MD17G1080500.v1.1

proton-transporting ATP synthase activity, rotational mechanism

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0006120
Physical Location & Seq
Reverse (-)
6670798 .. 6672950
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1080500.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGCCACTGCAACTATATAAAGATTCAATCGGGTTTCGACTGCTCAGACTACACAGTTATACAGTATCTCCTTGGAAGTTCTGCTGGTTCCTTCGTGATGAAGATATAATGGTGTACATAGAAGAGCACCAAGAAATTTTTCTGAGTGCCATGTATAATGTATACAGGGCAACTGATGTGACCTTTACAGGAGAAAGTCAGCTTGAGGATGTTAAAAAATTCTGTAAAAGAATACTAGAAAAGGATACATTAAAAGATTCTAAGAATTTGCACGACCAGATTAAACATGAAATTAGTATTCCATGGCTTGCTCGGTTGGATCATCTGGAGCACAGGAAGTTCATTGAGATGAAAGAGCCTGTTGGTCCATGGATAGGAAAAGGCTTATCCTGCAGGTGGTCAAAAGACATCGGTCTTGTTGACATGGGGTTTGCTCGACAGAAAACCGCGTACTGTTATTTTGCCGTTGCTTCAACAGCATCACATTCTTCCCTGTCATATGTACGGCTCGCGGTTGTGAAAGCTGCAGTCCTTGTTACAGTTGCTGATGATTTTTTTGACAAGGAAGGTTCGATGAATGACTTGGAGGCTCTTGCCAATGCCGTCGCGAGATGGCAGGAAAAAGAACTGGATGGACATGGAAAAGCTATATTCAAGGCTCTAAAAGATTTTGTTGATGACATTTCTTGGCAATTCTTCAAACAAAATGGATATGATATAAAGAGTTATCTTCAGGACCTATGGCATCAAACATTTGTAAGCTGGTTAAAGGAAGCAGAATGGAGCAGAAATGGGCATCTCTTGTCAATTGTTGAGTACCTCCAAGTAGCCAAAAGCTCTATTGCTTCACATACTATTCTTCTTACAGCTGCTCTTCTGCTTAATACACCTCCAAAATCAGAGACCCTCAAGTCCCCTCAAAGTCATCCACTTACAAATTCACTTATGCTTTTGACACGGCTATTGAACGAAATTCAAAGCTATCAGGTATATGAGGAGAAATTTTTAATAAGGAGCAAGAGGAGGGGAAGCCAAACCTTGTTCTGCTACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000275 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005754 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0008324 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015078 GO:0015318 GO:0015399 GO:0015405 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016462 GO:0016469 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019829 GO:0019866 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033178 GO:0034220 GO:0034641 GO:0034654 GO:0042221 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044769 GO:0045259 GO:0045261 GO:0045267 GO:0046034 GO:0046390 GO:0046483 GO:0046689 GO:0046933 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0099131 GO:0099132 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko00904 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map00195 map00904 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_ab ATP-synt_ab_N FliG_C FliG_M FliG_N FliH Photo_RC

Protein Analysis

352

Amino Acids

40.77

Weight (kDa)

7.68

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 5 - 97 2.5e-15 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 135 - 330 2.3e-44 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 175 - 329 1.7e-29 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 384
AasI GACNNNNNNGTC 1 cut(s) 910
Acc36I ACCTGC 1 cut(s) 384
AccI GTMKAC 1 cut(s) 162
AccII CGCG 3 cut(s) 449, 512, 608
AciI CCGC 2 cut(s) 447, 512
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 6 cut(s) 135, 218, 265, 937, 972, 1001
AcuI CTGAAG 1 cut(s) 716
AfaI GTAC 4 cut(s) 116, 452, 504, 818
AfiI CCNNNNNNNGG 2 cut(s) 374, 396
AgsI TTSAA 6 cut(s) 27, 474, 655, 700, 967, 977
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 7 cut(s) 202, 524, 647, 762, 837, 869, 981
AluI AGCT 7 cut(s) 202, 524, 647, 762, 837, 869, 981
Alw21I GWGCWC 2 cut(s) 129, 333
Alw26I GTCTC 1 cut(s) 896
AlwI GGATC 1 cut(s) 327
AlwNI CAGNNNCTG 1 cut(s) 545
ApeKI GCWGC 2 cut(s) 524, 869
ApoI RAATTY 6 cut(s) 135, 218, 265, 937, 972, 1001
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
Asp700I GAANNNNTTC 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 365, 736
AvaII GGWCC 2 cut(s) 365, 736
Bbv12I GWGCWC 2 cut(s) 129, 333
BbvI GCAGC 2 cut(s) 511, 856
BccI CCATC 2 cut(s) 606, 626
BceAI ACGGC 4 cut(s) 449, 521, 587, 974
BciVI GTATCC 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 896
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 2 cut(s) 391, 525
BfuAI ACCTGC 1 cut(s) 384
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 2 cut(s) 525, 870
BlsI GCNGC 2 cut(s) 526, 871
Bme18I GGWCC 2 cut(s) 365, 736
BmgT120I GGNCC 2 cut(s) 365, 736
BmiI GGNNCC 1 cut(s) 89
BmsI GCATC 3 cut(s) 488, 754, 805
BoxI GACNNNNGTC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 347
BpuEI CTTGAG 2 cut(s) 224, 893
BsaI GGTCTC 1 cut(s) 896
BsaJI CCNNGG 3 cut(s) 71, 302, 368
BsaXI ACNNNNNCTCC 2 cut(s) 52, 82
Bsc4I CCNNNNNNNGG 2 cut(s) 374, 396
Bse1I ACTGG 1 cut(s) 633
BseDI CCNNGG 3 cut(s) 71, 302, 368
BseGI GGATG 3 cut(s) 214, 637, 925
BseLI CCNNNNNNNGG 2 cut(s) 374, 396
BseMII CTCAG 2 cut(s) 58, 134
BseNI ACTGG 1 cut(s) 633
BseRI GAGGAG 2 cut(s) 1010, 1036
BseXI GCAGC 2 cut(s) 511, 856
Bsh1236I CGCG 3 cut(s) 449, 512, 608
BsiHKAI GWGCWC 2 cut(s) 129, 333
BslFI GGGAC 1 cut(s) 898
BslI CCNNNNNNNGG 2 cut(s) 374, 396
BsmAI GTCTC 1 cut(s) 896
BsmFI GGGAC 1 cut(s) 898
Bso31I GGTCTC 1 cut(s) 896
Bsp1286I GDGCHC 2 cut(s) 129, 333
Bsp1407I TGTACA 1 cut(s) 114
Bsp143I GATC 1 cut(s) 319
Bsp19I CCATGG 2 cut(s) 302, 368
Bsp68I TCGCGA 1 cut(s) 608
BspACI CCGC 2 cut(s) 447, 512
BspCNI CTCAG 2 cut(s) 57, 135
BspFNI CGCG 3 cut(s) 449, 512, 608
BspLI GGNNCC 1 cut(s) 89
BspMAI CTGCAG 2 cut(s) 395, 529
BspMI ACCTGC 1 cut(s) 384
BspPI GGATC 1 cut(s) 327
BspQI GCTCTTC 2 cut(s) 117, 879
BspTNI GGTCTC 1 cut(s) 896
BsrGI TGTACA 1 cut(s) 114
BsrI ACTGG 1 cut(s) 633
BssECI CCNNGG 3 cut(s) 71, 302, 368
BssMI GATC 1 cut(s) 319
BssNAI GTATAC 1 cut(s) 163
BssT1I CCWWGG 3 cut(s) 71, 302, 368
Bst1107I GTATAC 1 cut(s) 163
Bst4CI ACNGT 4 cut(s) 56, 64, 455, 541
Bst6I CTCTTC 2 cut(s) 117, 879
BstAUI TGTACA 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 309, 510
BstDEI CTNAG 3 cut(s) 44, 143, 261
BstDSI CCRYGG 2 cut(s) 302, 368
BstF5I GGATG 3 cut(s) 214, 637, 925
BstFNI CGCG 3 cut(s) 449, 512, 608
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 1 cut(s) 896
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 390, 476
BstPAI GACNNNNGTC 1 cut(s) 411
BstSFI CTRYAG 2 cut(s) 391, 525
BstUI CGCG 3 cut(s) 449, 512, 608
BstV1I GCAGC 2 cut(s) 511, 856
BstZ17I GTATAC 1 cut(s) 163
BsuI GTATCC 1 cut(s) 238
BtgI CCRYGG 2 cut(s) 302, 368
BtsCI GGATG 3 cut(s) 214, 637, 925
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 5
BtuMI TCGCGA 1 cut(s) 608
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 2 cut(s) 309, 510
CaiI CAGNNNCTG 1 cut(s) 545
Cfr13I GGNCC 2 cut(s) 365, 736
Csp6I GTAC 4 cut(s) 115, 451, 503, 817
CviAII CATG 7 cut(s) 151, 287, 303, 369, 424, 638, 1053
CviQI GTAC 4 cut(s) 115, 451, 503, 817
DdeI CTNAG 3 cut(s) 44, 143, 261
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
DrdI GACNNNNNNGTC 1 cut(s) 910
DseDI GACNNNNNNGTC 1 cut(s) 910
Eam1104I CTCTTC 2 cut(s) 117, 879
EarI CTCTTC 2 cut(s) 117, 879
Eco130I CCWWGG 3 cut(s) 71, 302, 368
Eco31I GGTCTC 1 cut(s) 896
Eco47I GGWCC 2 cut(s) 365, 736
Eco57I CTGAAG 1 cut(s) 716
EcoO109I RGGNCCY 1 cut(s) 736
EcoT14I CCWWGG 3 cut(s) 71, 302, 368
ErhI CCWWGG 3 cut(s) 71, 302, 368
FaeI CATG 7 cut(s) 154, 290, 306, 372, 427, 641, 1056
FaqI GGGAC 1 cut(s) 898
FatI CATG 7 cut(s) 150, 286, 302, 368, 423, 637, 1052
FauNDI CATATG 1 cut(s) 499
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 525, 870
FokI GGATG 3 cut(s) 221, 644, 912
Fsp4HI GCNGC 2 cut(s) 525, 870
FspBI CTAG 1 cut(s) 236
GluI GCNGC 2 cut(s) 525, 870
GsuI CTGGAG 1 cut(s) 347
Hin1II CATG 7 cut(s) 154, 290, 306, 372, 427, 641, 1056
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 2 cut(s) 23, 257
Hpy166II GTNNAC 3 cut(s) 115, 163, 421
Hpy188I TCNGA 3 cut(s) 47, 144, 901
Hpy188III TCNNGA 4 cut(s) 95, 326, 607, 734
Hpy8I GTNNAC 3 cut(s) 115, 163, 421
Hpy99I CGWCG 1 cut(s) 608
HpyAV CCTTC 2 cut(s) 101, 560
HpyCH4III ACNGT 4 cut(s) 56, 64, 455, 541
HpyCH4V TGCA 4 cut(s) 10, 271, 393, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 390, 476
HpyF3I CTNAG 3 cut(s) 44, 143, 261
Hsp92II CATG 7 cut(s) 154, 290, 306, 372, 427, 641, 1056
Kzo9I GATC 1 cut(s) 319
LguI GCTCTTC 2 cut(s) 117, 879
LmnI GCTCC 3 cut(s) 328, 783, 1014
Lsp1109I GCAGC 2 cut(s) 511, 856
LweI GCATC 3 cut(s) 488, 754, 805
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 178, 535
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 7 cut(s) 113, 134, 480, 688, 722, 851, 866
MfeI CAATTG 1 cut(s) 807
MhlI GDGCHC 2 cut(s) 129, 333
MluCI AATT 9 cut(s) 135, 218, 265, 291, 692, 807, 937, 972, 1001
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 9 cut(s) 199, 580, 830, 900, 917, 927, 988, 1014, 1017
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 6 cut(s) 213, 251, 282, 767, 882, 1007
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 869
MunI CAATTG 1 cut(s) 807
MvnI CGCG 3 cut(s) 449, 512, 608
MwoI GCNNNNNNNGC 2 cut(s) 390, 476
NcoI CCATGG 2 cut(s) 302, 368
NdeI CATATG 1 cut(s) 499
NdeII GATC 1 cut(s) 319
NlaIII CATG 7 cut(s) 154, 290, 306, 372, 427, 641, 1056
NlaIV GGNNCC 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 178
NruI TCGCGA 1 cut(s) 608
PaqCI CACCTGC 1 cut(s) 384
PciSI GCTCTTC 2 cut(s) 117, 879
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 23, 257
PkrI GCNGC 2 cut(s) 526, 871
PpuMI RGGWCCY 1 cut(s) 736
PshAI GACNNNNGTC 1 cut(s) 411
Psp5II RGGWCCY 1 cut(s) 736
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 2 cut(s) 365, 736
PspPPI RGGWCCY 1 cut(s) 736
PstI CTGCAG 2 cut(s) 395, 529
PstNI CAGNNNCTG 1 cut(s) 545
PvuII CAGCTG 1 cut(s) 869
RruI TCGCGA 1 cut(s) 608
RsaI GTAC 4 cut(s) 116, 452, 504, 818
RsaNI GTAC 4 cut(s) 115, 451, 503, 817
RseI CAYNNNNRTG 1 cut(s) 347
SapI GCTCTTC 2 cut(s) 117, 879
SaqAI TTAA 6 cut(s) 213, 251, 282, 767, 882, 1007
SatI GCNGC 2 cut(s) 525, 870
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 2 cut(s) 365, 736
SbfI CCTGCAGG 1 cut(s) 395
SdaI CCTGCAGG 1 cut(s) 395
SduI GDGCHC 2 cut(s) 129, 333
SfaNI GCATC 3 cut(s) 488, 754, 805
SfcI CTRYAG 2 cut(s) 391, 525
SinI GGWCC 2 cut(s) 365, 736
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 203, 908
SmoI CTYRAG 2 cut(s) 203, 908
Sse8387I CCTGCAGG 1 cut(s) 395
Sse9I AATT 9 cut(s) 135, 218, 265, 291, 692, 807, 937, 972, 1001
SsiI CCGC 2 cut(s) 447, 512
SspMI CTAG 1 cut(s) 236
StyI CCWWGG 3 cut(s) 71, 302, 368
TaaI ACNGT 4 cut(s) 56, 64, 455, 541
TaqI TCGA 3 cut(s) 37, 436, 572
TaqII GACCGA 1 cut(s) 401
TasI AATT 9 cut(s) 135, 218, 265, 291, 692, 807, 937, 972, 1001
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 2 cut(s) 23, 257
Tru1I TTAA 6 cut(s) 213, 251, 282, 767, 882, 1007
Tru9I TTAA 6 cut(s) 213, 251, 282, 767, 882, 1007
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 2 cut(s) 524, 869
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 5 cut(s) 114, 303, 331, 365, 590
TspRI CASTG 1 cut(s) 12
VpaK11BI GGWCC 2 cut(s) 365, 736
XapI RAATTY 6 cut(s) 135, 218, 265, 937, 972, 1001
XmiI GTMKAC 1 cut(s) 162
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.