Rh2CG168200

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006338
Physical Location & Seq
Reverse (-)
15049038 .. 15053593
4556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG168200.1

Sequence Viewer

Length: 1920 bp
ATGTCCTTTCATCTTCACAAGTTTCCTCTCATGTCCAAAAGCCGAAAGCTTCACAACCTAATCACGGAGCAAGAGGCTAACCCATCACATCCCCAACAAGAGCTAGAAGAAGAGCCGGACGAAATTGAAGAAGTGCAGTGTCAAATAGTCCTCTCAGACTTCCCGGGCGGCTCCGAGACCTTCGAAATCGCCGCCAAATTCTGCTACGGCGTCAAAATCGACCTCAACTCGACCAATGCGGGACCTCTCCGCTGCGCCGGAGAGTATCTAGAAATGACAGAAGAGTACTCCGAAGACAACCTCATCTCAAAAACCGAAAGGTTCCTGTCTCAAGCCGTGTTCAAGAGCTTCAAAGAGTCCATCAAAGCTCTCAAATCCTGCGAGCGCGTCATGCCACTGGCAGAGACCCTAGGCATTACACAGAGGTGCATCGACTCCATCGCTAACAGAGCCACCAACGCCGATCCGAGCCTGTTCGGCTGGCCCGTCAATGAATTCGCCCCGAACCCAAGTTCATCCAAACACCAGATTCTATGGAATGGGATTGACACAGGTGGAAGAAGAAAAGGGATGTCTAGAGCAAACCATCCAGATTCTTGGCTCGAAGACTTGGTCCTCTTAAGCCTCCCTTTCTTCAAGCGATTGATTATGGCAATGAAAGACGGAAATCTCAGCCTGGAAATGGTGGAGACCTGTTTGATGTACTACGCCAAGAAATACATTCCCGGAATCTCAAGATCGACTCGAAAGTCCTCTTCTTCCACCACCACTTCTAGCTCCTCTTTAGCTTTGGAAAACCAACAGAGAGAACTATTGGAGACCATAATCTCAAACCTTCCATTGGAGAAAACACCAAGACCTCCAACCAATACAAGATTTCTATTTGGGCTGTTGAGAACAGCGAATATCTTAAACGCCTCGCAGGGATGTAAAGCCGCATTGGAGAAGAAGATTGGGTCGCAGCTCGAGCAAGCTAGCTTAGACGATCTGCTCATACCGAGCTATTCGTATCTGAATGAGACCCTATACGACGTCGATTGCGTGGAGAGGATTCTGGGGTATTTTTTGGACGGGTTGGAGCAGAGAAACAGAAACAGAGATGGAATTGAAGGTGGAGATGAAGACGAAGACCGTGATATAGAAGGTGCTAGATCGCCGGCGCTGATGCTTGTCGGGAAATTAACCGACGAGTATCTCTCCGAGATCGCATCGGATGCGAATTTGATGCCGGATAGATTCTACAACTTTGCCATGGCGCTGCCGGAGCAGGCGAGGCTGTTCGACGACGGGCTTTACAGAGCAGTTGATGTTTATCTAAAGGCTCATCCATGGATATCGGAACCGGAGCGGGAGAAGATCTGCGGGATACTAGACTCCCAGAAGCTGACACTCGAGGCGTGCACGCACGCCGCGCAGAACGAGCGGTTGCCGCTACGCGCCGTCGTGCAAGTCTTGTTCTTCGAGCAGCTTCAGCTCCGTCACGCGATCGCCGGTACCCTTATCGCCGGGGAGACCGCGCCGCCGGACTCCAGTCGGCCCTCGGTGTTGCGAAGAGAGGCGGAGACTGAGGAGGACGAGGAGCAGGAGGAGGAGGAGGAGGAGGAAGGCGGTGCTGTGGAGGTACACGCGGAGGAAGGAGGAGGCGGCACGTGGAGGTCGGCTGTGAGGGAGAATCAGGTGCTGCGGTTGGATATGGATAGCATGAGGACACGGGTGCACCAACTTGAGCGGGAGTGTTCTAACATGAAGAAGGTGATCGAAAAGATTGACAACAAATCGGGTCAACCCGATGGACGGGCCGGATGGAAAGGCTCGTTGACCCGGCGGTTCGGGTGCAAGTTCAAGACCCAAGTGTGCGATTCGCACGAGCCGACGGTCGTGGACGGGCGGAAAGGGCGGCGCCACCAGCATCAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

639

Amino Acids

72.04

Weight (kDa)

5.15

Isoelectric Point (pI)

56.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPH3 PF03000 198 - 467 8.3e-86 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 748
AatII GACGTC 1 cut(s) 1035
Acc65I GGTACC 1 cut(s) 1493
AccB1I GGYRCC 2 cut(s) 1493, 1899
AccBSI CCGCTC 3 cut(s) 1348, 1423, 1729
AccII CGCG 6 cut(s) 387, 1412, 1437, 1484, 1517, 1628
AclWI GGATC 1 cut(s) 458
AcsI RAATTY 3 cut(s) 197, 494, 1219
AcuI CTGAAG 1 cut(s) 1454
AcvI CACGTG 1 cut(s) 1650
AcyI GRCGYC 3 cut(s) 210, 1032, 1900
AfaI GTAC 4 cut(s) 287, 704, 1495, 1623
AfiI CCNNNNNNNGG 4 cut(s) 64, 682, 841, 1794
AflII CTTAAG 1 cut(s) 619
AgsI TTSAA 6 cut(s) 128, 343, 352, 637, 1109, 1843
AjnI CCWGG 1 cut(s) 675
AleI CACNNNNGTG 1 cut(s) 424
Alw21I GWGCWC 2 cut(s) 1403, 1719
Alw26I GTCTC 8 cut(s) 170, 333, 398, 683, 812, 1013, 1505, 1556
Alw44I GTGCAC 2 cut(s) 1399, 1715
AlwI GGATC 1 cut(s) 458
AlwNI CAGNNNCTG 2 cut(s) 1384, 1681
Ama87I CYCGRG 3 cut(s) 163, 965, 1391
AoxI GGCC 3 cut(s) 482, 1535, 1797
ApaLI GTGCAC 2 cut(s) 1399, 1715
ApeKI GCWGC 5 cut(s) 252, 961, 1258, 1465, 1681
ApoI RAATTY 3 cut(s) 197, 494, 1219
ArsI GACNNNNNNTTYG 2 cut(s) 597, 629
AsiSI GCGATCGC 1 cut(s) 1488
Asp718I GGTACC 1 cut(s) 1493
AspA2I CCTAGG 1 cut(s) 409
AspLEI GCGC 8 cut(s) 257, 387, 1162, 1258, 1414, 1439, 1519, 1902
AspS9I GGNCC 5 cut(s) 242, 483, 613, 1536, 1797
AsuC2I CCSGG 5 cut(s) 164, 165, 726, 1507, 1822
AsuHPI GGTGA 1 cut(s) 1765
AsuII TTCGAA 1 cut(s) 183
AsuNHI GCTAGC 1 cut(s) 974
AvaI CYCGRG 3 cut(s) 163, 965, 1391
AvaII GGWCC 2 cut(s) 242, 613
AvrII CCTAGG 1 cut(s) 409
BaeGI GKGCMC 2 cut(s) 1403, 1719
BanI GGYRCC 2 cut(s) 1493, 1899
BauI CACGAG 1 cut(s) 1865
BbrPI CACGTG 1 cut(s) 1650
BbsI GAAGAC 4 cut(s) 300, 612, 1128, 1134
Bbv12I GWGCWC 2 cut(s) 1403, 1719
BbvI GCAGC 5 cut(s) 239, 973, 1245, 1477, 1668
BccI CCATC 7 cut(s) 91, 368, 446, 594, 1094, 1784, 1797
BceAI ACGGC 3 cut(s) 223, 320, 1424
BcgI CGANNNNNNTGC 2 cut(s) 1207, 1241
BciT130I CCWGG 1 cut(s) 677
BciVI GTATCC 1 cut(s) 1359
BcnI CCSGG 5 cut(s) 164, 165, 726, 1507, 1822
BcoDI GTCTC 8 cut(s) 170, 333, 398, 683, 812, 1013, 1505, 1556
BfaI CTAG 8 cut(s) 104, 269, 410, 576, 774, 975, 1149, 1370
BfoI RGCGCY 3 cut(s) 1163, 1259, 1903
BfrI CTTAAG 1 cut(s) 619
BfuI GTATCC 1 cut(s) 1359
BglI GCCNNNNNGGC 1 cut(s) 477
BglII AGATCT 1 cut(s) 1356
BlnI CCTAGG 1 cut(s) 409
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 6 cut(s) 164, 165, 677, 726, 1507, 1822
Bme18I GGWCC 2 cut(s) 242, 613
BmeT110I CYCGRG 3 cut(s) 163, 965, 1391
BmgT120I GGNCC 5 cut(s) 242, 483, 613, 1536, 1797
BmiI GGNNCC 6 cut(s) 172, 243, 323, 1341, 1495, 1901
BmrFI CCNGG 6 cut(s) 164, 165, 677, 726, 1507, 1822
BmsI GCATC 5 cut(s) 438, 1155, 1204, 1215, 1217
BmtI GCTAGC 1 cut(s) 978
BoxI GACNNNNGTC 1 cut(s) 1530
BpiI GAAGAC 4 cut(s) 300, 612, 1128, 1134
BplI GAGNNNNNCTC 2 cut(s) 1181, 1213
BpmI CTGGAG 1 cut(s) 1513
Bpu14I TTCGAA 1 cut(s) 183
BpuEI CTTGAG 3 cut(s) 315, 718, 1745
BpuMI CCSGG 5 cut(s) 164, 165, 726, 1507, 1822
BsaAI YACGTR 1 cut(s) 1650
BsaBI GATNNNNATC 1 cut(s) 1311
BsaHI GRCGYC 3 cut(s) 210, 1032, 1900
BsaI GGTCTC 6 cut(s) 170, 398, 683, 812, 1013, 1505
BsaJI CCNNGG 6 cut(s) 163, 409, 1251, 1328, 1506, 1539
BsaWI WCCGGW 1 cut(s) 1342
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 682, 841, 1794
Bse118I RCCGGY 2 cut(s) 1156, 1490
Bse1I ACTGG 2 cut(s) 402, 1530
Bse3DI GCAATG 1 cut(s) 660
Bse8I GATNNNNATC 1 cut(s) 1311
BseBI CCWGG 1 cut(s) 677
BseDI CCNNGG 6 cut(s) 163, 409, 1251, 1328, 1506, 1539
BseGI GGATG 8 cut(s) 88, 515, 576, 586, 932, 1219, 1324, 1808
BseJI GATNNNNATC 1 cut(s) 1311
BseLI CCNNNNNNNGG 4 cut(s) 64, 682, 841, 1794
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 3 cut(s) 168, 685, 1557
BseNI ACTGG 2 cut(s) 402, 1530
BseRI GAGGAG 9 cut(s) 769, 1583, 1592, 1601, 1604, 1607, 1610, 1613, 1653
BseSI GKGCMC 2 cut(s) 1403, 1719
BseXI GCAGC 5 cut(s) 239, 973, 1245, 1477, 1668
BsgI GTGCAG 1 cut(s) 155
Bsh1236I CGCG 6 cut(s) 387, 1412, 1437, 1484, 1517, 1628
Bsh1285I CGRYCG 2 cut(s) 1488, 1878
BshFI GGCC 3 cut(s) 484, 1537, 1799
BshNI GGYRCC 2 cut(s) 1493, 1899
BsiEI CGRYCG 2 cut(s) 1488, 1878
BsiHKAI GWGCWC 2 cut(s) 1403, 1719
BsiHKCI CYCGRG 3 cut(s) 163, 965, 1391
BslFI GGGAC 1 cut(s) 255
BslI CCNNNNNNNGG 4 cut(s) 64, 682, 841, 1794
BsmAI GTCTC 8 cut(s) 170, 333, 398, 683, 812, 1013, 1505, 1556
BsmFI GGGAC 1 cut(s) 255
BsnI GGCC 3 cut(s) 484, 1537, 1799
Bso31I GGTCTC 6 cut(s) 170, 398, 683, 812, 1013, 1505
BsoBI CYCGRG 3 cut(s) 163, 965, 1391
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 1403, 1719
Bsp143I GATC 8 cut(s) 463, 737, 985, 1151, 1203, 1356, 1485, 1755
Bsp19I CCATGG 2 cut(s) 1251, 1328
BspANI GGCC 3 cut(s) 484, 1537, 1799
BspCNI CTCAG 3 cut(s) 167, 684, 1558
BspFNI CGCG 6 cut(s) 387, 1412, 1437, 1484, 1517, 1628
BspLI GGNNCC 6 cut(s) 172, 243, 323, 1341, 1495, 1901
BspOI GCTAGC 1 cut(s) 978
BspPI GGATC 1 cut(s) 458
BspQI GCTCTTC 1 cut(s) 105
BspT104I TTCGAA 1 cut(s) 183
BspT107I GGYRCC 2 cut(s) 1493, 1899
BspTI CTTAAG 1 cut(s) 619
BspTNI GGTCTC 6 cut(s) 170, 398, 683, 812, 1013, 1505
BsrBI CCGCTC 3 cut(s) 1348, 1423, 1729
BsrDI GCAATG 1 cut(s) 660
BsrFI RCCGGY 2 cut(s) 1156, 1490
BsrI ACTGG 2 cut(s) 402, 1530
BssAI RCCGGY 2 cut(s) 1156, 1490
BssECI CCNNGG 6 cut(s) 163, 409, 1251, 1328, 1506, 1539
BssMI GATC 8 cut(s) 463, 737, 985, 1151, 1203, 1356, 1485, 1755
BssNI GRCGYC 3 cut(s) 210, 1032, 1900
BssSI CACGAG 1 cut(s) 1865
BssT1I CCWWGG 3 cut(s) 409, 1251, 1328
Bst2BI CACGAG 1 cut(s) 1865
Bst2UI CCWGG 1 cut(s) 677
Bst4CI ACNGT 2 cut(s) 1133, 1876
Bst6I CTCTTC 4 cut(s) 105, 276, 760, 1546
BstACI GRCGYC 3 cut(s) 210, 1032, 1900
BstAFI CTTAAG 1 cut(s) 619
BstAPI GCANNNNNTGC 1 cut(s) 1214
BstBAI YACGTR 1 cut(s) 1650
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 9 cut(s) 383, 482, 972, 976, 1158, 1269, 1399, 1403, 1407
BstDEI CTNAG 4 cut(s) 154, 671, 979, 1566
BstDSI CCRYGG 2 cut(s) 1251, 1328
BstF5I GGATG 8 cut(s) 88, 515, 576, 586, 932, 1219, 1324, 1808
BstFNI CGCG 6 cut(s) 387, 1412, 1437, 1484, 1517, 1628
BstH2I RGCGCY 3 cut(s) 1163, 1259, 1903
BstHHI GCGC 8 cut(s) 257, 387, 1162, 1258, 1414, 1439, 1519, 1902
BstKTI GATC 8 cut(s) 466, 740, 988, 1154, 1206, 1359, 1488, 1758
BstMAI GTCTC 8 cut(s) 170, 333, 398, 683, 812, 1013, 1505, 1556
BstMBI GATC 8 cut(s) 463, 737, 985, 1151, 1203, 1356, 1485, 1755
BstMCI CGRYCG 2 cut(s) 1488, 1878
BstNI CCWGG 1 cut(s) 677
BstPAI GACNNNNGTC 1 cut(s) 1530
BstSCI CCNGG 6 cut(s) 162, 163, 675, 724, 1505, 1820
BstSLI GKGCMC 2 cut(s) 1403, 1719
BstUI CGCG 6 cut(s) 387, 1412, 1437, 1484, 1517, 1628
BstV1I GCAGC 5 cut(s) 239, 973, 1245, 1477, 1668
BstV2I GAAGAC 4 cut(s) 300, 612, 1128, 1134
BstX2I RGATCY 1 cut(s) 1356
BstXI CCANNNNNNTGG 1 cut(s) 597
BstYI RGATCY 1 cut(s) 1356
BsuI GTATCC 1 cut(s) 1359
BsuRI GGCC 3 cut(s) 484, 1537, 1799
BtgI CCRYGG 2 cut(s) 1251, 1328
BtgZI GCGATG 1 cut(s) 424
BtsCI GGATG 8 cut(s) 88, 515, 576, 586, 932, 1219, 1324, 1808
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 2 cut(s) 143, 395
Cac8I GCNNGC 9 cut(s) 383, 482, 972, 976, 1158, 1269, 1399, 1403, 1407
CaiI CAGNNNCTG 2 cut(s) 1384, 1681
CfoI GCGC 8 cut(s) 257, 387, 1162, 1258, 1414, 1439, 1519, 1902
Cfr10I RCCGGY 2 cut(s) 1156, 1490
Cfr13I GGNCC 5 cut(s) 242, 483, 613, 1536, 1797
Cfr9I CCCGGG 1 cut(s) 163
CseI GACGC 2 cut(s) 199, 376
Csp6I GTAC 4 cut(s) 286, 703, 1494, 1622
CviAII CATG 6 cut(s) 31, 391, 1252, 1329, 1702, 1744
CviQI GTAC 4 cut(s) 286, 703, 1494, 1622
DdeI CTNAG 4 cut(s) 154, 671, 979, 1566
DinI GGCGCC 1 cut(s) 1901
DpnI GATC 8 cut(s) 465, 739, 987, 1153, 1205, 1358, 1487, 1757
DpnII GATC 8 cut(s) 463, 737, 985, 1151, 1203, 1356, 1485, 1755
DrdI GACNNNNNNGTC 1 cut(s) 748
DseDI GACNNNNNNGTC 1 cut(s) 748
Eam1104I CTCTTC 4 cut(s) 105, 276, 760, 1546
EarI CTCTTC 4 cut(s) 105, 276, 760, 1546
EciI GGCGGA 2 cut(s) 1574, 1903
Eco130I CCWWGG 3 cut(s) 409, 1251, 1328
Eco31I GGTCTC 6 cut(s) 170, 398, 683, 812, 1013, 1505
Eco32I GATATC 1 cut(s) 1335
Eco47I GGWCC 2 cut(s) 242, 613
Eco57I CTGAAG 1 cut(s) 1454
Eco72I CACGTG 1 cut(s) 1650
Eco88I CYCGRG 3 cut(s) 163, 965, 1391
EcoO109I RGGNCCY 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 1 cut(s) 675
EcoRV GATATC 1 cut(s) 1335
EcoT14I CCWWGG 3 cut(s) 409, 1251, 1328
EgeI GGCGCC 1 cut(s) 1901
EheI GGCGCC 1 cut(s) 1901
ErhI CCWWGG 3 cut(s) 409, 1251, 1328
FaeI CATG 6 cut(s) 34, 394, 1255, 1332, 1705, 1747
FalI AAGNNNNNCTT 2 cut(s) 613, 645
FaqI GGGAC 1 cut(s) 255
FatI CATG 6 cut(s) 30, 390, 1251, 1328, 1701, 1743
FauI CCCGC 4 cut(s) 232, 1341, 1355, 1722
FokI GGATG 8 cut(s) 75, 502, 573, 583, 939, 1226, 1311, 1815
FspBI CTAG 8 cut(s) 104, 269, 410, 576, 774, 975, 1149, 1370
GlaI GCGC 8 cut(s) 256, 386, 1161, 1257, 1413, 1438, 1518, 1901
GsuI CTGGAG 1 cut(s) 1513
HaeII RGCGCY 3 cut(s) 1163, 1259, 1903
HaeIII GGCC 3 cut(s) 484, 1537, 1799
HgaI GACGC 2 cut(s) 199, 376
HhaI GCGC 8 cut(s) 257, 387, 1162, 1258, 1414, 1439, 1519, 1902
Hin1I GRCGYC 3 cut(s) 210, 1032, 1900
Hin1II CATG 6 cut(s) 34, 394, 1255, 1332, 1705, 1747
Hin6I GCGC 8 cut(s) 255, 385, 1160, 1256, 1412, 1437, 1517, 1900
HinP1I GCGC 8 cut(s) 255, 385, 1160, 1256, 1412, 1437, 1517, 1900
HincII GTYRAC 2 cut(s) 1784, 1818
HindII GTYRAC 2 cut(s) 1784, 1818
HindIII AAGCTT 1 cut(s) 47
HphI GGTGA 1 cut(s) 1765
Hpy166II GTNNAC 6 cut(s) 1401, 1624, 1717, 1784, 1818, 1882
Hpy188I TCNGA 8 cut(s) 157, 175, 292, 468, 1014, 1201, 1213, 1339
Hpy188III TCNNGA 7 cut(s) 269, 343, 576, 590, 735, 1174, 1843
Hpy8I GTNNAC 6 cut(s) 1401, 1624, 1717, 1784, 1818, 1882
Hpy99I CGWCG 7 cut(s) 1034, 1037, 1190, 1286, 1289, 1445, 1876
HpyAV CCTTC 7 cut(s) 190, 845, 1103, 1136, 1598, 1628, 1744
HpyCH4III ACNGT 2 cut(s) 1133, 1876
HpyCH4IV ACGT 2 cut(s) 1032, 1649
HpyCH4V TGCA 6 cut(s) 136, 429, 1401, 1447, 1717, 1836
HpyF3I CTNAG 4 cut(s) 154, 671, 979, 1566
HpySE526I ACGT 2 cut(s) 1032, 1649
Hsp92I GRCGYC 3 cut(s) 210, 1032, 1900
Hsp92II CATG 6 cut(s) 34, 394, 1255, 1332, 1705, 1747
HspAI GCGC 8 cut(s) 255, 385, 1160, 1256, 1412, 1437, 1517, 1900
KasI GGCGCC 1 cut(s) 1899
KpnI GGTACC 1 cut(s) 1497
KroI GCCGGC 1 cut(s) 1156
KroNI GCCGGC 1 cut(s) 1158
Kzo9I GATC 8 cut(s) 463, 737, 985, 1151, 1203, 1356, 1485, 1755
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 8 cut(s) 67, 176, 782, 1078, 1264, 1345, 1479, 1579
Lsp1109I GCAGC 5 cut(s) 239, 973, 1245, 1477, 1668
LweI GCATC 5 cut(s) 438, 1155, 1204, 1215, 1217
MaeI CTAG 8 cut(s) 104, 269, 410, 576, 774, 975, 1149, 1370
MaeII ACGT 2 cut(s) 1032, 1649
MaeIII GTNAC 1 cut(s) 1478
MalI GATC 8 cut(s) 465, 739, 987, 1153, 1205, 1358, 1487, 1757
MbiI CCGCTC 3 cut(s) 1348, 1423, 1729
MboI GATC 8 cut(s) 463, 737, 985, 1151, 1203, 1356, 1485, 1755
MflI RGATCY 1 cut(s) 1356
MhlI GDGCHC 2 cut(s) 1403, 1719
MluCI AATT 6 cut(s) 123, 197, 494, 1104, 1178, 1219
Mly113I GGCGCC 1 cut(s) 1900
MlyI GAGTC 5 cut(s) 365, 428, 736, 1367, 1520
MmeI TCCRAC 3 cut(s) 887, 1056, 1668
MreI CGCCGGCG 1 cut(s) 1156
MroNI GCCGGC 1 cut(s) 1156
MseI TTAA 3 cut(s) 620, 911, 1181
MslI CAYNNNNRTG 1 cut(s) 424
MspA1I CMGCKG 1 cut(s) 252
MspCI CTTAAG 1 cut(s) 619
MspR9I CCNGG 6 cut(s) 164, 165, 677, 726, 1507, 1822
MvaI CCWGG 1 cut(s) 677
MvnI CGCG 6 cut(s) 387, 1412, 1437, 1484, 1517, 1628
NaeI GCCGGC 1 cut(s) 1158
NarI GGCGCC 1 cut(s) 1900
NciI CCSGG 5 cut(s) 164, 165, 726, 1507, 1822
NcoI CCATGG 2 cut(s) 1251, 1328
NdeII GATC 8 cut(s) 463, 737, 985, 1151, 1203, 1356, 1485, 1755
NgoMIV GCCGGC 1 cut(s) 1156
NheI GCTAGC 1 cut(s) 974
NlaIII CATG 6 cut(s) 34, 394, 1255, 1332, 1705, 1747
NlaIV GGNNCC 6 cut(s) 172, 243, 323, 1341, 1495, 1901
NmuCI GTSAC 1 cut(s) 1478
NspV TTCGAA 1 cut(s) 183
OliI CACNNNNGTG 1 cut(s) 424
PaeR7I CTCGAG 2 cut(s) 965, 1391
PciSI GCTCTTC 1 cut(s) 105
PcsI WCGNNNNNNNCGW 3 cut(s) 483, 1038, 1868
PdiI GCCGGC 1 cut(s) 1158
PfeI GAWTC 7 cut(s) 529, 593, 729, 1051, 1236, 1672, 1859
PflFI GACNNNGTC 1 cut(s) 611
PfoI TCCNGGA 1 cut(s) 724
Ple19I CGATCG 1 cut(s) 1488
PleI GAGTC 5 cut(s) 364, 428, 736, 1367, 1520
PluTI GGCGCC 1 cut(s) 1903
PmaCI CACGTG 1 cut(s) 1650
PmlI CACGTG 1 cut(s) 1650
PpsI GAGTC 5 cut(s) 364, 428, 736, 1367, 1520
Ppu21I YACGTR 1 cut(s) 1650
PpuMI RGGWCCY 1 cut(s) 242
PshAI GACNNNNGTC 1 cut(s) 1530
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 675
PspCI CACGTG 1 cut(s) 1650
PspGI CCWGG 1 cut(s) 675
PspN4I GGNNCC 6 cut(s) 172, 243, 323, 1341, 1495, 1901
PspPI GGNCC 5 cut(s) 242, 483, 613, 1536, 1797
PspPPI RGGWCCY 1 cut(s) 242
PspXI VCTCGAGB 2 cut(s) 965, 1391
PstNI CAGNNNCTG 2 cut(s) 1384, 1681
PsuI RGATCY 1 cut(s) 1356
PsyI GACNNNGTC 1 cut(s) 611
PvuI CGATCG 1 cut(s) 1488
RgaI GCGATCGC 1 cut(s) 1488
RsaI GTAC 4 cut(s) 287, 704, 1495, 1623
RsaNI GTAC 4 cut(s) 286, 703, 1494, 1622
RseI CAYNNNNRTG 1 cut(s) 424
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 3 cut(s) 620, 911, 1181
Sau3AI GATC 8 cut(s) 463, 737, 985, 1151, 1203, 1356, 1485, 1755
Sau96I GGNCC 5 cut(s) 242, 483, 613, 1536, 1797
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 5 cut(s) 365, 428, 736, 1367, 1520
ScrFI CCNGG 6 cut(s) 164, 165, 677, 726, 1507, 1822
SduI GDGCHC 2 cut(s) 1403, 1719
SfaAI GCGATCGC 1 cut(s) 1488
SfaNI GCATC 5 cut(s) 438, 1155, 1204, 1215, 1217
SfoI GGCGCC 1 cut(s) 1901
Sfr274I CTCGAG 2 cut(s) 965, 1391
SfuI TTCGAA 1 cut(s) 183
SgfI GCGATCGC 1 cut(s) 1488
SgrAI CRCCGGYG 1 cut(s) 1156
SinI GGWCC 2 cut(s) 242, 613
SlaI CTCGAG 2 cut(s) 965, 1391
SmaI CCCGGG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 424
SmlI CTYRAG 6 cut(s) 330, 619, 733, 965, 1391, 1724
SmoI CTYRAG 6 cut(s) 330, 619, 733, 965, 1391, 1724
Sse9I AATT 6 cut(s) 123, 197, 494, 1104, 1178, 1219
SspDI GGCGCC 1 cut(s) 1899
SspMI CTAG 8 cut(s) 104, 269, 410, 576, 774, 975, 1149, 1370
StyD4I CCNGG 6 cut(s) 162, 163, 675, 724, 1505, 1820
StyI CCWWGG 3 cut(s) 409, 1251, 1328
TaaI ACNGT 2 cut(s) 1133, 1876
TaiI ACGT 2 cut(s) 1035, 1652
TasI AATT 6 cut(s) 123, 197, 494, 1104, 1178, 1219
TatI WGTACW 2 cut(s) 285, 702
TauI GCSGC 8 cut(s) 171, 194, 938, 1412, 1432, 1522, 1647, 1900
TfiI GAWTC 7 cut(s) 529, 593, 729, 1051, 1236, 1672, 1859
Tru1I TTAA 3 cut(s) 620, 911, 1181
Tru9I TTAA 3 cut(s) 620, 911, 1181
TscAI CASTG 2 cut(s) 143, 402
TseFI GTSAC 1 cut(s) 1478
TseI GCWGC 5 cut(s) 252, 961, 1258, 1465, 1681
Tsp45I GTSAC 1 cut(s) 1478
TspDTI ATGAA 5 cut(s) 504, 507, 671, 1134, 1760
TspGWI ACGGA 3 cut(s) 80, 678, 1466
TspMI CCCGGG 1 cut(s) 163
TspRI CASTG 2 cut(s) 143, 402
Tth111I GACNNNGTC 1 cut(s) 611
Vha464I CTTAAG 1 cut(s) 619
VneI GTGCAC 2 cut(s) 1399, 1715
VpaK11BI GGWCC 2 cut(s) 242, 613
XapI RAATTY 3 cut(s) 197, 494, 1219
XbaI TCTAGA 2 cut(s) 268, 575
XhoI CTCGAG 2 cut(s) 965, 1391
XmaI CCCGGG 1 cut(s) 163
XmaJI CCTAGG 1 cut(s) 409
XspI CTAG 8 cut(s) 104, 269, 410, 576, 774, 975, 1149, 1370
ZraI GACGTC 1 cut(s) 1033
ZrmI AGTACT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.