Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006120

Physical Location & Seq

Genomic Coordinates Reverse (-)

10083451 .. 10085401

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00088040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGATGATGAAAATTACAATAAAGCAAGAACTTAGTCATCCATGGCTCGCTCGGTTGGATCATCTAGAACACAGGAAATGCATTGAGAGGGAAGATACTATTCATCCATGGACAGGAAAAGCCTTTTCGTATAGACTATCATTTTCGAGTGATGCTCTGCTGCAACAACTTGCCATAGAGAATTATTCACTCAGACAATCAATATTCAGAGATGAACTAACCGAGTTGCAGAGGTGGTCAAAGGACATGGGACTTTGTGACATGGGGTTTGCACGACAGAAAACCGCACACTGTTATTTTGCAGTTGCATCAACTGTATCATCTCCTTCCCTTTCGGATGTGAGGCTGGCACTTGTCAAAAGTGCAATCCTTGTTACGGTGGCTGATGATTTTTTTGATGCGGAAGCAGCTCTTCTCCTTAGTCCACAACTCGGAATAGACATCCTCAAGTGCCCTCAAAATGAGCCGCTTACAAATTTACTTATGGTTTCAACACGCCTTTTGAACGATATTGGAACCTCTGAGCGGGAACAAGAGGAGGGGAAGCCAAACCTTGTTCTGCTACACATGAAGGAAAATCCGAATCTGGGAGTTGAAGAATCAATTGAGGTTATACAAAAGATGTTGGACGAAACGAAGAAACAGTTTCTGGAACAGGTTTTGGTGAATGGAGTGAGTGATATGCCAGAAGCATGTAAACTACTCCACTTTCAGTGCCTCAAAGCATTTCTGATGTTCTACGACTCAACAAATGCATTTGACTCCCAAACATATTTGCTTGCTGCCATCAACAAAGCGATTTATTTTCCGTTAAAGGTGGATCATAGAAGTTTGGCTAGTAGACATAGCCAAGATGGTACTAAAAGCCTTCAAATCCAACAGAGAGTAATTGGAACAAGTTCTATGTTCTCGAAGAGAATTACTGAGAGCAGAACTAGTACTACTGGTGCTATAAAGTTCCTCCAAGGAAAGAAGTTTTCTGCAAAGCCTTACGCGGGGATCTTATCACTTAAGATGAGAAAATCAATAACGTACTGCTACGACTGTTCCAAAGCCGAAAGCTTGTACTTATTTGTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0001101 GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0006979 GO:0007584 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0016101 GO:0016102 GO:0016114 GO:0016829 GO:0016835 GO:0016838 GO:0031667 GO:0042221 GO:0042493 GO:0043207 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0080013 GO:0080027 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00904 map00904

Pfam Domains

Protein Families

Terpene_synth Terpene_synth_C

Protein Analysis

360

Amino Acids

40.83

Weight (kDa)

8.04

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Terpene_synth_C	PF03936	81 - 137	5.8e-12	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	140 - 214	8.4e-11	Terpene synthase family 2, C-terminal metal binding
Terpene_synth_C	PF03936	154 - 214	5.8e-10	Terpene synthase family, metal binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006120)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61120
malus_domestica	MD17G1080300.v1.1 MD17G1080400.v1.1 MD17G1080500.v1.1 MD17G1080700.v1.1 MD17G1080800.v1.1
prunus_persica	Prupe.3G234300_v2.0.a1 Prupe.3G234400_v2.0.a1 Prupe.3G234400_v2.0.a1 Prupe.3G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0162311
rosa_laevigata	RLG00000021334 RLG00000021337
rosa_multiflora	Rmu_co8462281.1_g000001 Rmu_sc0004020.1_g000013
rosa_roxburghii	Rroxscaffold_2G00088040 Rroxscaffold_2G00088060 Rroxscaffold_2G00088110
rosa_rugosa	Rorug02G0496200 Rorug02G0496300
rosa_samantha	Rh2AG562300 Rh2AG562400 Rh2BG575400 Rh2CG545800 Rh2DG585200 Rh2DG585600
rosa_wichuraiana	Rw2G046570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	526
AccI	GTMKAC	1 cut(s)	841
AccII	CGCG	1 cut(s)	995
AciI	CCGC	5 cut(s)	285, 401, 467, 526, 995
AclWI	GGATC	3 cut(s)	66, 828, 1007
AcsI	RAATTY	1 cut(s)	475
AfaI	GTAC	4 cut(s)	859, 940, 1034, 1067
AfiI	CCNNNNNNNGG	6 cut(s)	113, 376, 431, 525, 587, 995
AflII	CTTAAG	1 cut(s)	1010
AgsI	TTSAA	4 cut(s)	492, 505, 596, 872
AhlI	ACTAGT	1 cut(s)	935
AluBI	AGCT	2 cut(s)	410, 1062
AluI	AGCT	2 cut(s)	410, 1062
AlwI	GGATC	3 cut(s)	66, 828, 1007
AlwNI	CAGNNNCTG	1 cut(s)	649
ApeKI	GCWGC	3 cut(s)	160, 407, 782
ApoI	RAATTY	1 cut(s)	475
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
Asp700I	GAANNNNTTC	1 cut(s)	898
AsuHPI	GGTGA	1 cut(s)	676
BaeGI	GKGCMC	1 cut(s)	455
BbvI	GCAGC	3 cut(s)	147, 419, 769
BccI	CCATC	2 cut(s)	794, 848
BcuI	ACTAGT	1 cut(s)	935
BfaI	CTAG	3 cut(s)	65, 837, 936
BfrI	CTTAAG	1 cut(s)	1010
BisI	GCNGC	4 cut(s)	161, 408, 467, 783
BlsI	GCNGC	4 cut(s)	162, 409, 468, 784
BmcAI	AGTACT	1 cut(s)	940
BmiI	GGNNCC	1 cut(s)	517
BmsI	GCATC	3 cut(s)	142, 317, 388
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpuEI	CTTGAG	1 cut(s)	431
BsaJI	CCNNGG	3 cut(s)	41, 107, 964
Bsc4I	CCNNNNNNNGG	6 cut(s)	113, 376, 431, 525, 587, 995
Bse1I	ACTGG	1 cut(s)	949
BseDI	CCNNGG	3 cut(s)	41, 107, 964
BseGI	GGATG	4 cut(s)	37, 103, 343, 441
BseLI	CCNNNNNNNGG	6 cut(s)	113, 376, 431, 525, 587, 995
BseMII	CTCAG	3 cut(s)	205, 513, 915
BseNI	ACTGG	1 cut(s)	949
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	455
BseXI	GCAGC	3 cut(s)	147, 419, 769
Bsh1236I	CGCG	1 cut(s)	995
BslFI	GGGAC	1 cut(s)	264
BslI	CCNNNNNNNGG	6 cut(s)	113, 376, 431, 525, 587, 995
BsmFI	GGGAC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	3 cut(s)	58, 820, 999
Bsp19I	CCATGG	2 cut(s)	41, 107
BspACI	CCGC	5 cut(s)	285, 401, 467, 526, 995
BspCNI	CTCAG	3 cut(s)	204, 514, 916
BspFNI	CGCG	1 cut(s)	995
BspLI	GGNNCC	1 cut(s)	517
BspPI	GGATC	3 cut(s)	66, 828, 1007
BspQI	GCTCTTC	1 cut(s)	417
BspTI	CTTAAG	1 cut(s)	1010
BsrBI	CCGCTC	1 cut(s)	526
BsrI	ACTGG	1 cut(s)	949
BssECI	CCNNGG	3 cut(s)	41, 107, 964
BssMI	GATC	3 cut(s)	58, 820, 999
BssT1I	CCWWGG	3 cut(s)	41, 107, 964
Bst4CI	ACNGT	5 cut(s)	293, 316, 379, 645, 1046
Bst6I	CTCTTC	2 cut(s)	417, 908
BstAFI	CTTAAG	1 cut(s)	1010
BstC8I	GCNNGC	3 cut(s)	48, 348, 780
BstDEI	CTNAG	5 cut(s)	32, 191, 419, 522, 924
BstDSI	CCRYGG	2 cut(s)	41, 107
BstF5I	GGATG	4 cut(s)	37, 103, 343, 441
BstFNI	CGCG	1 cut(s)	995
BstKTI	GATC	3 cut(s)	61, 823, 1002
BstMBI	GATC	3 cut(s)	58, 820, 999
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	696
BstSLI	GKGCMC	1 cut(s)	455
BstUI	CGCG	1 cut(s)	995
BstV1I	GCAGC	3 cut(s)	147, 419, 769
BstX2I	RGATCY	1 cut(s)	999
BstYI	RGATCY	1 cut(s)	999
BtgI	CCRYGG	2 cut(s)	41, 107
BtsCI	GGATG	4 cut(s)	37, 103, 343, 441
BtsIMutI	CAGTG	2 cut(s)	289, 719
Cac8I	GCNNGC	3 cut(s)	48, 348, 780
CaiI	CAGNNNCTG	1 cut(s)	649
Csp6I	GTAC	4 cut(s)	858, 939, 1033, 1066
CviAII	CATG	6 cut(s)	42, 108, 247, 262, 568, 693
CviQI	GTAC	4 cut(s)	858, 939, 1033, 1066
DdeI	CTNAG	5 cut(s)	32, 191, 419, 522, 924
DpnI	GATC	3 cut(s)	60, 822, 1001
DpnII	GATC	3 cut(s)	58, 820, 999
Eam1104I	CTCTTC	2 cut(s)	417, 908
EarI	CTCTTC	2 cut(s)	417, 908
Eco130I	CCWWGG	3 cut(s)	41, 107, 964
EcoT14I	CCWWGG	3 cut(s)	41, 107, 964
EcoT22I	ATGCAT	2 cut(s)	83, 757
ErhI	CCWWGG	3 cut(s)	41, 107, 964
FaeI	CATG	6 cut(s)	45, 111, 250, 265, 571, 696
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	1 cut(s)	264
FatI	CATG	6 cut(s)	41, 107, 246, 261, 567, 692
FauI	CCCGC	2 cut(s)	519, 988
FblI	GTMKAC	1 cut(s)	841
Fnu4HI	GCNGC	4 cut(s)	161, 408, 467, 783
FokI	GGATG	4 cut(s)	24, 90, 350, 428
Fsp4HI	GCNGC	4 cut(s)	161, 408, 467, 783
FspBI	CTAG	3 cut(s)	65, 837, 936
GluI	GCNGC	4 cut(s)	161, 408, 467, 783
Hin1II	CATG	6 cut(s)	45, 111, 250, 265, 571, 696
HindIII	AAGCTT	1 cut(s)	1060
HinfI	GANTC	4 cut(s)	583, 599, 743, 761
HphI	GGTGA	1 cut(s)	676
Hpy166II	GTNNAC	3 cut(s)	425, 698, 842
Hpy188I	TCNGA	7 cut(s)	194, 209, 337, 434, 523, 582, 732
Hpy188III	TCNNGA	3 cut(s)	65, 650, 910
Hpy8I	GTNNAC	3 cut(s)	425, 698, 842
HpyAV	CCTTC	3 cut(s)	336, 565, 878
HpyCH4III	ACNGT	5 cut(s)	293, 316, 379, 645, 1046
HpyCH4IV	ACGT	1 cut(s)	1031
HpyCH4V	TGCA	9 cut(s)	81, 163, 229, 272, 302, 308, 365, 755, 983
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	5 cut(s)	32, 191, 419, 522, 924
HpySE526I	ACGT	1 cut(s)	1031
Hsp92II	CATG	6 cut(s)	45, 111, 250, 265, 571, 696
Kzo9I	GATC	3 cut(s)	58, 820, 999
LguI	GCTCTTC	1 cut(s)	417
LpnPI	CCDG	8 cut(s)	58, 99, 332, 572, 635, 641, 699, 930
Lsp1109I	GCAGC	3 cut(s)	147, 419, 769
LweI	GCATC	3 cut(s)	142, 317, 388
MaeI	CTAG	3 cut(s)	65, 837, 936
MaeII	ACGT	1 cut(s)	1031
MaeIII	GTNAC	2 cut(s)	257, 373
MalI	GATC	3 cut(s)	60, 822, 1001
MbiI	CCGCTC	1 cut(s)	526
MboI	GATC	3 cut(s)	58, 820, 999
MboII	GAAGA	5 cut(s)	104, 404, 608, 649, 925
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	1 cut(s)	999
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	6 cut(s)	12, 181, 475, 603, 888, 918
MlyI	GAGTC	2 cut(s)	737, 755
MmeI	TCCRAC	3 cut(s)	36, 606, 901
Mph1103I	ATGCAT	2 cut(s)	83, 757
MroXI	GAANNNNTTC	1 cut(s)	898
MseI	TTAA	2 cut(s)	812, 1011
MspCI	CTTAAG	1 cut(s)	1010
MunI	CAATTG	1 cut(s)	603
MvnI	CGCG	1 cut(s)	995
MwoI	GCNNNNNNNGC	1 cut(s)	407
NcoI	CCATGG	2 cut(s)	41, 107
NdeII	GATC	3 cut(s)	58, 820, 999
NlaIII	CATG	6 cut(s)	45, 111, 250, 265, 571, 696
NlaIV	GGNNCC	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	257
NsiI	ATGCAT	2 cut(s)	83, 757
NspI	RCATGY	1 cut(s)	696
PciSI	GCTCTTC	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	898
PfeI	GAWTC	2 cut(s)	583, 599
PkrI	GCNGC	4 cut(s)	162, 409, 468, 784
PleI	GAGTC	2 cut(s)	737, 755
PpsI	GAGTC	2 cut(s)	737, 755
PspN4I	GGNNCC	1 cut(s)	517
PsrI	GAACNNNNNNTAC	2 cut(s)	925, 957
PstNI	CAGNNNCTG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	999
RsaI	GTAC	4 cut(s)	859, 940, 1034, 1067
RsaNI	GTAC	4 cut(s)	858, 939, 1033, 1066
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	812, 1011
SatI	GCNGC	4 cut(s)	161, 408, 467, 783
Sau3AI	GATC	3 cut(s)	58, 820, 999
ScaI	AGTACT	1 cut(s)	940
SchI	GAGTC	2 cut(s)	737, 755
SduI	GDGCHC	1 cut(s)	455
SetI	ASST	9 cut(s)	236, 412, 521, 555, 612, 660, 819, 1034, 1064
SfaNI	GCATC	3 cut(s)	142, 317, 388
SmlI	CTYRAG	2 cut(s)	446, 1010
SmoI	CTYRAG	2 cut(s)	446, 1010
SpeI	ACTAGT	1 cut(s)	935
Sse9I	AATT	6 cut(s)	12, 181, 475, 603, 888, 918
SsiI	CCGC	5 cut(s)	285, 401, 467, 526, 995
SspI	AATATT	1 cut(s)	204
SspMI	CTAG	3 cut(s)	65, 837, 936
StyI	CCWWGG	3 cut(s)	41, 107, 964
TaaI	ACNGT	5 cut(s)	293, 316, 379, 645, 1046
TaiI	ACGT	1 cut(s)	1034
TaqI	TCGA	2 cut(s)	146, 911
TasI	AATT	6 cut(s)	12, 181, 475, 603, 888, 918
TatI	WGTACW	2 cut(s)	938, 1065
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	2 cut(s)	583, 599
Tru1I	TTAA	2 cut(s)	812, 1011
Tru9I	TTAA	2 cut(s)	812, 1011
TscAI	CASTG	2 cut(s)	296, 719
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	3 cut(s)	160, 407, 782
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	4 cut(s)	23, 92, 228, 584
TspGWI	ACGGA	1 cut(s)	798
TspRI	CASTG	2 cut(s)	296, 719
Vha464I	CTTAAG	1 cut(s)	1010
XapI	RAATTY	1 cut(s)	475
XbaI	TCTAGA	1 cut(s)	64
XceI	RCATGY	1 cut(s)	696
XmiI	GTMKAC	1 cut(s)	841
XmnI	GAANNNNTTC	1 cut(s)	898
XspI	CTAG	3 cut(s)	65, 837, 936
ZrmI	AGTACT	1 cut(s)	940
Zsp2I	ATGCAT	2 cut(s)	83, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.