Rh2DG585600

Belongs to the terpene synthase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
81682648 .. 81696576
13929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG585600.1

Sequence Viewer

Length: 1413 bp
ATGGACGAGATAGCCACTCTACTTGATCAAGTTTTCAGAAGTTATGTGAACAATGAAGGGACAGAGATGACGGTGAAGCGTCTGCTTCCACTAGAACTTTATAGAGATTCACTGGCATTTCGACTACTGAGACTACATCGCTATACTGTATCTCCTTGGAAGTTCTGCTGGTTCCTCCAAGATGAAGATATATTGGCGCACATTGAAGAGCACCATGAAACATTTTTGAGTGCCATGTATCATGTATACAGGGCATCAGATCTCACTTTTGCCGGAGATAGTCAGCTTGAAGATGCTAGGTTATTCTCTACAAGAATACTGGAAAAAGAAACAACAAATTCTGAGAAATTGCTGGTAGACCAGATTAAGCATGAACTTAGTCATCCATGGCTCGCTCGGTTGGATCATCTAGAACACAGGAAATGCACTGAGAGGAAAGATACTATTCATCCATGGACAGGAAAAGCCTTTTCGTATAGACGTCAGCAGATAGGCCTGAATGGACACAGCAAAACTATATTTAAAGCTCTCAAGGATCTCCTCGATGACATTTCTATGCAATTCTTCAATAAATATGGATATGACGTAAACATATACCTTCAAGATCTATGGCATCAAACATTTGTGAAATGGTTAAAGGAGACAGAGTGGAGCAGTACTGGGCATACCCCATCAATAGCTGAGTACCTTCAAGTAGCCACGAGTTTAATAGCTGCACAAACTATTATTCTTCCAGCAGCTCTTCTTCTTAGTCCACAACCCGGAATAGACATCCTCAAGTGCCCTCAAAATGAGCCGCTTACAAATTTACTTATGGTTTCAACACGCTTTTTGAACGATATTGGAACCTATGAGCGGGAACAAGAGGAGGGGAAGCCAAACCTTGTTCTGCTACACATGAAGGAAAATCCGGATCTGGGAGTTGAAGAATCAATTGAGGTTATACAGAAGATATTGGACGAAAAGAAGAAACAGTTCCTGGAACAGGTTTTGGTGAATGGAGTGAATGATATGCCAGAAGCATGTAAACTACTCCACTTTCAATGCCTGAAAGCATTTCAGATGTTCTACAACTCAACAAATGCATTTGACTCCCAAACAGAGTTGCTTGCTGACATCAACAAAGCGATTTATTTTCCATTAAAGGTGGATCATAGAAGTTTGGCTAGTAGCCATAGCCAAGTTGGTACTAAAAGCCTTCAAATCCAACAGAGAGTAATTGGAACAAGTTCAACATTCTCGAAGAGCATTACTGAGAACAGAACTTGTACTACTGGTGCTATAAAGTTCCTCCAAGGAAAGAAGTTATCTGCAAAGCCTTACGCAGGGATCTTATCACTTAAGATGAGAAAATCAATAACTCCTACGACTTTCCCAAAGCCGAAAGCTTGTACTTATTCGTGGCATAAGTAA

Protein Analysis

470

Amino Acids

54.25

Weight (kDa)

7.29

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 2 - 126 6e-20 Terpene synthase, N-terminal domain
Terpene_synth_C PF03936 166 - 324 7.4e-28 Terpene synthase family, metal binding domain
Terpene_syn_C_2 PF19086 166 - 324 2.3e-25 Terpene synthase family 2, C-terminal metal binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 484
AccBSI CCGCTC 1 cut(s) 856
AccI GTMKAC 2 cut(s) 246, 357
AccIII TCCGGA 1 cut(s) 910
AciI CCGC 2 cut(s) 797, 856
AclWI GGATC 5 cut(s) 411, 543, 921, 1158, 1337
AcsI RAATTY 2 cut(s) 337, 805
AcyI GRCGYC 1 cut(s) 481
AfaI GTAC 5 cut(s) 658, 686, 1189, 1270, 1393
AfiI CCNNNNNNNGG 6 cut(s) 458, 761, 855, 917, 985, 1325
AflII CTTAAG 1 cut(s) 1340
AjnI CCWGG 1 cut(s) 978
AluBI AGCT 6 cut(s) 286, 527, 680, 713, 740, 1388
AluI AGCT 6 cut(s) 286, 527, 680, 713, 740, 1388
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 2 cut(s) 124, 635
AlwI GGATC 5 cut(s) 411, 543, 921, 1158, 1337
AlwNI CAGNNNCTG 1 cut(s) 979
Aor13HI TCCGGA 1 cut(s) 910
AoxI GGCC 1 cut(s) 493
ApeKI GCWGC 2 cut(s) 713, 737
ApoI RAATTY 2 cut(s) 337, 805
Asp700I GAANNNNTTC 2 cut(s) 974, 1228
AspLEI GCGC 1 cut(s) 199
AsuC2I CCSGG 1 cut(s) 762
AsuHPI GGTGA 2 cut(s) 85, 1006
BaeGI GKGCMC 1 cut(s) 785
BauI CACGAG 1 cut(s) 700
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 700, 749
BccI CCATC 1 cut(s) 679
BciT130I CCWGG 1 cut(s) 980
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 762
BcoDI GTCTC 2 cut(s) 124, 635
BfaI CTAG 4 cut(s) 92, 297, 410, 1167
BfrI CTTAAG 1 cut(s) 1340
BglII AGATCT 2 cut(s) 259, 604
BisI GCNGC 3 cut(s) 714, 738, 797
BlsI GCNGC 3 cut(s) 715, 739, 798
BmcAI AGTACT 1 cut(s) 658
Bme1390I CCNGG 2 cut(s) 762, 980
BmiI GGNNCC 2 cut(s) 173, 847
BmrFI CCNGG 2 cut(s) 762, 980
BmrI ACTGGG 1 cut(s) 669
BmsI GCATC 3 cut(s) 263, 283, 622
BmuI ACTGGG 1 cut(s) 669
BpuEI CTTGAG 2 cut(s) 515, 761
BpuMI CCSGG 1 cut(s) 762
BsaHI GRCGYC 1 cut(s) 481
BsaJI CCNNGG 4 cut(s) 155, 386, 452, 1294
BsaWI WCCGGW 1 cut(s) 910
BsaXI ACNNNNNCTCC 4 cut(s) 136, 166, 632, 662
Bsc4I CCNNNNNNNGG 6 cut(s) 458, 761, 855, 917, 985, 1325
Bse1I ACTGG 4 cut(s) 117, 324, 664, 1279
BseAI TCCGGA 1 cut(s) 910
BseBI CCWGG 1 cut(s) 980
BseDI CCNNGG 4 cut(s) 155, 386, 452, 1294
BseGI GGATG 3 cut(s) 382, 448, 771
BseLI CCNNNNNNNGG 6 cut(s) 458, 761, 855, 917, 985, 1325
BseMII CTCAG 5 cut(s) 119, 333, 420, 672, 1245
BseNI ACTGG 4 cut(s) 117, 324, 664, 1279
BseRI GAGGAG 2 cut(s) 530, 881
BseSI GKGCMC 1 cut(s) 785
BseXI GCAGC 2 cut(s) 700, 749
BsgI GTGCAG 1 cut(s) 699
BshFI GGCC 1 cut(s) 495
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 3 cut(s) 273, 762, 911
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 6 cut(s) 458, 761, 855, 917, 985, 1325
BsmAI GTCTC 2 cut(s) 124, 635
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 1 cut(s) 495
Bsp1286I GDGCHC 2 cut(s) 213, 785
Bsp13I TCCGGA 1 cut(s) 910
Bsp143I GATC 8 cut(s) 25, 259, 403, 535, 604, 913, 1150, 1329
Bsp19I CCATGG 2 cut(s) 386, 452
BspACI CCGC 2 cut(s) 797, 856
BspANI GGCC 1 cut(s) 495
BspCNI CTCAG 5 cut(s) 120, 334, 421, 673, 1246
BspEI TCCGGA 1 cut(s) 910
BspLI GGNNCC 2 cut(s) 173, 847
BspPI GGATC 5 cut(s) 411, 543, 921, 1158, 1337
BspQI GCTCTTC 3 cut(s) 201, 747, 1238
BspTI CTTAAG 1 cut(s) 1340
BsrBI CCGCTC 1 cut(s) 856
BsrI ACTGG 4 cut(s) 117, 324, 664, 1279
BssECI CCNNGG 4 cut(s) 155, 386, 452, 1294
BssMI GATC 8 cut(s) 25, 259, 403, 535, 604, 913, 1150, 1329
BssNAI GTATAC 1 cut(s) 247
BssNI GRCGYC 1 cut(s) 481
BssSI CACGAG 1 cut(s) 700
BssT1I CCWWGG 4 cut(s) 155, 386, 452, 1294
Bst1107I GTATAC 1 cut(s) 247
Bst2BI CACGAG 1 cut(s) 700
Bst2UI CCWGG 1 cut(s) 980
Bst4CI ACNGT 3 cut(s) 73, 148, 975
Bst6I CTCTTC 3 cut(s) 201, 747, 1238
BstACI GRCGYC 1 cut(s) 481
BstAFI CTTAAG 1 cut(s) 1340
BstC8I GCNNGC 2 cut(s) 393, 1110
BstDEI CTNAG 7 cut(s) 128, 342, 377, 429, 681, 749, 1254
BstDSI CCRYGG 2 cut(s) 386, 452
BstENI CCTNNNNNAGG 2 cut(s) 983, 1323
BstF5I GGATG 3 cut(s) 382, 448, 771
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 8 cut(s) 28, 262, 406, 538, 607, 916, 1153, 1332
BstMAI GTCTC 2 cut(s) 124, 635
BstMBI GATC 8 cut(s) 25, 259, 403, 535, 604, 913, 1150, 1329
BstNI CCWGG 1 cut(s) 980
BstNSI RCATGY 1 cut(s) 1026
BstSCI CCNGG 2 cut(s) 760, 978
BstSLI GKGCMC 1 cut(s) 785
BstV1I GCAGC 2 cut(s) 700, 749
BstX2I RGATCY 5 cut(s) 259, 535, 604, 913, 1329
BstYI RGATCY 5 cut(s) 259, 535, 604, 913, 1329
BstZ17I GTATAC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 495
BtgI CCRYGG 2 cut(s) 386, 452
BtgZI GCGATG 1 cut(s) 122
BtsCI GGATG 3 cut(s) 382, 448, 771
BtsIMutI CAGTG 2 cut(s) 110, 426
Cac8I GCNNGC 2 cut(s) 393, 1110
CaiI CAGNNNCTG 1 cut(s) 979
CfoI GCGC 1 cut(s) 199
CseI GACGC 1 cut(s) 68
Csp6I GTAC 5 cut(s) 657, 685, 1188, 1269, 1392
CspCI CAANNNNNGTGG 2 cut(s) 4, 39
CviAII CATG 8 cut(s) 215, 235, 242, 371, 387, 453, 898, 1023
CviQI GTAC 5 cut(s) 657, 685, 1188, 1269, 1392
DdeI CTNAG 7 cut(s) 128, 342, 377, 429, 681, 749, 1254
DpnI GATC 8 cut(s) 27, 261, 405, 537, 606, 915, 1152, 1331
DpnII GATC 8 cut(s) 25, 259, 403, 535, 604, 913, 1150, 1329
DraI TTTAAA 1 cut(s) 523
Eam1104I CTCTTC 3 cut(s) 201, 747, 1238
EarI CTCTTC 3 cut(s) 201, 747, 1238
Eco130I CCWWGG 4 cut(s) 155, 386, 452, 1294
Eco147I AGGCCT 1 cut(s) 495
EcoNI CCTNNNNNAGG 2 cut(s) 983, 1323
EcoRII CCWGG 1 cut(s) 978
EcoT14I CCWWGG 4 cut(s) 155, 386, 452, 1294
EcoT22I ATGCAT 1 cut(s) 1087
ErhI CCWWGG 4 cut(s) 155, 386, 452, 1294
FaeI CATG 8 cut(s) 218, 238, 245, 374, 390, 456, 901, 1026
FaqI GGGAC 1 cut(s) 73
FatI CATG 8 cut(s) 214, 234, 241, 370, 386, 452, 897, 1022
FauI CCCGC 1 cut(s) 849
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 2 cut(s) 246, 357
Fnu4HI GCNGC 3 cut(s) 714, 738, 797
FokI GGATG 3 cut(s) 369, 435, 758
Fsp4HI GCNGC 3 cut(s) 714, 738, 797
FspBI CTAG 4 cut(s) 92, 297, 410, 1167
GlaI GCGC 1 cut(s) 198
GluI GCNGC 3 cut(s) 714, 738, 797
HaeIII GGCC 1 cut(s) 495
HapII CCGG 3 cut(s) 273, 762, 911
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 481
Hin1II CATG 8 cut(s) 218, 238, 245, 374, 390, 456, 901, 1026
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 1386
HinfI GANTC 3 cut(s) 107, 929, 1091
HpaII CCGG 3 cut(s) 273, 762, 911
HphI GGTGA 2 cut(s) 85, 1006
Hpy166II GTNNAC 6 cut(s) 49, 247, 358, 589, 755, 1028
Hpy188I TCNGA 4 cut(s) 38, 259, 343, 1062
Hpy188III TCNNGA 4 cut(s) 410, 602, 911, 1240
Hpy8I GTNNAC 6 cut(s) 49, 247, 358, 589, 755, 1028
HpyAV CCTTC 5 cut(s) 50, 608, 698, 895, 1208
HpyCH4III ACNGT 3 cut(s) 73, 148, 975
HpyCH4IV ACGT 2 cut(s) 481, 585
HpyCH4V TGCA 5 cut(s) 426, 559, 716, 1085, 1313
HpyF3I CTNAG 7 cut(s) 128, 342, 377, 429, 681, 749, 1254
HpySE526I ACGT 2 cut(s) 481, 585
Hsp92I GRCGYC 1 cut(s) 481
Hsp92II CATG 8 cut(s) 218, 238, 245, 374, 390, 456, 901, 1026
HspAI GCGC 1 cut(s) 197
Kpn2I TCCGGA 1 cut(s) 910
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 8 cut(s) 25, 259, 403, 535, 604, 913, 1150, 1329
LguI GCTCTTC 3 cut(s) 201, 747, 1238
LmnI GCTCC 1 cut(s) 651
Lsp1109I GCAGC 2 cut(s) 700, 749
LweI GCATC 3 cut(s) 263, 283, 622
MaeI CTAG 4 cut(s) 92, 297, 410, 1167
MaeII ACGT 2 cut(s) 481, 585
MalI GATC 8 cut(s) 27, 261, 405, 537, 606, 915, 1152, 1331
MbiI CCGCTC 1 cut(s) 856
MboI GATC 8 cut(s) 25, 259, 403, 535, 604, 913, 1150, 1329
MfeI CAATTG 1 cut(s) 933
MflI RGATCY 5 cut(s) 259, 535, 604, 913, 1329
MhlI GDGCHC 2 cut(s) 213, 785
MluCI AATT 6 cut(s) 337, 347, 560, 805, 933, 1218
MlyI GAGTC 1 cut(s) 1085
MmeI TCCRAC 2 cut(s) 381, 1231
MnlI CCTC 9 cut(s) 185, 426, 551, 785, 795, 859, 862, 931, 1301
Mph1103I ATGCAT 1 cut(s) 1087
MroI TCCGGA 1 cut(s) 910
MroXI GAANNNNTTC 2 cut(s) 974, 1228
MseI TTAA 6 cut(s) 366, 522, 635, 707, 1142, 1341
MslI CAYNNNNRTG 1 cut(s) 554
MspCI CTTAAG 1 cut(s) 1340
MspI CCGG 3 cut(s) 273, 762, 911
MspR9I CCNGG 2 cut(s) 762, 980
MunI CAATTG 1 cut(s) 933
MvaI CCWGG 1 cut(s) 980
NciI CCSGG 1 cut(s) 762
NcoI CCATGG 2 cut(s) 386, 452
NdeII GATC 8 cut(s) 25, 259, 403, 535, 604, 913, 1150, 1329
NlaIII CATG 8 cut(s) 218, 238, 245, 374, 390, 456, 901, 1026
NlaIV GGNNCC 2 cut(s) 173, 847
NsiI ATGCAT 1 cut(s) 1087
NspI RCATGY 1 cut(s) 1026
PceI AGGCCT 1 cut(s) 495
PciSI GCTCTTC 3 cut(s) 201, 747, 1238
PdmI GAANNNNTTC 2 cut(s) 974, 1228
PfeI GAWTC 2 cut(s) 107, 929
PfoI TCCNGGA 1 cut(s) 978
PkrI GCNGC 3 cut(s) 715, 739, 798
PleI GAGTC 1 cut(s) 1085
PpsI GAGTC 1 cut(s) 1085
Psp6I CCWGG 1 cut(s) 978
PspGI CCWGG 1 cut(s) 978
PspN4I GGNNCC 2 cut(s) 173, 847
PsrI GAACNNNNNNTAC 2 cut(s) 1255, 1287
PstNI CAGNNNCTG 1 cut(s) 979
PsuI RGATCY 5 cut(s) 259, 535, 604, 913, 1329
RsaI GTAC 5 cut(s) 658, 686, 1189, 1270, 1393
RsaNI GTAC 5 cut(s) 657, 685, 1188, 1269, 1392
RseI CAYNNNNRTG 1 cut(s) 554
SapI GCTCTTC 3 cut(s) 201, 747, 1238
SaqAI TTAA 6 cut(s) 366, 522, 635, 707, 1142, 1341
SatI GCNGC 3 cut(s) 714, 738, 797
Sau3AI GATC 8 cut(s) 25, 259, 403, 535, 604, 913, 1150, 1329
ScaI AGTACT 1 cut(s) 658
SchI GAGTC 1 cut(s) 1085
ScrFI CCNGG 2 cut(s) 762, 980
SduI GDGCHC 2 cut(s) 213, 785
SfaNI GCATC 3 cut(s) 263, 283, 622
SmiMI CAYNNNNRTG 1 cut(s) 554
SmlI CTYRAG 3 cut(s) 530, 776, 1340
SmoI CTYRAG 3 cut(s) 530, 776, 1340
Sse9I AATT 6 cut(s) 337, 347, 560, 805, 933, 1218
SseBI AGGCCT 1 cut(s) 495
SsiI CCGC 2 cut(s) 797, 856
SspMI CTAG 4 cut(s) 92, 297, 410, 1167
StuI AGGCCT 1 cut(s) 495
StyD4I CCNGG 2 cut(s) 760, 978
StyI CCWWGG 4 cut(s) 155, 386, 452, 1294
TaaI ACNGT 3 cut(s) 73, 148, 975
TaiI ACGT 2 cut(s) 484, 588
TaqI TCGA 3 cut(s) 121, 543, 1241
TasI AATT 6 cut(s) 337, 347, 560, 805, 933, 1218
TatI WGTACW 3 cut(s) 656, 1268, 1391
TauI GCSGC 1 cut(s) 799
TfiI GAWTC 2 cut(s) 107, 929
Tru1I TTAA 6 cut(s) 366, 522, 635, 707, 1142, 1341
Tru9I TTAA 6 cut(s) 366, 522, 635, 707, 1142, 1341
TscAI CASTG 2 cut(s) 117, 433
TseI GCWGC 2 cut(s) 713, 737
TspDTI ATGAA 6 cut(s) 69, 198, 231, 387, 437, 914
TspRI CASTG 2 cut(s) 117, 433
Vha464I CTTAAG 1 cut(s) 1340
XagI CCTNNNNNAGG 2 cut(s) 983, 1323
XapI RAATTY 2 cut(s) 337, 805
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 1 cut(s) 1026
XcmI CCANNNNNNNNNTGG 1 cut(s) 1181
XmiI GTMKAC 2 cut(s) 246, 357
XmnI GAANNNNTTC 2 cut(s) 974, 1228
XspI CTAG 4 cut(s) 92, 297, 410, 1167
ZraI GACGTC 1 cut(s) 482
ZrmI AGTACT 1 cut(s) 658
Zsp2I ATGCAT 1 cut(s) 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.