Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006120

Physical Location & Seq

Genomic Coordinates Forward (+)

79188746 .. 79198336

Gene Structure 9591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG562400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGACGGTGAAGCATGGTCTGCTTCCACTAGAACTTTATAGAGATTCACTGGCATTTCGACTACTGAGACTACATCGCTATACTATTAAGCATGAACTTAGTCATCCATGGCTCGCTCGGTTGGATCATCTAGAACACAGGAAATGCATTGAGAGGGAAGATACTATTCATCCATGGACAGGAAAAGCCTTTTCGTATAGAGATGAACTAACCGAGTTACAGAGGTGGTCAAAGGACATGGGACTTTGTGACATGGGGTTTGCACGACAGAAAACCGCATACTGTTATTTTGCAGTTGAATCAACTGTATCATCTCCTTCCCTTTCGGATGTGAGGCTGGCACTTGTCAAAAGTGCAATCCTTGTTACGCTAGCTGATGATTTTTTTGATGCGGAAGGTTCATTGAGTGATCTCAAAAGTTTTACAAATGCCGTCAAAAGACGTCAGCAGATAGGCCTGAATGGACACAGCAAAACTATATTTAAAGCTCTCAAGGATCTCCTCGATGACATTTCTATGCAATTCTTCAATAAATATGGATATGACGTAAACATATACCTTCAAGATCTATGGCATCAAACATTTGTGAAATGGTTAAAGGAGGCAGAGTGGAGCAGTACTGGGCATACCCCATCAATAGCTGAGTACCTTCAAGTAGCCACGAGTTCAATAGCTGCACAAACTTTTATTCTTCCAGCAGCTCTTCTTCTTAGTCCACAACCCGGAATAGACATCCTCAAGTGCCCTCAAAATGAGCCGCTTACAAATTTACTTATGGTTTCAACACGCTTTTTGAACGATATTGGAACCTATGAGAAAAAAATCACTGATGCCCCGGATGCATTAATATTGCAGCGGGAACAAGAGGAAGGGAAGCCAAACCTTGTTCTGCTACACATGAAGGAAAATCCGGATCTGGGAGTTGAAGAATCAATTGAGGTTATACAGAAGATATTGGACGAAAAGAAGAAACAGTTCCTGGAACAGGTTTTGGTGAATGGAGTGAATGATATGCCAGAAGCATGTAAACTACTCCACTTTCAATGCCTGAAAGCATTTCAGATGTTCTACAACTCAACAAATGCATTTGACTCCCAAACAGAGTTGCTTGCTGACATCAACAAAGCGATTTATTTTCCATTAAAGGTGGATCATAGAAGTTTGGCTAGTAGCGATAGCCAAGTTGGTACTAAAAGCCTTCAAATCCAACAGAGAGTAATTGGAACAAGTTCAACATTCTCGAAGAGCATTACTGAGAACAGAACTTGTACTACTGGTGCTATAAAGTTCCTCCAAGGAAAGAAGTTTTCTGCAAAGCCTTACGCGGGGATCTTATCACTTAAGATGAGAAAATCAATAACTCCTACGACTTTCCCAAAGCCGAAAGCTTGTACTTATTCGTGGCATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0001101 GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006979 GO:0007584 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031667 GO:0042221 GO:0042493 GO:0043207 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0080013 GO:0080027 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00904 map00904

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

470

Amino Acids

53.52

Weight (kDa)

8.57

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	78 - 324	4.3e-46	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	118 - 324	7.1e-31	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61120
malus_domestica	MD17G1080300.v1.1 MD17G1080400.v1.1 MD17G1080500.v1.1 MD17G1080700.v1.1 MD17G1080800.v1.1
prunus_persica	Prupe.3G234300_v2.0.a1 Prupe.3G234400_v2.0.a1 Prupe.3G234400_v2.0.a1 Prupe.3G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162311
rosa_laevigata	RLG00000021334 RLG00000021337
rosa_multiflora	Rmu_co8462281.1_g000001 Rmu_sc0004020.1_g000013
rosa_roxburghii	Rroxscaffold_2G00088040 Rroxscaffold_2G00088060 Rroxscaffold_2G00088110
rosa_rugosa	Rorug02G0496200 Rorug02G0496300
rosa_samantha	Rh2AG562300 Rh2AG562400 Rh2BG575400 Rh2CG545800 Rh2DG585200 Rh2DG585600
rosa_wichuraiana	Rw2G046570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	445
AccII	CGCG	1 cut(s)	1325
AccIII	TCCGGA	1 cut(s)	910
AciI	CCGC	5 cut(s)	276, 392, 758, 856, 1325
AclWI	GGATC	5 cut(s)	132, 504, 921, 1158, 1337
AcsI	RAATTY	1 cut(s)	766
AcyI	GRCGYC	1 cut(s)	442
AfaI	GTAC	5 cut(s)	619, 647, 1189, 1270, 1393
AfiI	CCNNNNNNNGG	5 cut(s)	179, 722, 917, 985, 1325
AflII	CTTAAG	1 cut(s)	1340
AjnI	CCWGG	1 cut(s)	978
AluBI	AGCT	6 cut(s)	374, 488, 641, 674, 701, 1388
AluI	AGCT	6 cut(s)	374, 488, 641, 674, 701, 1388
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	5 cut(s)	132, 504, 921, 1158, 1337
AlwNI	CAGNNNCTG	1 cut(s)	979
Aor13HI	TCCGGA	1 cut(s)	910
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	3 cut(s)	674, 698, 853
ApoI	RAATTY	1 cut(s)	766
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AseI	ATTAAT	1 cut(s)	845
Asp700I	GAANNNNTTC	2 cut(s)	974, 1228
AsuC2I	CCSGG	2 cut(s)	723, 836
AsuHPI	GGTGA	2 cut(s)	19, 1006
AsuNHI	GCTAGC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	746
BauI	CACGAG	1 cut(s)	661
BbvI	GCAGC	3 cut(s)	661, 710, 865
BccI	CCATC	1 cut(s)	640
BceAI	ACGGC	1 cut(s)	416
BciT130I	CCWGG	1 cut(s)	980
BcnI	CCSGG	2 cut(s)	723, 836
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	4 cut(s)	29, 131, 371, 1167
BfrI	CTTAAG	1 cut(s)	1340
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	4 cut(s)	675, 699, 758, 854
BlsI	GCNGC	4 cut(s)	676, 700, 759, 855
BmcAI	AGTACT	1 cut(s)	619
Bme1390I	CCNGG	3 cut(s)	723, 836, 980
BmiI	GGNNCC	1 cut(s)	808
BmrFI	CCNGG	3 cut(s)	723, 836, 980
BmrI	ACTGGG	1 cut(s)	630
BmsI	GCATC	4 cut(s)	379, 583, 820, 829
BmtI	GCTAGC	1 cut(s)	374
BmuI	ACTGGG	1 cut(s)	630
BpuEI	CTTGAG	2 cut(s)	476, 722
BpuMI	CCSGG	2 cut(s)	723, 836
BsaHI	GRCGYC	1 cut(s)	442
BsaJI	CCNNGG	4 cut(s)	107, 173, 834, 1294
BsaWI	WCCGGW	1 cut(s)	910
BsaXI	ACNNNNNCTCC	2 cut(s)	593, 623
Bsc4I	CCNNNNNNNGG	5 cut(s)	179, 722, 917, 985, 1325
Bse1I	ACTGG	3 cut(s)	54, 625, 1279
BseAI	TCCGGA	1 cut(s)	910
BseBI	CCWGG	1 cut(s)	980
BseDI	CCNNGG	4 cut(s)	107, 173, 834, 1294
BseGI	GGATG	5 cut(s)	103, 169, 334, 732, 844
BseLI	CCNNNNNNNGG	5 cut(s)	179, 722, 917, 985, 1325
BseMII	CTCAG	3 cut(s)	56, 633, 1245
BseNI	ACTGG	3 cut(s)	54, 625, 1279
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	1 cut(s)	746
BseXI	GCAGC	3 cut(s)	661, 710, 865
BsgI	GTGCAG	1 cut(s)	660
Bsh1236I	CGCG	1 cut(s)	1325
BshFI	GGCC	1 cut(s)	456
BsiSI	CCGG	3 cut(s)	723, 836, 911
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	5 cut(s)	179, 722, 917, 985, 1325
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	746
Bsp13I	TCCGGA	1 cut(s)	910
Bsp143I	GATC	7 cut(s)	124, 409, 496, 565, 913, 1150, 1329
Bsp19I	CCATGG	2 cut(s)	107, 173
BspACI	CCGC	5 cut(s)	276, 392, 758, 856, 1325
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	3 cut(s)	57, 634, 1246
BspEI	TCCGGA	1 cut(s)	910
BspFNI	CGCG	1 cut(s)	1325
BspLI	GGNNCC	1 cut(s)	808
BspOI	GCTAGC	1 cut(s)	374
BspPI	GGATC	5 cut(s)	132, 504, 921, 1158, 1337
BspQI	GCTCTTC	2 cut(s)	708, 1238
BspTI	CTTAAG	1 cut(s)	1340
BsrI	ACTGG	3 cut(s)	54, 625, 1279
BssECI	CCNNGG	4 cut(s)	107, 173, 834, 1294
BssMI	GATC	7 cut(s)	124, 409, 496, 565, 913, 1150, 1329
BssNI	GRCGYC	1 cut(s)	442
BssSI	CACGAG	1 cut(s)	661
BssT1I	CCWWGG	3 cut(s)	107, 173, 1294
Bst2BI	CACGAG	1 cut(s)	661
Bst2UI	CCWGG	1 cut(s)	980
Bst4CI	ACNGT	4 cut(s)	7, 284, 307, 975
Bst6I	CTCTTC	2 cut(s)	708, 1238
BstACI	GRCGYC	1 cut(s)	442
BstAFI	CTTAAG	1 cut(s)	1340
BstAPI	GCANNNNNTGC	1 cut(s)	19
BstC8I	GCNNGC	4 cut(s)	114, 339, 372, 1110
BstDEI	CTNAG	5 cut(s)	65, 98, 642, 710, 1254
BstDSI	CCRYGG	2 cut(s)	107, 173
BstENI	CCTNNNNNAGG	1 cut(s)	983
BstF5I	GGATG	5 cut(s)	103, 169, 334, 732, 844
BstFNI	CGCG	1 cut(s)	1325
BstKTI	GATC	7 cut(s)	127, 412, 499, 568, 916, 1153, 1332
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	7 cut(s)	124, 409, 496, 565, 913, 1150, 1329
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 839
BstNI	CCWGG	1 cut(s)	980
BstNSI	RCATGY	1 cut(s)	1026
BstSCI	CCNGG	3 cut(s)	721, 834, 978
BstSLI	GKGCMC	1 cut(s)	746
BstUI	CGCG	1 cut(s)	1325
BstV1I	GCAGC	3 cut(s)	661, 710, 865
BstX2I	RGATCY	4 cut(s)	496, 565, 913, 1329
BstYI	RGATCY	4 cut(s)	496, 565, 913, 1329
BsuRI	GGCC	1 cut(s)	456
BtgI	CCRYGG	2 cut(s)	107, 173
BtgZI	GCGATG	1 cut(s)	59
BtsCI	GGATG	5 cut(s)	103, 169, 334, 732, 844
BtsIMutI	CAGTG	2 cut(s)	47, 825
Cac8I	GCNNGC	4 cut(s)	114, 339, 372, 1110
CaiI	CAGNNNCTG	1 cut(s)	979
Csp6I	GTAC	5 cut(s)	618, 646, 1188, 1269, 1392
CviAII	CATG	8 cut(s)	14, 92, 108, 174, 238, 253, 898, 1023
CviQI	GTAC	5 cut(s)	618, 646, 1188, 1269, 1392
DdeI	CTNAG	5 cut(s)	65, 98, 642, 710, 1254
DpnI	GATC	7 cut(s)	126, 411, 498, 567, 915, 1152, 1331
DpnII	GATC	7 cut(s)	124, 409, 496, 565, 913, 1150, 1329
DraI	TTTAAA	1 cut(s)	484
Eam1104I	CTCTTC	2 cut(s)	708, 1238
EarI	CTCTTC	2 cut(s)	708, 1238
Eco130I	CCWWGG	3 cut(s)	107, 173, 1294
Eco147I	AGGCCT	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	983
EcoRII	CCWGG	1 cut(s)	978
EcoT14I	CCWWGG	3 cut(s)	107, 173, 1294
EcoT22I	ATGCAT	3 cut(s)	149, 844, 1087
ErhI	CCWWGG	3 cut(s)	107, 173, 1294
FaeI	CATG	8 cut(s)	17, 95, 111, 177, 241, 256, 901, 1026
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	8 cut(s)	13, 91, 107, 173, 237, 252, 897, 1022
FauI	CCCGC	2 cut(s)	849, 1318
Fnu4HI	GCNGC	4 cut(s)	675, 699, 758, 854
FokI	GGATG	5 cut(s)	90, 156, 341, 719, 851
Fsp4HI	GCNGC	4 cut(s)	675, 699, 758, 854
FspBI	CTAG	4 cut(s)	29, 131, 371, 1167
GluI	GCNGC	4 cut(s)	675, 699, 758, 854
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	3 cut(s)	723, 836, 911
Hin1I	GRCGYC	1 cut(s)	442
Hin1II	CATG	8 cut(s)	17, 95, 111, 177, 241, 256, 901, 1026
HindIII	AAGCTT	1 cut(s)	1386
HinfI	GANTC	4 cut(s)	44, 299, 929, 1091
HpaII	CCGG	3 cut(s)	723, 836, 911
HphI	GGTGA	2 cut(s)	19, 1006
Hpy166II	GTNNAC	3 cut(s)	550, 716, 1028
Hpy188I	TCNGA	2 cut(s)	328, 1062
Hpy188III	TCNNGA	4 cut(s)	131, 563, 911, 1240
Hpy8I	GTNNAC	3 cut(s)	550, 716, 1028
HpyAV	CCTTC	7 cut(s)	327, 389, 569, 659, 863, 895, 1208
HpyCH4III	ACNGT	4 cut(s)	7, 284, 307, 975
HpyCH4IV	ACGT	2 cut(s)	442, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 839
HpyF3I	CTNAG	5 cut(s)	65, 98, 642, 710, 1254
HpySE526I	ACGT	2 cut(s)	442, 546
Hsp92I	GRCGYC	1 cut(s)	442
Hsp92II	CATG	8 cut(s)	17, 95, 111, 177, 241, 256, 901, 1026
Kpn2I	TCCGGA	1 cut(s)	910
Kzo9I	GATC	7 cut(s)	124, 409, 496, 565, 913, 1150, 1329
LguI	GCTCTTC	2 cut(s)	708, 1238
LmnI	GCTCC	1 cut(s)	612
Lsp1109I	GCAGC	3 cut(s)	661, 710, 865
LweI	GCATC	4 cut(s)	379, 583, 820, 829
MaeI	CTAG	4 cut(s)	29, 131, 371, 1167
MaeII	ACGT	2 cut(s)	442, 546
MaeIII	GTNAC	3 cut(s)	216, 248, 364
MalI	GATC	7 cut(s)	126, 411, 498, 567, 915, 1152, 1331
MboI	GATC	7 cut(s)	124, 409, 496, 565, 913, 1150, 1329
MboII	GAAGA	9 cut(s)	170, 517, 683, 695, 698, 938, 961, 979, 1255
MfeI	CAATTG	1 cut(s)	933
MflI	RGATCY	4 cut(s)	496, 565, 913, 1329
MhlI	GDGCHC	1 cut(s)	746
MluCI	AATT	4 cut(s)	521, 766, 933, 1218
MlyI	GAGTC	1 cut(s)	1085
MmeI	TCCRAC	2 cut(s)	102, 1231
Mph1103I	ATGCAT	3 cut(s)	149, 844, 1087
MroI	TCCGGA	1 cut(s)	910
MroXI	GAANNNNTTC	2 cut(s)	974, 1228
MseI	TTAA	6 cut(s)	87, 483, 596, 845, 1142, 1341
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	1 cut(s)	856
MspCI	CTTAAG	1 cut(s)	1340
MspI	CCGG	3 cut(s)	723, 836, 911
MspR9I	CCNGG	3 cut(s)	723, 836, 980
MunI	CAATTG	1 cut(s)	933
MvaI	CCWGG	1 cut(s)	980
MvnI	CGCG	1 cut(s)	1325
MwoI	GCNNNNNNNGC	2 cut(s)	19, 839
NciI	CCSGG	2 cut(s)	723, 836
NcoI	CCATGG	2 cut(s)	107, 173
NdeII	GATC	7 cut(s)	124, 409, 496, 565, 913, 1150, 1329
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	8 cut(s)	17, 95, 111, 177, 241, 256, 901, 1026
NlaIV	GGNNCC	1 cut(s)	808
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	3 cut(s)	149, 844, 1087
NspI	RCATGY	1 cut(s)	1026
PceI	AGGCCT	1 cut(s)	456
PciSI	GCTCTTC	2 cut(s)	708, 1238
PdmI	GAANNNNTTC	2 cut(s)	974, 1228
PfeI	GAWTC	3 cut(s)	44, 299, 929
PfoI	TCCNGGA	1 cut(s)	978
PkrI	GCNGC	4 cut(s)	676, 700, 759, 855
PleI	GAGTC	1 cut(s)	1085
PpsI	GAGTC	1 cut(s)	1085
PshBI	ATTAAT	1 cut(s)	845
Psp6I	CCWGG	1 cut(s)	978
PspGI	CCWGG	1 cut(s)	978
PspN4I	GGNNCC	1 cut(s)	808
PsrI	GAACNNNNNNTAC	2 cut(s)	1255, 1287
PstNI	CAGNNNCTG	1 cut(s)	979
PsuI	RGATCY	4 cut(s)	496, 565, 913, 1329
RsaI	GTAC	5 cut(s)	619, 647, 1189, 1270, 1393
RsaNI	GTAC	5 cut(s)	618, 646, 1188, 1269, 1392
RseI	CAYNNNNRTG	1 cut(s)	515
SapI	GCTCTTC	2 cut(s)	708, 1238
SaqAI	TTAA	6 cut(s)	87, 483, 596, 845, 1142, 1341
SatI	GCNGC	4 cut(s)	675, 699, 758, 854
Sau3AI	GATC	7 cut(s)	124, 409, 496, 565, 913, 1150, 1329
ScaI	AGTACT	1 cut(s)	619
SchI	GAGTC	1 cut(s)	1085
ScrFI	CCNGG	3 cut(s)	723, 836, 980
SduI	GDGCHC	1 cut(s)	746
SfaNI	GCATC	4 cut(s)	379, 583, 820, 829
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	3 cut(s)	491, 737, 1340
SmoI	CTYRAG	3 cut(s)	491, 737, 1340
Sse9I	AATT	4 cut(s)	521, 766, 933, 1218
SseBI	AGGCCT	1 cut(s)	456
SsiI	CCGC	5 cut(s)	276, 392, 758, 856, 1325
SspI	AATATT	1 cut(s)	849
SspMI	CTAG	4 cut(s)	29, 131, 371, 1167
StuI	AGGCCT	1 cut(s)	456
StyD4I	CCNGG	3 cut(s)	721, 834, 978
StyI	CCWWGG	3 cut(s)	107, 173, 1294
TaaI	ACNGT	4 cut(s)	7, 284, 307, 975
TaiI	ACGT	2 cut(s)	445, 549
TaqI	TCGA	3 cut(s)	58, 504, 1241
TasI	AATT	4 cut(s)	521, 766, 933, 1218
TatI	WGTACW	3 cut(s)	617, 1268, 1391
TauI	GCSGC	1 cut(s)	760
TfiI	GAWTC	3 cut(s)	44, 299, 929
Tru1I	TTAA	6 cut(s)	87, 483, 596, 845, 1142, 1341
Tru9I	TTAA	6 cut(s)	87, 483, 596, 845, 1142, 1341
TscAI	CASTG	2 cut(s)	54, 832
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	3 cut(s)	674, 698, 853
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	5 cut(s)	108, 158, 219, 390, 914
TspRI	CASTG	2 cut(s)	54, 832
Vha464I	CTTAAG	1 cut(s)	1340
VspI	ATTAAT	1 cut(s)	845
XagI	CCTNNNNNAGG	1 cut(s)	983
XapI	RAATTY	1 cut(s)	766
XbaI	TCTAGA	1 cut(s)	130
XceI	RCATGY	1 cut(s)	1026
XmnI	GAANNNNTTC	2 cut(s)	974, 1228
XspI	CTAG	4 cut(s)	29, 131, 371, 1167
ZraI	GACGTC	1 cut(s)	443
ZrmI	AGTACT	1 cut(s)	619
Zsp2I	ATGCAT	3 cut(s)	149, 844, 1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.