Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006120

Physical Location & Seq

Genomic Coordinates Reverse (-)

10089076 .. 10093058

Gene Structure 3983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00088060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTTCCGAATCCTCAAAAACCAGATCGGCCCTTGTTCCGGGGATGCTTGCATTGGGTGCTCCGAAACCAAAAACCGGGAGGCTTCGGGGATCATCGAGTCGGCCGCCATAAGTACCTTAGGTCGGGACAGGCGTACTATGAAACACTGTTGCCATATCTTGAAGCTTTGCCGGAGACTTGTAATGAGATTTTGCTACAACAGAGTGAAGATTATGGGCTCGTCATCCAGTCCCCATCAGCCACCCGCCTATGCTTTTATGAAGACAGAAATAAGAAGTTTTTGGCCAATTTGAAGTCTGTTGTCCAAAGATGTGGATATGGAGGTGTCATGCCATTTCCTGCGATTTACCCCATAGATGAAGACCTCGTGAAGGTTTGTCTTATTGACCTGATTGAGACACTGGGCCTGGCAGAGTATTTCATGGACGAGATAACCACTCTACTTGATCAAGTTTTCAGAAGTTATGTGAACAATGAAGGGACAGAGATGACGGTGAAGCATGGTCTGCTTCCACTAGAACTTTATAGAGATTCACTGGCATTTCGACTACTGAGACTACATCGCTATACTGTATCTCCTTGGAAGTTCTGCTGGTTCCTCCAAGATGAAGATATATTGATGCACCTAGCTAGAAGAGCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0001101 GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006979 GO:0007584 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031667 GO:0042221 GO:0042493 GO:0043207 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0080013 GO:0080027 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00904 map00904

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

215

Amino Acids

25.06

Weight (kDa)

6.59

Isoelectric Point (pI)

61.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth	PF01397	98 - 205	3.7e-18	Terpene synthase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61120
malus_domestica	MD17G1080300.v1.1 MD17G1080400.v1.1 MD17G1080500.v1.1 MD17G1080700.v1.1 MD17G1080800.v1.1
prunus_persica	Prupe.3G234300_v2.0.a1 Prupe.3G234400_v2.0.a1 Prupe.3G234400_v2.0.a1 Prupe.3G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162311
rosa_laevigata	RLG00000021334 RLG00000021337
rosa_multiflora	Rmu_co8462281.1_g000001 Rmu_sc0004020.1_g000013
rosa_roxburghii	Rroxscaffold_2G00088040 Rroxscaffold_2G00088060 Rroxscaffold_2G00088110
rosa_rugosa	Rorug02G0496200 Rorug02G0496300
rosa_samantha	Rh2AG562300 Rh2AG562400 Rh2BG575400 Rh2CG545800 Rh2DG585200 Rh2DG585600
rosa_wichuraiana	Rw2G046570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	106, 247
AclWI	GGATC	1 cut(s)	99
AcoI	YGGCCR	2 cut(s)	103, 285
AfaI	GTAC	2 cut(s)	116, 137
AfiI	CCNNNNNNNGG	4 cut(s)	39, 76, 124, 373
AgsI	TTSAA	2 cut(s)	164, 295
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	2 cut(s)	167, 632
AluI	AGCT	2 cut(s)	167, 632
Alw21I	GWGCWC	2 cut(s)	63, 643
Alw26I	GTCTC	3 cut(s)	170, 392, 550
AlwI	GGATC	1 cut(s)	99
AoxI	GGCC	4 cut(s)	29, 103, 285, 406
AspS9I	GGNCC	2 cut(s)	30, 406
AsuC2I	CCSGG	2 cut(s)	41, 78
AsuHPI	GGTGA	1 cut(s)	508
AxyI	CCTNAGG	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	2 cut(s)	270, 369
Bbv12I	GWGCWC	2 cut(s)	63, 643
BccI	CCATC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	410
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	2 cut(s)	41, 78
BcoDI	GTCTC	3 cut(s)	170, 392, 550
BfaI	CTAG	3 cut(s)	518, 629, 633
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	3 cut(s)	41, 78, 410
BmgT120I	GGNCC	2 cut(s)	30, 406
BmiI	GGNNCC	2 cut(s)	6, 599
BmrFI	CCNGG	3 cut(s)	41, 78, 410
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	2 cut(s)	35, 612
BmuI	ACTGGG	1 cut(s)	413
BpiI	GAAGAC	2 cut(s)	270, 369
BpuMI	CCSGG	2 cut(s)	41, 78
BsaJI	CCNNGG	2 cut(s)	40, 581
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 76, 124, 373
Bse1I	ACTGG	3 cut(s)	229, 408, 543
Bse21I	CCTNAGG	1 cut(s)	119
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	2 cut(s)	40, 581
BseGI	GGATG	2 cut(s)	50, 225
BseLI	CCNNNNNNNGG	4 cut(s)	39, 76, 124, 373
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	3 cut(s)	229, 408, 543
BseX3I	CGGCCG	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	4 cut(s)	31, 105, 287, 408
BsiEI	CGRYCG	1 cut(s)	106
BsiHKAI	GWGCWC	2 cut(s)	63, 643
BsiSI	CCGG	3 cut(s)	40, 77, 173
BslFI	GGGAC	3 cut(s)	141, 217, 496
BslI	CCNNNNNNNGG	4 cut(s)	39, 76, 124, 373
BsmAI	GTCTC	3 cut(s)	170, 392, 550
BsmFI	GGGAC	3 cut(s)	141, 217, 496
BsnI	GGCC	4 cut(s)	31, 105, 287, 408
Bsp1286I	GDGCHC	3 cut(s)	63, 222, 643
Bsp143I	GATC	3 cut(s)	25, 91, 448
BspACI	CCGC	2 cut(s)	106, 247
BspANI	GGCC	4 cut(s)	31, 105, 287, 408
BspCNI	CTCAG	1 cut(s)	546
BspLI	GGNNCC	2 cut(s)	6, 599
BspPI	GGATC	1 cut(s)	99
BspQI	GCTCTTC	1 cut(s)	631
BsrI	ACTGG	3 cut(s)	229, 408, 543
BssECI	CCNNGG	2 cut(s)	40, 581
BssMI	GATC	3 cut(s)	25, 91, 448
BssSI	CACGAG	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	581
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	150, 496, 574
Bst6I	CTCTTC	1 cut(s)	631
BstAPI	GCANNNNNTGC	2 cut(s)	58, 508
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	119, 554
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	50, 225
BstKTI	GATC	3 cut(s)	28, 94, 451
BstMAI	GTCTC	3 cut(s)	170, 392, 550
BstMBI	GATC	3 cut(s)	25, 91, 448
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 508, 638
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	3 cut(s)	39, 76, 408
BstV2I	GAAGAC	2 cut(s)	270, 369
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstZI	CGGCCG	1 cut(s)	103
Bsu36I	CCTNAGG	1 cut(s)	119
BsuRI	GGCC	4 cut(s)	31, 105, 287, 408
BtgZI	GCGATG	1 cut(s)	548
BtsCI	GGATG	2 cut(s)	50, 225
BtsIMutI	CAGTG	3 cut(s)	146, 401, 536
Cac8I	GCNNGC	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	30, 406
Csp6I	GTAC	2 cut(s)	115, 136
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviAII	CATG	4 cut(s)	331, 424, 503, 645
CviJI	RGCY	9 cut(s)	31, 84, 105, 167, 220, 242, 287, 408, 632
CviKI_1	RGCY	9 cut(s)	31, 84, 105, 167, 220, 242, 287, 408, 632
CviQI	GTAC	2 cut(s)	115, 136
DdeI	CTNAG	2 cut(s)	119, 554
DpnI	GATC	3 cut(s)	27, 93, 450
DpnII	GATC	3 cut(s)	25, 91, 448
EaeI	YGGCCR	2 cut(s)	103, 285
EagI	CGGCCG	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	631
EarI	CTCTTC	1 cut(s)	631
EclXI	CGGCCG	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	581
Eco24I	GRGCYC	1 cut(s)	222
Eco52I	CGGCCG	1 cut(s)	103
Eco81I	CCTNAGG	1 cut(s)	119
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	581
FaeI	CATG	4 cut(s)	334, 427, 506, 648
FaqI	GGGAC	3 cut(s)	141, 217, 496
FatI	CATG	4 cut(s)	330, 423, 502, 644
FauI	CCCGC	1 cut(s)	254
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	2 cut(s)	57, 212
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	3 cut(s)	518, 629, 633
GluI	GCNGC	1 cut(s)	106
HaeIII	GGCC	4 cut(s)	31, 105, 287, 408
HapII	CCGG	3 cut(s)	40, 77, 173
Hin1II	CATG	4 cut(s)	334, 427, 506, 648
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	3 cut(s)	10, 99, 533
HpaII	CCGG	3 cut(s)	40, 77, 173
HphI	GGTGA	1 cut(s)	508
Hpy166II	GTNNAC	1 cut(s)	472
Hpy188I	TCNGA	3 cut(s)	9, 65, 461
Hpy188III	TCNNGA	3 cut(s)	126, 161, 370
Hpy8I	GTNNAC	1 cut(s)	472
HpyAV	CCTTC	2 cut(s)	367, 473
HpyCH4III	ACNGT	3 cut(s)	150, 496, 574
HpyCH4V	TGCA	2 cut(s)	52, 625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 508, 638
HpyF3I	CTNAG	2 cut(s)	119, 554
Hsp92II	CATG	4 cut(s)	334, 427, 506, 648
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	3 cut(s)	25, 91, 448
LguI	GCTCTTC	1 cut(s)	631
LmnI	GCTCC	1 cut(s)	66
LweI	GCATC	2 cut(s)	35, 612
MaeI	CTAG	3 cut(s)	518, 629, 633
MalI	GATC	3 cut(s)	27, 93, 450
MboI	GATC	3 cut(s)	25, 91, 448
MboII	GAAGA	5 cut(s)	221, 275, 374, 623, 648
MhlI	GDGCHC	3 cut(s)	63, 222, 643
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	289
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	24, 74, 317, 377, 611
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	287
MspI	CCGG	3 cut(s)	40, 77, 173
MspR9I	CCNGG	3 cut(s)	41, 78, 410
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	3 cut(s)	58, 508, 638
NciI	CCSGG	2 cut(s)	41, 78
NdeII	GATC	3 cut(s)	25, 91, 448
NlaIII	CATG	4 cut(s)	334, 427, 506, 648
NlaIV	GGNNCC	2 cut(s)	6, 599
PciSI	GCTCTTC	1 cut(s)	631
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	10, 533
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	2 cut(s)	6, 599
PspPI	GGNCC	2 cut(s)	30, 406
RsaI	GTAC	2 cut(s)	116, 137
RsaNI	GTAC	2 cut(s)	115, 136
SapI	GCTCTTC	1 cut(s)	631
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	3 cut(s)	25, 91, 448
Sau96I	GGNCC	2 cut(s)	30, 406
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	3 cut(s)	41, 78, 410
SduI	GDGCHC	3 cut(s)	63, 222, 643
SetI	ASST	9 cut(s)	120, 125, 169, 328, 369, 378, 393, 630, 634
SfaNI	GCATC	2 cut(s)	35, 612
Sse9I	AATT	1 cut(s)	289
SsiI	CCGC	2 cut(s)	106, 247
SspMI	CTAG	3 cut(s)	518, 629, 633
StyD4I	CCNGG	3 cut(s)	39, 76, 408
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	3 cut(s)	150, 496, 574
TaqI	TCGA	2 cut(s)	97, 547
TasI	AATT	1 cut(s)	289
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	2 cut(s)	10, 533
TscAI	CASTG	3 cut(s)	153, 408, 543
TspDTI	ATGAA	6 cut(s)	156, 276, 375, 412, 492, 624
TspRI	CASTG	3 cut(s)	153, 408, 543
XagI	CCTNNNNNAGG	1 cut(s)	371
XspI	CTAG	3 cut(s)	518, 629, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.