)	115, 118, 165, 196, 355, 492
PleI	GAGTC	8 cut(s)	17, 134, 210, 288, 341, 353, 355, 399
PpsI	GAGTC	8 cut(s)	17, 134, 210, 288, 341, 353, 355, 399
PspN4I	GGNNCC	5 cut(s)	156, 261, 838, 929, 1032
PspPI	GGNCC	3 cut(s)	72, 124, 260
RruI	TCGCGA	1 cut(s)	171
RsaI	GTAC	2 cut(s)	779, 929
RsaNI	GTAC	2 cut(s)	778, 928
RseI	CAYNNNNRTG	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	77, 381
SatI	GCNGC	6 cut(s)	114, 117, 164, 195, 354, 491
Sau96I	GGNCC	3 cut(s)	72, 124, 260
SchI	GAGTC	8 cut(s)	17, 134, 211, 288, 342, 353, 356, 399
ScrFI	CCNGG	4 cut(s)	152, 199, 834, 842
SduI	GDGCHC	1 cut(s)	839
SfaNI	GCATC	1 cut(s)	565
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	67
Sse9I	AATT	4 cut(s)	518, 733, 997, 1018
SsiI	CCGC	8 cut(s)	113, 164, 314, 390, 440, 688, 1107, 1135
SspMI	CTAG	2 cut(s)	620, 1145
StyD4I	CCNGG	4 cut(s)	150, 197, 832, 840
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	3 cut(s)	416, 536, 932
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	147, 662
TasI	AATT	4 cut(s)	518, 733, 997, 1018
TauI	GCSGC	2 cut(s)	116, 166
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	77, 381
Tru9I	TTAA	2 cut(s)	77, 381
TscAI	CASTG	1 cut(s)	489
TseI	GCWGC	4 cut(s)	116, 194, 353, 490
TspDTI	ATGAA	5 cut(s)	570, 595, 748, 776, 808
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	489
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	3 cut(s)	518, 997, 1018
XbaI	TCTAGA	2 cut(s)	619, 1144
XceI	RCATGY	1 cut(s)	220
XspI	CTAG	2 cut(s)	620, 1145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.