Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8462281.1

Orthogroup ID

OG0006120

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1864

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8462281.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1355 bp

attaagcatgaacttagtcatccatggcttgctcggttggatcatttggaacacaggaaatgcattgagagggaagatgctattcatccatggacaggaaaagccttttcgtatagactatcattttcgagtgatgctctgctgcaacaacttgccatagagaattattcactcagacaatcaatattcagagatgaactaaccgagttagagaggtggtcaaaggacatgggactttgtgacatggggtttgcacgacagaaaaccgcacactgttattttgcagttgcatcaactgtatcacctccttccctttcggatgtgaggctggcacttgtcaaaagtgcaatccttgttacggtggctgatgatttttttgatgcggaaggttcattgagtgatctcaaaagttttacaaatgccgtcaaaagacgtcagcagataggcctgaatggacacagcaaaactatatttaaagctctcaaggatctcctcgatgacatttctatgcaattcttcaataaatatggatatgacgtaaacatataccttcaagatctagaggcagagtggagcagtactgggcataccccatcaatagctgagtaccttcaagtagccacgagttcaatagctgcacaaactattattcttccagcagctcttcttcttagtccacaacccggaatagacatcctcaagtgccctcaaaatgagccgcttacaaatttacttatggtttcaacacgctttttgaacgatattggaacctataagaaaaaaatcactgatgccccggatgcattaatattccagcgggaacaagaggaggggaagccaaaccttgttctgctacacatgaaggaaaatccggatctgggagttgaagaatcaattgaggttatacagaagatattggacgaaaagaagaaacagttcctggaacaggttttggtgaatggagtgaatgatatgccagaagcatgtaaactactccactttcaatgcctgaaagcatttcagatgttctacaactcaacaaatgcatttgactcccaaacagagttgcttgctgacatcaacaaagcgatttattttccattaaaggtggatgatagaagtttggctagtagccatagccaagttggtactaaaagccttcaaatccaacagagagtaattggaacaagttcaacattctcgaagagcattactgagaacagaacttgtactactggtgctataaagttcctccaaggaaagaagttttctgcaaagccttacgcggggatcttatcacttaagatgagaaaatcaataactcctacgactttcccaaagccgaaagcttgtac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0001101 GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006979 GO:0007584 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031667 GO:0042221 GO:0042493 GO:0043207 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0080013 GO:0080027 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00904 map00904

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

452

Amino Acids

50.84

Weight (kDa)

7.7

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61120
malus_domestica	MD17G1080300.v1.1 MD17G1080400.v1.1 MD17G1080500.v1.1 MD17G1080700.v1.1 MD17G1080800.v1.1
prunus_persica	Prupe.3G234300_v2.0.a1 Prupe.3G234400_v2.0.a1 Prupe.3G234400_v2.0.a1 Prupe.3G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162311
rosa_laevigata	RLG00000021334 RLG00000021337
rosa_multiflora	Rmu_co8462281.1_g000001 Rmu_sc0004020.1_g000013
rosa_roxburghii	Rroxscaffold_2G00088040 Rroxscaffold_2G00088060 Rroxscaffold_2G00088110
rosa_rugosa	Rorug02G0496200 Rorug02G0496300
rosa_samantha	Rh2AG562300 Rh2AG562400 Rh2BG575400 Rh2CG545800 Rh2DG585200 Rh2DG585600
rosa_wichuraiana	Rw2G046570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	436
AccII	CGCG	1 cut(s)	1286
AccIII	TCCGGA	1 cut(s)	871
AciI	CCGC	5 cut(s)	267, 383, 719, 817, 1286
AclWI	GGATC	4 cut(s)	48, 495, 882, 1298
AcsI	RAATTY	1 cut(s)	727
AcyI	GRCGYC	1 cut(s)	433
AfaI	GTAC	5 cut(s)	580, 608, 1150, 1231, 1354
AfiI	CCNNNNNNNGG	6 cut(s)	95, 358, 683, 878, 946, 1286
AflII	CTTAAG	1 cut(s)	1301
AjnI	CCWGG	1 cut(s)	939
AluBI	AGCT	5 cut(s)	479, 602, 635, 662, 1349
AluI	AGCT	5 cut(s)	479, 602, 635, 662, 1349
AlwI	GGATC	4 cut(s)	48, 495, 882, 1298
AlwNI	CAGNNNCTG	1 cut(s)	940
Aor13HI	TCCGGA	1 cut(s)	871
AoxI	GGCC	1 cut(s)	445
ApeKI	GCWGC	3 cut(s)	142, 635, 659
ApoI	RAATTY	1 cut(s)	727
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AseI	ATTAAT	1 cut(s)	806
Asp700I	GAANNNNTTC	2 cut(s)	935, 1189
AsuC2I	CCSGG	2 cut(s)	684, 797
AsuHPI	GGTGA	2 cut(s)	294, 967
BaeGI	GKGCMC	1 cut(s)	707
BauI	CACGAG	1 cut(s)	622
BbvI	GCAGC	3 cut(s)	129, 622, 671
BccI	CCATC	1 cut(s)	601
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	1 cut(s)	941
BcnI	CCSGG	2 cut(s)	684, 797
BfaI	CTAG	2 cut(s)	560, 1128
BfrI	CTTAAG	1 cut(s)	1301
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	4 cut(s)	143, 636, 660, 719
BlsI	GCNGC	4 cut(s)	144, 637, 661, 720
BmcAI	AGTACT	1 cut(s)	580
Bme1390I	CCNGG	3 cut(s)	684, 797, 941
BmiI	GGNNCC	1 cut(s)	769
BmrFI	CCNGG	3 cut(s)	684, 797, 941
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	6 cut(s)	67, 124, 299, 370, 781, 790
BmuI	ACTGGG	1 cut(s)	591
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BpuEI	CTTGAG	2 cut(s)	467, 683
BpuMI	CCSGG	2 cut(s)	684, 797
BsaHI	GRCGYC	1 cut(s)	433
BsaJI	CCNNGG	4 cut(s)	23, 89, 795, 1255
BsaWI	WCCGGW	1 cut(s)	871
Bsc4I	CCNNNNNNNGG	6 cut(s)	95, 358, 683, 878, 946, 1286
Bse1I	ACTGG	2 cut(s)	586, 1240
BseAI	TCCGGA	1 cut(s)	871
BseBI	CCWGG	1 cut(s)	941
BseDI	CCNNGG	4 cut(s)	23, 89, 795, 1255
BseGI	GGATG	6 cut(s)	19, 85, 325, 693, 805, 1117
BseLI	CCNNNNNNNGG	6 cut(s)	95, 358, 683, 878, 946, 1286
BseMII	CTCAG	3 cut(s)	187, 594, 1206
BseNI	ACTGG	2 cut(s)	586, 1240
BseRI	GAGGAG	2 cut(s)	482, 842
BseSI	GKGCMC	1 cut(s)	707
BseXI	GCAGC	3 cut(s)	129, 622, 671
BsgI	GTGCAG	1 cut(s)	621
Bsh1236I	CGCG	1 cut(s)	1286
BshFI	GGCC	1 cut(s)	447
BsiSI	CCGG	3 cut(s)	684, 797, 872
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	6 cut(s)	95, 358, 683, 878, 946, 1286
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	707
Bsp13I	TCCGGA	1 cut(s)	871
Bsp143I	GATC	6 cut(s)	40, 400, 487, 556, 874, 1290
Bsp19I	CCATGG	2 cut(s)	23, 89
BspACI	CCGC	5 cut(s)	267, 383, 719, 817, 1286
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	3 cut(s)	186, 595, 1207
BspEI	TCCGGA	1 cut(s)	871
BspFNI	CGCG	1 cut(s)	1286
BspLI	GGNNCC	1 cut(s)	769
BspPI	GGATC	4 cut(s)	48, 495, 882, 1298
BspQI	GCTCTTC	2 cut(s)	669, 1199
BspTI	CTTAAG	1 cut(s)	1301
BsrI	ACTGG	2 cut(s)	586, 1240
BssECI	CCNNGG	4 cut(s)	23, 89, 795, 1255
BssMI	GATC	6 cut(s)	40, 400, 487, 556, 874, 1290
BssNI	GRCGYC	1 cut(s)	433
BssSI	CACGAG	1 cut(s)	622
BssT1I	CCWWGG	3 cut(s)	23, 89, 1255
Bst2BI	CACGAG	1 cut(s)	622
Bst2UI	CCWGG	1 cut(s)	941
Bst4CI	ACNGT	4 cut(s)	275, 298, 361, 936
Bst6I	CTCTTC	2 cut(s)	669, 1199
BstACI	GRCGYC	1 cut(s)	433
BstAFI	CTTAAG	1 cut(s)	1301
BstC8I	GCNNGC	3 cut(s)	30, 330, 1071
BstDEI	CTNAG	5 cut(s)	14, 173, 603, 671, 1215
BstDSI	CCRYGG	2 cut(s)	23, 89
BstENI	CCTNNNNNAGG	1 cut(s)	944
BstF5I	GGATG	6 cut(s)	19, 85, 325, 693, 805, 1117
BstFNI	CGCG	1 cut(s)	1286
BstKTI	GATC	6 cut(s)	43, 403, 490, 559, 877, 1293
BstMBI	GATC	6 cut(s)	40, 400, 487, 556, 874, 1290
BstMWI	GCNNNNNNNGC	1 cut(s)	800
BstNI	CCWGG	1 cut(s)	941
BstNSI	RCATGY	1 cut(s)	987
BstSCI	CCNGG	3 cut(s)	682, 795, 939
BstSLI	GKGCMC	1 cut(s)	707
BstUI	CGCG	1 cut(s)	1286
BstV1I	GCAGC	3 cut(s)	129, 622, 671
BstX2I	RGATCY	4 cut(s)	487, 556, 874, 1290
BstYI	RGATCY	4 cut(s)	487, 556, 874, 1290
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	2 cut(s)	23, 89
BtsCI	GGATG	6 cut(s)	19, 85, 325, 693, 805, 1117
BtsIMutI	CAGTG	2 cut(s)	271, 786
Cac8I	GCNNGC	3 cut(s)	30, 330, 1071
CaiI	CAGNNNCTG	1 cut(s)	940
Csp6I	GTAC	5 cut(s)	579, 607, 1149, 1230, 1353
CviAII	CATG	7 cut(s)	8, 24, 90, 229, 244, 859, 984
CviQI	GTAC	5 cut(s)	579, 607, 1149, 1230, 1353
DdeI	CTNAG	5 cut(s)	14, 173, 603, 671, 1215
DpnI	GATC	6 cut(s)	42, 402, 489, 558, 876, 1292
DpnII	GATC	6 cut(s)	40, 400, 487, 556, 874, 1290
DraI	TTTAAA	1 cut(s)	475
Eam1104I	CTCTTC	2 cut(s)	669, 1199
EarI	CTCTTC	2 cut(s)	669, 1199
Eco130I	CCWWGG	3 cut(s)	23, 89, 1255
Eco147I	AGGCCT	1 cut(s)	447
EcoNI	CCTNNNNNAGG	1 cut(s)	944
EcoRII	CCWGG	1 cut(s)	939
EcoT14I	CCWWGG	3 cut(s)	23, 89, 1255
EcoT22I	ATGCAT	3 cut(s)	65, 805, 1048
ErhI	CCWWGG	3 cut(s)	23, 89, 1255
FaeI	CATG	7 cut(s)	11, 27, 93, 232, 247, 862, 987
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	7 cut(s)	7, 23, 89, 228, 243, 858, 983
FauI	CCCGC	2 cut(s)	810, 1279
Fnu4HI	GCNGC	4 cut(s)	143, 636, 660, 719
FokI	GGATG	6 cut(s)	6, 72, 332, 680, 812, 1124
Fsp4HI	GCNGC	4 cut(s)	143, 636, 660, 719
FspBI	CTAG	2 cut(s)	560, 1128
GluI	GCNGC	4 cut(s)	143, 636, 660, 719
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	3 cut(s)	684, 797, 872
Hin1I	GRCGYC	1 cut(s)	433
Hin1II	CATG	7 cut(s)	11, 27, 93, 232, 247, 862, 987
HindIII	AAGCTT	1 cut(s)	1347
HinfI	GANTC	2 cut(s)	890, 1052
HpaII	CCGG	3 cut(s)	684, 797, 872
HphI	GGTGA	2 cut(s)	294, 967
Hpy166II	GTNNAC	3 cut(s)	541, 677, 989
Hpy188I	TCNGA	4 cut(s)	176, 191, 319, 1023
Hpy188III	TCNNGA	4 cut(s)	554, 560, 872, 1201
Hpy8I	GTNNAC	3 cut(s)	541, 677, 989
HpyAV	CCTTC	6 cut(s)	318, 380, 560, 620, 856, 1169
HpyCH4III	ACNGT	4 cut(s)	275, 298, 361, 936
HpyCH4IV	ACGT	2 cut(s)	433, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	800
HpyF3I	CTNAG	5 cut(s)	14, 173, 603, 671, 1215
HpySE526I	ACGT	2 cut(s)	433, 537
Hsp92I	GRCGYC	1 cut(s)	433
Hsp92II	CATG	7 cut(s)	11, 27, 93, 232, 247, 862, 987
Kpn2I	TCCGGA	1 cut(s)	871
Kzo9I	GATC	6 cut(s)	40, 400, 487, 556, 874, 1290
LguI	GCTCTTC	2 cut(s)	669, 1199
LmnI	GCTCC	1 cut(s)	573
Lsp1109I	GCAGC	3 cut(s)	129, 622, 671
LweI	GCATC	6 cut(s)	67, 124, 299, 370, 781, 790
MaeI	CTAG	2 cut(s)	560, 1128
MaeII	ACGT	2 cut(s)	433, 537
MaeIII	GTNAC	2 cut(s)	239, 355
MalI	GATC	6 cut(s)	42, 402, 489, 558, 876, 1292
MboI	GATC	6 cut(s)	40, 400, 487, 556, 874, 1290
MboII	GAAGA	9 cut(s)	86, 508, 644, 656, 659, 899, 922, 940, 1216
MfeI	CAATTG	1 cut(s)	894
MflI	RGATCY	4 cut(s)	487, 556, 874, 1290
MhlI	GDGCHC	1 cut(s)	707
MluCI	AATT	5 cut(s)	163, 512, 727, 894, 1179
MlyI	GAGTC	1 cut(s)	1046
MmeI	TCCRAC	2 cut(s)	18, 1192
Mph1103I	ATGCAT	3 cut(s)	65, 805, 1048
MroI	TCCGGA	1 cut(s)	871
MroXI	GAANNNNTTC	2 cut(s)	935, 1189
MseI	TTAA	5 cut(s)	3, 474, 806, 1103, 1302
MslI	CAYNNNNRTG	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	817
MspCI	CTTAAG	1 cut(s)	1301
MspI	CCGG	3 cut(s)	684, 797, 872
MspR9I	CCNGG	3 cut(s)	684, 797, 941
MunI	CAATTG	1 cut(s)	894
MvaI	CCWGG	1 cut(s)	941
MvnI	CGCG	1 cut(s)	1286
MwoI	GCNNNNNNNGC	1 cut(s)	800
NciI	CCSGG	2 cut(s)	684, 797
NcoI	CCATGG	2 cut(s)	23, 89
NdeII	GATC	6 cut(s)	40, 400, 487, 556, 874, 1290
NlaIII	CATG	7 cut(s)	11, 27, 93, 232, 247, 862, 987
NlaIV	GGNNCC	1 cut(s)	769
NmuCI	GTSAC	1 cut(s)	239
NsiI	ATGCAT	3 cut(s)	65, 805, 1048
NspI	RCATGY	1 cut(s)	987
PceI	AGGCCT	1 cut(s)	447
PciSI	GCTCTTC	2 cut(s)	669, 1199
PdmI	GAANNNNTTC	2 cut(s)	935, 1189
PfeI	GAWTC	1 cut(s)	890
PfoI	TCCNGGA	1 cut(s)	939
PkrI	GCNGC	4 cut(s)	144, 637, 661, 720
PleI	GAGTC	1 cut(s)	1046
PpsI	GAGTC	1 cut(s)	1046
PshBI	ATTAAT	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	939
PspGI	CCWGG	1 cut(s)	939
PspN4I	GGNNCC	1 cut(s)	769
PsrI	GAACNNNNNNTAC	2 cut(s)	1216, 1248
PstNI	CAGNNNCTG	1 cut(s)	940
PsuI	RGATCY	4 cut(s)	487, 556, 874, 1290
RsaI	GTAC	5 cut(s)	580, 608, 1150, 1231, 1354
RsaNI	GTAC	5 cut(s)	579, 607, 1149, 1230, 1353
RseI	CAYNNNNRTG	1 cut(s)	506
SapI	GCTCTTC	2 cut(s)	669, 1199
SaqAI	TTAA	5 cut(s)	3, 474, 806, 1103, 1302
SatI	GCNGC	4 cut(s)	143, 636, 660, 719
Sau3AI	GATC	6 cut(s)	40, 400, 487, 556, 874, 1290
ScaI	AGTACT	1 cut(s)	580
SchI	GAGTC	1 cut(s)	1046
ScrFI	CCNGG	3 cut(s)	684, 797, 941
SduI	GDGCHC	1 cut(s)	707
SfaNI	GCATC	6 cut(s)	67, 124, 299, 370, 781, 790
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	3 cut(s)	482, 698, 1301
SmoI	CTYRAG	3 cut(s)	482, 698, 1301
Sse9I	AATT	5 cut(s)	163, 512, 727, 894, 1179
SseBI	AGGCCT	1 cut(s)	447
SsiI	CCGC	5 cut(s)	267, 383, 719, 817, 1286
SspI	AATATT	2 cut(s)	186, 810
SspMI	CTAG	2 cut(s)	560, 1128
StuI	AGGCCT	1 cut(s)	447
StyD4I	CCNGG	3 cut(s)	682, 795, 939
StyI	CCWWGG	3 cut(s)	23, 89, 1255
TaaI	ACNGT	4 cut(s)	275, 298, 361, 936
TaiI	ACGT	2 cut(s)	436, 540
TaqI	TCGA	3 cut(s)	128, 495, 1202
TasI	AATT	5 cut(s)	163, 512, 727, 894, 1179
TatI	WGTACW	2 cut(s)	578, 1229
TauI	GCSGC	1 cut(s)	721
TfiI	GAWTC	1 cut(s)	890
Tru1I	TTAA	5 cut(s)	3, 474, 806, 1103, 1302
Tru9I	TTAA	5 cut(s)	3, 474, 806, 1103, 1302
TscAI	CASTG	2 cut(s)	278, 793
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	3 cut(s)	142, 635, 659
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	5 cut(s)	24, 74, 210, 381, 875
TspRI	CASTG	2 cut(s)	278, 793
Vha464I	CTTAAG	1 cut(s)	1301
VspI	ATTAAT	1 cut(s)	806
XagI	CCTNNNNNAGG	1 cut(s)	944
XapI	RAATTY	1 cut(s)	727
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	1 cut(s)	987
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1142
XmnI	GAANNNNTTC	2 cut(s)	935, 1189
XspI	CTAG	2 cut(s)	560, 1128
ZraI	GACGTC	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	580
Zsp2I	ATGCAT	3 cut(s)	65, 805, 1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.