Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006338

Physical Location & Seq

Genomic Coordinates Reverse (-)

9069369 .. 9071779

Gene Structure 2411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g12480.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2073 bp

ATGGCAGCATCAGCGGCGGCGACGGCCACGGCGGCAGCTGAGAAATCAAGCTCCAAAGGCCAAGCATGGTTCTGCACCACTGGATTACCAAGCGACATTGTCGTCGAAGTCGACGACATGACCTTCCATCTCCACAAGTTCCCTCTGATGTCGAAAAGTCAAAAGCTTCACAACCTGATCACAGAGCAAGAGGCGAACCCATCAAACCCCCACCAGCAAGTTGATAACGACGTAGACGACGAAATCGAAGAAGTCCAGTGCCAAATATCCCTCTCGGACTTCCCCGGCGGTTCCGAGACCTTCGAGATCGCCGCCAAGTTCTGCTACGGCGTCAAGATCGACCTGAGCTCCTCCAACGTCGTGCCGTTACGTTGCGCCGGAGAGTATTTGGAGATGACGGAGGAGTACTCGGAGGACAACCTTATTTCGAAAACTGAGAGGTTTCTTACTCAGTCGGTGCTGAAAAGTTTCAAGGAGTCGCTCAGAGCTCTCAAGTCCTGCGAGCGAGTGGCGCCTCTGGCGGAGAAATTGGGGATAACGCAGAGGTGCATAGACTCCGTCGCTTCCCGCGCCACGTCCGCCGATCCCACCCTGTTTGGCTGGCCGGTTGGTGACGGGGGACCCAATCGGAATACTAATGCCGATACTGTTTCGGCTTCTTCTGCTTCCAAACAGCAGATTTTATGGAATGGGATCGACGCGGGCGGCGGACGGAGAAGATCCAAACACGCGGATTCATGGCTTGAAGACTTGGTCGTTCTGAGCTTGCCTCTCTTCAAGCGGTTGATTTCCGCCATGAAATCTGGAGATCTGAGCTTGGAGATGGTGGAGACGTGCTTGATGCATTATGCTAAGAAGTACATTCCTGGAATTTCGAGAACGAATCGAAAGCCTTCGTCTTCTTCCTCAGGCGTCGCCGCCGCCACTACCGCCGCCGCATCATCGGGTTTAGCTTCGGAGAGTCAGCAGAGAGAACTTTTGGAGACCATCATCTCCAATCTTCCATTGGAGAAGAGCTCCAGACCTTCGACCGCGACTCGATTCCTCTTCGGGCTTTTGCGAACCGCCAACATACTCAACGCCTCCGATGCCTGCAAGGCTGCCTTGGAGAAGAAGATCGCGTTGCAGCTCCACCAAGCCACCTTAGACGACCTTCTCATCCCGAGCTATTCCTACCTGAACGAGACGCTCTACGACGTCGATTGCATCGAGCGGATCCTCGGCTACTTCTTGAACGACTTGGATCAGGGAAACACCGCCGGAATCGAAGACGACGACGGTTCTGGCGGCGCAGTCCGATCTCCGTCGCTGATGCTCGTCGGAAAACTGATCGACGAGTTTCTCTCCGAGATCGCCTCCGATGCGAATCTCAAACCGGATCGGTTCTACAATCTCGCGATTTCTTTGCCTGATCAAGCTCGGCTCTTCGACGACGGTCTCTACAGAGCCGTCGATGTTTATCTCAAGGCTCATCCATCGCTATCGGAACCTGAGCGCGAGAAGGTCTGCGGTATTCTGGACTGCCAGAAGCTGACGCTGGAGGCGTGCACGCACGCGGCGCAGAACGAGCGATTGCCGCTGCGCGCGGTGGTGCAGGTTCTGTTCTTTGAGCAGCTCCAGCTCCGTCACGCAATCGCCGGAACTCTTCTCGCCGCCGATGTCTCTCCGCCGGAGTCGGCCAGGCCGTCGGTGCTGCGACGCGAGCCAGAGGATGAGGAGGAAGAAGACGATGATGACGCGGCGGAGGCACGCGGGGAGGAAGAGGAGAATAGAGTGGCACGTGCGGAGGAAAGTGGCGGCACGTGGCGGGCGGCGGTGAGGGAGAATCAGGTGTTGCGGTTGGACATGGATAGCATGAGGACGCGGGTGCACCAACTAGAGCGGGAATGCTCCAGCATGAAAAAGGTAATCGAGAAGATTGATAAGTCGGGTCAACCCGGGATAGACGGTTCGGGTTGGAAAAAGTCGTTGACCCGGAGGTTCGGGTGCAAGTTCAAGACCCAGGTGTGCGATTCGCACGAACCTACGGTCGTCGATACGAGAAAAGGACGGCGACACCATCACCAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

691

Amino Acids

75.9

Weight (kDa)

5.22

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66560 AT5G66560 AT5G66560 AT5G66560
fragaria_vesca	FvH4_1g14470 FvH4_1g14470 FvH4_1g14470 FvH4_1g14470 FvH4_1g14470
malus_domestica	MD02G1158300.v1.1 MD15G1273100.v1.1
prunus_persica	Prupe.7G145600_v2.0.a1 Prupe.7G145600_v2.0.a1 Prupe.7G145600_v2.0.a1 Prupe.7G145600_v2.0.a1
pyrus_communis	pycom02g12480 pycom15g23630
rosa_chinensis	RchiOBHm_Chr2g0103231
rosa_laevigata	RLG00000017216
rosa_multiflora	Rmu_sc0002218.1_g000002
rosa_roxburghii	Rroxscaffold_2G00139850
rosa_rugosa	Rorug02G0112500
rosa_samantha	Rh2AG161200 Rh2BG168000 Rh2CG168200 Rh2DG166900
rosa_wichuraiana	Rw2G012650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AatII	GACGTC	1 cut(s)	1200
Acc36I	ACCTGC	1 cut(s)	1585
AccB1I	GGYRCC	1 cut(s)	511
AccBSI	CCGCTC	2 cut(s)	1213, 1882
AccI	GTMKAC	2 cut(s)	111, 234
AclWI	GGATC	7 cut(s)	578, 701, 714, 1210, 1223, 1251, 1386
AcoI	YGGCCR	3 cut(s)	24, 602, 1677
AcsI	RAATTY	1 cut(s)	870
AcvI	CACGTG	2 cut(s)	1781, 1803
AcyI	GRCGYC	4 cut(s)	330, 512, 912, 1197
AfaI	GTAC	2 cut(s)	407, 860
AgsI	TTSAA	5 cut(s)	472, 746, 778, 1234, 1996
AjiI	CACGTC	2 cut(s)	576, 834
AjnI	CCWGG	3 cut(s)	865, 1679, 2001
AloI	GAACNNNNNNTCC	2 cut(s)	1933, 1965
Alw21I	GWGCWC	5 cut(s)	350, 490, 1019, 1550, 1872
Alw26I	GTCTC	6 cut(s)	290, 824, 977, 1178, 1442, 1666
Alw44I	GTGCAC	2 cut(s)	1546, 1868
AlwI	GGATC	7 cut(s)	578, 701, 714, 1210, 1223, 1251, 1386
AlwNI	CAGNNNCTG	2 cut(s)	1531, 1600
Ama87I	CYCGRG	2 cut(s)	1162, 1937
AoxI	GGCC	5 cut(s)	24, 58, 602, 1677, 1682
ApaLI	GTGCAC	2 cut(s)	1546, 1868
ApeKI	GCWGC	7 cut(s)	5, 35, 1100, 1126, 1579, 1612, 1693
ApoI	RAATTY	1 cut(s)	870
ArsI	GACNNNNNNTTYG	2 cut(s)	2013, 2045
Asp700I	GAANNNNTTC	2 cut(s)	467, 892
AspLEI	GCGC	8 cut(s)	377, 514, 572, 1292, 1497, 1561, 1584, 1586
AspS9I	GGNCC	1 cut(s)	620
AsuC2I	CCSGG	4 cut(s)	285, 1938, 1939, 1975
AsuHPI	GGTGA	3 cut(s)	623, 1828, 2054
AsuII	TTCGAA	1 cut(s)	428
AvaI	CYCGRG	2 cut(s)	1162, 1937
AvaII	GGWCC	1 cut(s)	620
AxyI	CCTNAGG	1 cut(s)	907
BaeGI	GKGCMC	2 cut(s)	1550, 1872
BamHI	GGATCC	1 cut(s)	1215
BanI	GGYRCC	1 cut(s)	511
BanII	GRGCYC	3 cut(s)	350, 490, 1019
BbrPI	CACGTG	2 cut(s)	1781, 1803
BbsI	GAAGAC	4 cut(s)	753, 891, 1275, 1731
Bbv12I	GWGCWC	5 cut(s)	350, 490, 1019, 1550, 1872
BbvI	GCAGC	7 cut(s)	17, 47, 1087, 1138, 1566, 1624, 1680
BccI	CCATC	6 cut(s)	135, 208, 817, 995, 1483, 2067
BceAI	ACGGC	7 cut(s)	39, 45, 343, 349, 1433, 1669, 2066
BcgI	CGANNNNNNTGC	2 cut(s)	1387, 1421
BciT130I	CCWGG	3 cut(s)	867, 1681, 2003
BclI	TGATCA	2 cut(s)	177, 1411
BcnI	CCSGG	4 cut(s)	285, 1938, 1939, 1975
BcoDI	GTCTC	6 cut(s)	290, 824, 977, 1178, 1442, 1666
BfaI	CTAG	1 cut(s)	1877
BfmI	CTRYAG	1 cut(s)	1441
BfoI	RGCGCY	1 cut(s)	515
BfuAI	ACCTGC	1 cut(s)	1585
BglI	GCCNNNNNGGC	2 cut(s)	32, 1097
BglII	AGATCT	1 cut(s)	808
BmcAI	AGTACT	1 cut(s)	407
Bme1390I	CCNGG	7 cut(s)	285, 867, 1681, 1938, 1939, 1975, 2003
Bme18I	GGWCC	1 cut(s)	620
BmeT110I	CYCGRG	2 cut(s)	1162, 1937
BmgBI	CACGTC	2 cut(s)	576, 834
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	6 cut(s)	292, 513, 621, 622, 1217, 1488
BmrFI	CCNGG	7 cut(s)	285, 867, 1681, 1938, 1939, 1975, 2003
BmsI	GCATC	7 cut(s)	17, 831, 947, 1078, 1215, 1302, 1351
BoxI	GACNNNNGTC	1 cut(s)	1434
BpiI	GAAGAC	4 cut(s)	753, 891, 1275, 1731
BpmI	CTGGAG	5 cut(s)	825, 1003, 1559, 1601, 1876
Bpu10I	CCTNAGC	2 cut(s)	344, 1491
Bpu14I	TTCGAA	1 cut(s)	428
BpuEI	CTTGAG	2 cut(s)	476, 1448
BpuMI	CCSGG	4 cut(s)	285, 1938, 1939, 1975
BsaAI	YACGTR	2 cut(s)	1781, 1803
BsaBI	GATNNNNATC	2 cut(s)	1365, 1458
BsaHI	GRCGYC	4 cut(s)	330, 512, 912, 1197
BsaI	GGTCTC	3 cut(s)	290, 977, 1442
BsaJI	CCNNGG	6 cut(s)	27, 283, 1104, 1219, 1937, 2001
BsaWI	WCCGGW	1 cut(s)	1375
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bse118I	RCCGGY	1 cut(s)	604
Bse1I	ACTGG	2 cut(s)	85, 256
Bse21I	CCTNAGG	1 cut(s)	907
Bse8I	GATNNNNATC	2 cut(s)	1365, 1458
BseBI	CCWGG	3 cut(s)	867, 1681, 2003
BseDI	CCNNGG	6 cut(s)	27, 283, 1104, 1219, 1937, 2001
BseGI	GGATG	3 cut(s)	1158, 1471, 1717
BseJI	GATNNNNATC	2 cut(s)	1365, 1458
BseMII	CTCAG	9 cut(s)	30, 335, 426, 464, 496, 752, 803, 921, 1482
BseNI	ACTGG	2 cut(s)	85, 256
BsePI	GCGCGC	1 cut(s)	1582
BseRI	GAGGAG	4 cut(s)	340, 416, 1730, 1778
BseSI	GKGCMC	2 cut(s)	1550, 1872
BseXI	GCAGC	7 cut(s)	17, 47, 1087, 1138, 1566, 1624, 1680
BsgI	GTGCAG	2 cut(s)	58, 1613
Bsh1285I	CGRYCG	2 cut(s)	1032, 2031
BshFI	GGCC	5 cut(s)	26, 60, 604, 1679, 1684
BshNI	GGYRCC	1 cut(s)	511
BsiEI	CGRYCG	2 cut(s)	1032, 2031
BsiHKAI	GWGCWC	5 cut(s)	350, 490, 1019, 1550, 1872
BsiHKCI	CYCGRG	2 cut(s)	1162, 1937
BsiSI	CCGG	9 cut(s)	285, 378, 605, 1260, 1376, 1638, 1670, 1938, 1975
BslFI	GGGAC	1 cut(s)	633
BsmAI	GTCTC	6 cut(s)	290, 824, 977, 1178, 1442, 1666
BsmBI	CGTCTC	2 cut(s)	824, 1178
BsmFI	GGGAC	1 cut(s)	633
BsmI	GAATGC	1 cut(s)	1892
BsnI	GGCC	5 cut(s)	26, 60, 604, 1679, 1684
Bso31I	GGTCTC	3 cut(s)	290, 977, 1442
BsoBI	CYCGRG	2 cut(s)	1162, 1937
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	5 cut(s)	350, 490, 1019, 1550, 1872
Bsp68I	TCGCGA	1 cut(s)	1397
BspANI	GGCC	5 cut(s)	26, 60, 604, 1679, 1684
BspCNI	CTCAG	9 cut(s)	31, 336, 427, 463, 495, 753, 804, 920, 1483
BspLI	GGNNCC	6 cut(s)	292, 513, 621, 622, 1217, 1488
BspMI	ACCTGC	1 cut(s)	1585
BspPI	GGATC	7 cut(s)	578, 701, 714, 1210, 1223, 1251, 1386
BspQI	GCTCTTC	2 cut(s)	1007, 1430
BspT104I	TTCGAA	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	511
BspTNI	GGTCTC	3 cut(s)	290, 977, 1442
BsrBI	CCGCTC	2 cut(s)	1213, 1882
BsrFI	RCCGGY	1 cut(s)	604
BsrI	ACTGG	2 cut(s)	85, 256
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	6 cut(s)	27, 283, 1104, 1219, 1937, 2001
BssHII	GCGCGC	1 cut(s)	1582
BssNI	GRCGYC	4 cut(s)	330, 512, 912, 1197
BssT1I	CCWWGG	1 cut(s)	1104
Bst2UI	CCWGG	3 cut(s)	867, 1681, 2003
Bst4CI	ACNGT	6 cut(s)	649, 1280, 1436, 1949, 2029, 2070
Bst6I	CTCTTC	6 cut(s)	779, 1007, 1052, 1430, 1650, 1755
BstACI	GRCGYC	4 cut(s)	330, 512, 912, 1197
BstBAI	YACGTR	2 cut(s)	1781, 1803
BstBI	TTCGAA	1 cut(s)	428
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	1158, 1471, 1717
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	8 cut(s)	377, 514, 572, 1292, 1497, 1561, 1584, 1586
BstMAI	GTCTC	6 cut(s)	290, 824, 977, 1178, 1442, 1666
BstMCI	CGRYCG	2 cut(s)	1032, 2031
BstNI	CCWGG	3 cut(s)	867, 1681, 2003
BstPAI	GACNNNNGTC	1 cut(s)	1434
BstSCI	CCNGG	7 cut(s)	283, 865, 1679, 1936, 1937, 1973, 2001
BstSFI	CTRYAG	1 cut(s)	1441
BstSLI	GKGCMC	2 cut(s)	1550, 1872
BstV1I	GCAGC	7 cut(s)	17, 47, 1087, 1138, 1566, 1624, 1680
BstV2I	GAAGAC	4 cut(s)	753, 891, 1275, 1731
BstX2I	RGATCY	3 cut(s)	719, 808, 1215
BstYI	RGATCY	3 cut(s)	719, 808, 1215
Bsu36I	CCTNAGG	1 cut(s)	907
BsuRI	GGCC	5 cut(s)	26, 60, 604, 1679, 1684
BtgI	CCRYGG	1 cut(s)	27
BtgZI	GCGATG	1 cut(s)	1461
BtrI	CACGTC	2 cut(s)	576, 834
BtsCI	GGATG	3 cut(s)	1158, 1471, 1717
BtsIMutI	CAGTG	2 cut(s)	78, 263
BtuMI	TCGCGA	1 cut(s)	1397
BveI	ACCTGC	1 cut(s)	1585
CaiI	CAGNNNCTG	2 cut(s)	1531, 1600
CfoI	GCGC	8 cut(s)	377, 514, 572, 1292, 1497, 1561, 1584, 1586
Cfr10I	RCCGGY	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	620
Cfr9I	CCCGGG	1 cut(s)	1937
CseI	GACGC	8 cut(s)	319, 707, 901, 1195, 1543, 1707, 1745, 1870
Csp6I	GTAC	2 cut(s)	406, 859
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviAII	CATG	7 cut(s)	66, 118, 738, 796, 1846, 1855, 1897
CviQI	GTAC	2 cut(s)	406, 859
DinI	GGCGCC	1 cut(s)	513
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	3 cut(s)	24, 602, 1677
Eam1104I	CTCTTC	6 cut(s)	779, 1007, 1052, 1430, 1650, 1755
EarI	CTCTTC	6 cut(s)	779, 1007, 1052, 1430, 1650, 1755
EciI	GGCGGA	6 cut(s)	536, 568, 723, 781, 1656, 1757
Ecl136II	GAGCTC	3 cut(s)	348, 488, 1017
Eco130I	CCWWGG	1 cut(s)	1104
Eco24I	GRGCYC	3 cut(s)	350, 490, 1019
Eco31I	GGTCTC	3 cut(s)	290, 977, 1442
Eco47I	GGWCC	1 cut(s)	620
Eco53kI	GAGCTC	3 cut(s)	348, 488, 1017
Eco72I	CACGTG	2 cut(s)	1781, 1803
Eco81I	CCTNAGG	1 cut(s)	907
Eco88I	CYCGRG	2 cut(s)	1162, 1937
EcoICRI	GAGCTC	3 cut(s)	348, 488, 1017
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	3 cut(s)	865, 1679, 2001
EcoT14I	CCWWGG	1 cut(s)	1104
EcoT22I	ATGCAT	1 cut(s)	846
EcoT38I	GRGCYC	3 cut(s)	350, 490, 1019
EgeI	GGCGCC	1 cut(s)	513
EheI	GGCGCC	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	1104
Esp3I	CGTCTC	2 cut(s)	824, 1178
FaeI	CATG	7 cut(s)	69, 121, 741, 799, 1849, 1858, 1900
FalI	AAGNNNNNCTT	2 cut(s)	1088, 1120
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	7 cut(s)	65, 117, 737, 795, 1845, 1854, 1896
FauI	CCCGC	6 cut(s)	575, 694, 1745, 1800, 1857, 1875
FbaI	TGATCA	2 cut(s)	177, 1411
FblI	GTMKAC	2 cut(s)	111, 234
FokI	GGATG	3 cut(s)	1145, 1458, 1724
FriOI	GRGCYC	3 cut(s)	350, 490, 1019
FspBI	CTAG	1 cut(s)	1877
GlaI	GCGC	8 cut(s)	376, 513, 571, 1291, 1496, 1560, 1583, 1585
GsuI	CTGGAG	5 cut(s)	825, 1003, 1559, 1601, 1876
HaeII	RGCGCY	1 cut(s)	515
HaeIII	GGCC	5 cut(s)	26, 60, 604, 1679, 1684
HapII	CCGG	9 cut(s)	285, 378, 605, 1260, 1376, 1638, 1670, 1938, 1975
HgaI	GACGC	8 cut(s)	319, 707, 901, 1195, 1543, 1707, 1745, 1870
HhaI	GCGC	8 cut(s)	377, 514, 572, 1292, 1497, 1561, 1584, 1586
Hin1I	GRCGYC	4 cut(s)	330, 512, 912, 1197
Hin1II	CATG	7 cut(s)	69, 121, 741, 799, 1849, 1858, 1900
Hin6I	GCGC	8 cut(s)	375, 512, 570, 1290, 1495, 1559, 1582, 1584
HinP1I	GCGC	8 cut(s)	375, 512, 570, 1290, 1495, 1559, 1582, 1584
HincII	GTYRAC	3 cut(s)	112, 1934, 1971
HindII	GTYRAC	3 cut(s)	112, 1934, 1971
HindIII	AAGCTT	1 cut(s)	164
HpaII	CCGG	9 cut(s)	285, 378, 605, 1260, 1376, 1638, 1670, 1938, 1975
HphI	GGTGA	3 cut(s)	623, 1828, 2054
Hpy166II	GTNNAC	6 cut(s)	112, 235, 1548, 1870, 1934, 1971
Hpy8I	GTNNAC	6 cut(s)	112, 235, 1548, 1870, 1934, 1971
HpyAV	CCTTC	6 cut(s)	133, 310, 903, 1035, 1163, 1495
HpyCH4III	ACNGT	6 cut(s)	649, 1280, 1436, 1949, 2029, 2070
HpyCH4IV	ACGT	8 cut(s)	231, 357, 370, 575, 833, 1197, 1780, 1802
HpySE526I	ACGT	8 cut(s)	231, 357, 370, 575, 833, 1197, 1780, 1802
Hsp92I	GRCGYC	4 cut(s)	330, 512, 912, 1197
Hsp92II	CATG	7 cut(s)	69, 121, 741, 799, 1849, 1858, 1900
HspAI	GCGC	8 cut(s)	375, 512, 570, 1290, 1495, 1559, 1582, 1584
KasI	GGCGCC	1 cut(s)	511
KflI	GGGWCCC	1 cut(s)	620
Ksp22I	TGATCA	2 cut(s)	177, 1411
LguI	GCTCTTC	2 cut(s)	1007, 1430
LmnI	GCTCC	7 cut(s)	56, 353, 1022, 1134, 1620, 1626, 1895
Lsp1109I	GCAGC	7 cut(s)	17, 47, 1087, 1138, 1566, 1624, 1680
LweI	GCATC	7 cut(s)	17, 831, 947, 1078, 1215, 1302, 1351
MaeI	CTAG	1 cut(s)	1877
MaeII	ACGT	8 cut(s)	231, 357, 370, 575, 833, 1197, 1780, 1802
MaeIII	GTNAC	3 cut(s)	366, 611, 1625
MbiI	CCGCTC	2 cut(s)	1213, 1882
MflI	RGATCY	3 cut(s)	719, 808, 1215
MhlI	GDGCHC	5 cut(s)	350, 490, 1019, 1550, 1872
MluCI	AATT	2 cut(s)	527, 870
Mly113I	GGCGCC	1 cut(s)	512
MlyI	GAGTC	5 cut(s)	485, 548, 970, 1030, 1682
MmeI	TCCRAC	4 cut(s)	378, 1300, 1821, 1937
Mph1103I	ATGCAT	1 cut(s)	846
MroXI	GAANNNNTTC	2 cut(s)	467, 892
MspA1I	CMGCKG	3 cut(s)	14, 38, 1579
MspI	CCGG	9 cut(s)	285, 378, 605, 1260, 1376, 1638, 1670, 1938, 1975
MspR9I	CCNGG	7 cut(s)	285, 867, 1681, 1938, 1939, 1975, 2003
Mva1269I	GAATGC	1 cut(s)	1892
MvaI	CCWGG	3 cut(s)	867, 1681, 2003
NarI	GGCGCC	1 cut(s)	512
NciI	CCSGG	4 cut(s)	285, 1938, 1939, 1975
NlaIII	CATG	7 cut(s)	69, 121, 741, 799, 1849, 1858, 1900
NlaIV	GGNNCC	6 cut(s)	292, 513, 621, 622, 1217, 1488
NmeAIII	GCCGAG	2 cut(s)	1200, 1399
NmuCI	GTSAC	2 cut(s)	611, 1625
NruI	TCGCGA	1 cut(s)	1397
NsiI	ATGCAT	1 cut(s)	846
NspV	TTCGAA	1 cut(s)	428
PauI	GCGCGC	1 cut(s)	1582
PciSI	GCTCTTC	2 cut(s)	1007, 1430
PcsI	WCGNNNNNNNCGW	9 cut(s)	108, 111, 234, 237, 243, 1206, 1272, 1541, 1682
PctI	GAATGC	1 cut(s)	1892
PdmI	GAANNNNTTC	2 cut(s)	467, 892
PfeI	GAWTC	7 cut(s)	734, 883, 1041, 1263, 1366, 1825, 2012
PflFI	GACNNNGTC	3 cut(s)	98, 557, 752
PfoI	TCCNGGA	1 cut(s)	865
PleI	GAGTC	5 cut(s)	484, 548, 969, 1030, 1681
PluTI	GGCGCC	1 cut(s)	515
PmaCI	CACGTG	2 cut(s)	1781, 1803
PmlI	CACGTG	2 cut(s)	1781, 1803
PpsI	GAGTC	5 cut(s)	484, 548, 969, 1030, 1681
Ppu21I	YACGTR	2 cut(s)	1781, 1803
PpuMI	RGGWCCY	1 cut(s)	620
PshAI	GACNNNNGTC	1 cut(s)	1434
Psp124BI	GAGCTC	3 cut(s)	350, 490, 1019
Psp5II	RGGWCCY	1 cut(s)	620
Psp6I	CCWGG	3 cut(s)	865, 1679, 2001
PspCI	CACGTG	2 cut(s)	1781, 1803
PspGI	CCWGG	3 cut(s)	865, 1679, 2001
PspN4I	GGNNCC	6 cut(s)	292, 513, 621, 622, 1217, 1488
PspPI	GGNCC	1 cut(s)	620
PspPPI	RGGWCCY	1 cut(s)	620
PstNI	CAGNNNCTG	2 cut(s)	1531, 1600
PsuI	RGATCY	3 cut(s)	719, 808, 1215
PsyI	GACNNNGTC	3 cut(s)	98, 557, 752
PteI	GCGCGC	1 cut(s)	1582
PvuII	CAGCTG	1 cut(s)	38
RruI	TCGCGA	1 cut(s)	1397
RsaI	GTAC	2 cut(s)	407, 860
RsaNI	GTAC	2 cut(s)	406, 859
SacI	GAGCTC	3 cut(s)	350, 490, 1019
SalI	GTCGAC	1 cut(s)	110
SapI	GCTCTTC	2 cut(s)	1007, 1430
Sau96I	GGNCC	1 cut(s)	620
ScaI	AGTACT	1 cut(s)	407
SchI	GAGTC	5 cut(s)	485, 548, 970, 1030, 1682
ScrFI	CCNGG	7 cut(s)	285, 867, 1681, 1938, 1939, 1975, 2003
SduI	GDGCHC	5 cut(s)	350, 490, 1019, 1550, 1872
SfaNI	GCATC	7 cut(s)	17, 831, 947, 1078, 1215, 1302, 1351
SfcI	CTRYAG	1 cut(s)	1441
SfoI	GGCGCC	1 cut(s)	513
SfuI	TTCGAA	1 cut(s)	428
SinI	GGWCC	1 cut(s)	620
SmaI	CCCGGG	1 cut(s)	1939
SmlI	CTYRAG	2 cut(s)	491, 1463
SmoI	CTYRAG	2 cut(s)	491, 1463
Sse9I	AATT	2 cut(s)	527, 870
SspDI	GGCGCC	1 cut(s)	511
SspMI	CTAG	1 cut(s)	1877
SstI	GAGCTC	3 cut(s)	350, 490, 1019
StyD4I	CCNGG	7 cut(s)	283, 865, 1679, 1936, 1937, 1973, 2001
StyI	CCWWGG	1 cut(s)	1104
TaaI	ACNGT	6 cut(s)	649, 1280, 1436, 1949, 2029, 2070
TaiI	ACGT	8 cut(s)	234, 360, 373, 578, 836, 1200, 1783, 1805
TasI	AATT	2 cut(s)	527, 870
TatI	WGTACW	2 cut(s)	405, 858
TfiI	GAWTC	7 cut(s)	734, 883, 1041, 1263, 1366, 1825, 2012
TscAI	CASTG	2 cut(s)	85, 263
TseFI	GTSAC	2 cut(s)	611, 1625
TseI	GCWGC	7 cut(s)	5, 35, 1100, 1126, 1579, 1612, 1693
Tsp45I	GTSAC	2 cut(s)	611, 1625
TspDTI	ATGAA	3 cut(s)	726, 812, 1913
TspGWI	ACGGA	5 cut(s)	413, 547, 727, 1293, 1613
TspMI	CCCGGG	1 cut(s)	1937
TspRI	CASTG	2 cut(s)	85, 263
Tth111I	GACNNNGTC	3 cut(s)	98, 557, 752
VneI	GTGCAC	2 cut(s)	1546, 1868
VpaK11BI	GGWCC	1 cut(s)	620
XapI	RAATTY	1 cut(s)	870
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1003
XmaI	CCCGGG	1 cut(s)	1937
XmiI	GTMKAC	2 cut(s)	111, 234
XmnI	GAANNNNTTC	2 cut(s)	467, 892
XspI	CTAG	1 cut(s)	1877
ZraI	GACGTC	1 cut(s)	1198
ZrmI	AGTACT	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.