Rorug02G0496300

Belongs to the terpene synthase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
62687098 .. 62688775
1678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0496300.1

Sequence Viewer

Length: 1179 bp
ATGGGGGACGGTGATGTCGTGCTTAGGCGAGTTCGTACGGACTTCGGCGACTACGAGGAAGATGTGATTGCGGAGATCCTAGCGAGGCTACCGGTCAAATCCTTGATGCGATTCCGGTGCGTCTGCAAGTCATGGCGTGCTTTGATCTCCGAATCCTATTTTGTAAAGAAACACCTCAGCTACGGAGAGAGAGGCATCACCGAGAGCGCTCACAGGCTTATTTTCATGCTGGATCCTCCCTTGGTCTTGGACTATGAAGCCTTGAAAAGTATGAAGGATGATGATTATGGTGATGGTGCTGGTGCTCAGTTTGCAGTCACTCAGCTGGATTTTCCGGTGACGAAATCTATCGCTGATTCCGGTTATAGAGTTGGTGTGGGCTCTTGCAATGGCTTGGTATGTGTACAAGTTGACTTCGAGGCCATTATGTTATGGAACCCTTGTACTAGAGACTCCAAGGTTTTACCAAAACCTCCTCGAGTTATAAACTCCAAGTTTAGCTACGATTTTAATGGATTCGGGTATGATTCTGCTAGTGACGACTACAAGGTGATACGGGGGTTCACTGATTATCTTGCTATGAAAATCATGATTCACATCTTTTCACTGAAAACAGGTTCATGGAGGACTGTTGAAGACATTGATTATGTGACATTAATAATGCGGCAGGGGTTGTTCTTAAACGGAGCTCTGCATTGGCTATGTAATCTACCTGAAGGGGGCTCAAGAATTTTGTCTTTTGATTTAGAGGCGGAGAAATTTCAGAAGACGATTCCATTACCCTATGATGACTGGTTTTTTGATCACTTGATTCATAAAAATTGCCTGTGTGTACTTGCTTGCCCAACTCGAACCAACACTTTCAACATATGGATGATGAAAGAATATGGGGTCAAGGAATCCTGGACTGAAGTCTTACAATTTTCTTTGGAGACTTATGCAGAGCATTTTGATGATTATCGTGAATATTTCAGGCCTGTGTGCATTTTAGAGAATGGTGTAGTTTTGATTGACGAGATGGGTGACGGTCAACACCTCATGGTATTATCAAATCTAAAGGAGAAGAAATTCAAGCATGTTGTTGAGGTCGCGAAGAACTGGGAGTTTACAACAGTCATTTATCGAGAGACATTAGTTTCACCAGACGTCCACACATACAAAACCAACAATGTGAGCTAG

Protein Analysis

392

Amino Acids

45.15

Weight (kDa)

5.46

Isoelectric Point (pI)

26.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 55 6.5e-10 F-box domain
F-box-like PF12937 21 - 53 1.8e-06 F-box-like
FBA_3 PF08268 124 - 360 2.3e-25 F-box associated beta propeller domain
FBA_1 PF07734 126 - 371 1.3e-33 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AasI GACNNNNNNGTC 1 cut(s) 14
AatII GACGTC 1 cut(s) 1149
AccII CGCG 1 cut(s) 1091
AciI CCGC 3 cut(s) 71, 664, 752
AclWI GGATC 3 cut(s) 70, 227, 240
AcsI RAATTY 3 cut(s) 729, 758, 1067
AcuI CTGAAG 2 cut(s) 735, 930
AcyI GRCGYC 1 cut(s) 1146
AfaI GTAC 4 cut(s) 37, 405, 445, 834
AfeI AGCGCT 1 cut(s) 208
AfiI CCNNNNNNNGG 1 cut(s) 719
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 4 cut(s) 265, 635, 865, 1072
AjnI CCWGG 1 cut(s) 902
AluBI AGCT 5 cut(s) 180, 325, 501, 689, 1176
AluI AGCT 5 cut(s) 180, 325, 501, 689, 1176
Alw21I GWGCWC 2 cut(s) 307, 691
Alw26I GTCTC 3 cut(s) 444, 926, 1121
AlwI GGATC 3 cut(s) 70, 227, 240
Ama87I CYCGRG 1 cut(s) 477
Aor51HI AGCGCT 1 cut(s) 208
AoxI GGCC 2 cut(s) 420, 974
ApoI RAATTY 3 cut(s) 729, 758, 1067
ArsI GACNNNNNNTTYG 2 cut(s) 782, 814
AseI ATTAAT 1 cut(s) 656
AsiGI ACCGGT 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 1067
AspLEI GCGC 1 cut(s) 209
AsuHPI GGTGA 7 cut(s) 23, 190, 302, 349, 562, 1034, 1131
AvaI CYCGRG 1 cut(s) 477
BaeI ACNNNNGTAYC 2 cut(s) 545, 578
BamHI GGATCC 1 cut(s) 232
BanII GRGCYC 3 cut(s) 383, 691, 725
BbsI GAAGAC 2 cut(s) 642, 773
Bbv12I GWGCWC 2 cut(s) 307, 691
BbvCI CCTCAGC 1 cut(s) 176
BccI CCATC 2 cut(s) 287, 1012
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 1 cut(s) 904
BclI TGATCA 1 cut(s) 802
BcoDI GTCTC 3 cut(s) 444, 926, 1121
BfaI CTAG 4 cut(s) 80, 447, 534, 1177
BfoI RGCGCY 1 cut(s) 210
BisI GCNGC 1 cut(s) 665
BlsI GCNGC 1 cut(s) 666
Bme1390I CCNGG 1 cut(s) 904
BmeT110I CYCGRG 1 cut(s) 477
BmiI GGNNCC 2 cut(s) 234, 437
BmrFI CCNGG 1 cut(s) 904
BmrI ACTGGG 1 cut(s) 1108
BmsI GCATC 2 cut(s) 96, 204
BmuI ACTGGG 1 cut(s) 1108
BoxI GACNNNNGTC 1 cut(s) 911
BpiI GAAGAC 2 cut(s) 642, 773
Bpu10I CCTNAGC 2 cut(s) 23, 176
BpuEI CTTGAG 1 cut(s) 709
BsaBI GATNNNNATC 2 cut(s) 596, 957
BsaHI GRCGYC 1 cut(s) 1146
BsaJI CCNNGG 2 cut(s) 240, 456
BsaWI WCCGGW 4 cut(s) 91, 114, 334, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 719
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 797, 1103
Bse3DI GCAATG 1 cut(s) 394
Bse8I GATNNNNATC 2 cut(s) 596, 957
BseBI CCWGG 1 cut(s) 904
BseDI CCNNGG 2 cut(s) 240, 456
BseGI GGATG 2 cut(s) 283, 879
BseJI GATNNNNATC 2 cut(s) 596, 957
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 3 cut(s) 190, 320, 335
BseNI ACTGG 2 cut(s) 797, 1103
BseRI GAGGAG 1 cut(s) 465
Bsh1236I CGCG 1 cut(s) 1091
BshFI GGCC 2 cut(s) 422, 976
BshTI ACCGGT 1 cut(s) 91
BsiHKAI GWGCWC 2 cut(s) 307, 691
BsiHKCI CYCGRG 1 cut(s) 477
BsiSI CCGG 4 cut(s) 92, 115, 335, 360
BsiWI CGTACG 1 cut(s) 35
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 719
BsmAI GTCTC 3 cut(s) 444, 926, 1121
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 2 cut(s) 422, 976
BsoBI CYCGRG 1 cut(s) 477
Bsp1286I GDGCHC 4 cut(s) 307, 383, 691, 725
Bsp1407I TGTACA 1 cut(s) 403
Bsp143I GATC 4 cut(s) 75, 144, 232, 802
Bsp68I TCGCGA 1 cut(s) 1091
BspACI CCGC 3 cut(s) 71, 664, 752
BspANI GGCC 2 cut(s) 422, 976
BspCNI CTCAG 3 cut(s) 189, 319, 334
BspFNI CGCG 1 cut(s) 1091
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 2 cut(s) 234, 437
BspPI GGATC 3 cut(s) 70, 227, 240
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 91
BsrGI TGTACA 1 cut(s) 403
BsrI ACTGG 2 cut(s) 797, 1103
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 240, 456
BssMI GATC 4 cut(s) 75, 144, 232, 802
BssNI GRCGYC 1 cut(s) 1146
BssT1I CCWWGG 2 cut(s) 240, 456
Bst2UI CCWGG 1 cut(s) 904
Bst4CI ACNGT 4 cut(s) 11, 631, 1028, 1114
BstACI GRCGYC 1 cut(s) 1146
BstAUI TGTACA 1 cut(s) 403
BstC8I GCNNGC 2 cut(s) 138, 841
BstDEI CTNAG 4 cut(s) 23, 176, 306, 321
BstF5I GGATG 2 cut(s) 283, 879
BstFNI CGCG 1 cut(s) 1091
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 4 cut(s) 78, 147, 235, 805
BstMAI GTCTC 3 cut(s) 444, 926, 1121
BstMBI GATC 4 cut(s) 75, 144, 232, 802
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 1 cut(s) 904
BstNSI RCATGY 1 cut(s) 1079
BstPAI GACNNNNGTC 1 cut(s) 911
BstSCI CCNGG 1 cut(s) 902
BstUI CGCG 1 cut(s) 1091
BstV2I GAAGAC 2 cut(s) 642, 773
BstX2I RGATCY 2 cut(s) 75, 232
BstYI RGATCY 2 cut(s) 75, 232
BsuRI GGCC 2 cut(s) 422, 976
BtsCI GGATG 2 cut(s) 283, 879
BtsIMutI CAGTG 2 cut(s) 564, 605
BtuMI TCGCGA 1 cut(s) 1091
Cac8I GCNNGC 2 cut(s) 138, 841
CciI TCATGA 1 cut(s) 588
CfoI GCGC 1 cut(s) 209
Cfr10I RCCGGY 1 cut(s) 91
CseI GACGC 1 cut(s) 109
Csp6I GTAC 4 cut(s) 36, 404, 444, 833
CspAI ACCGGT 1 cut(s) 91
CviAII CATG 6 cut(s) 132, 226, 589, 621, 1039, 1076
CviQI GTAC 4 cut(s) 36, 404, 444, 833
DdeI CTNAG 4 cut(s) 23, 176, 306, 321
DpnI GATC 4 cut(s) 77, 146, 234, 804
DpnII GATC 4 cut(s) 75, 144, 232, 802
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 767
Ecl136II GAGCTC 1 cut(s) 689
Eco130I CCWWGG 2 cut(s) 240, 456
Eco147I AGGCCT 1 cut(s) 976
Eco24I GRGCYC 3 cut(s) 383, 691, 725
Eco47III AGCGCT 1 cut(s) 208
Eco53kI GAGCTC 1 cut(s) 689
Eco57I CTGAAG 2 cut(s) 735, 930
Eco88I CYCGRG 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 902
EcoT14I CCWWGG 2 cut(s) 240, 456
EcoT38I GRGCYC 3 cut(s) 383, 691, 725
ErhI CCWWGG 2 cut(s) 240, 456
FaeI CATG 6 cut(s) 135, 229, 592, 624, 1042, 1079
FaqI GGGAC 1 cut(s) 20
FatI CATG 6 cut(s) 131, 225, 588, 620, 1038, 1075
FauNDI CATATG 1 cut(s) 869
FbaI TGATCA 1 cut(s) 802
Fnu4HI GCNGC 1 cut(s) 665
FokI GGATG 2 cut(s) 290, 886
FriOI GRGCYC 3 cut(s) 383, 691, 725
Fsp4HI GCNGC 1 cut(s) 665
FspBI CTAG 4 cut(s) 80, 447, 534, 1177
GlaI GCGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 665
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 2 cut(s) 422, 976
HapII CCGG 4 cut(s) 92, 115, 335, 360
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 209
Hin1I GRCGYC 1 cut(s) 1146
Hin1II CATG 6 cut(s) 135, 229, 592, 624, 1042, 1079
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HincII GTYRAC 2 cut(s) 412, 1031
HindII GTYRAC 2 cut(s) 412, 1031
HpaII CCGG 4 cut(s) 92, 115, 335, 360
HphI GGTGA 7 cut(s) 23, 190, 302, 349, 562, 1034, 1131
Hpy166II GTNNAC 7 cut(s) 404, 412, 564, 833, 1031, 1107, 1150
Hpy188I TCNGA 2 cut(s) 151, 765
Hpy188III TCNNGA 5 cut(s) 589, 726, 962, 1090, 1124
Hpy8I GTNNAC 7 cut(s) 404, 412, 564, 833, 1031, 1107, 1150
HpyAV CCTTC 2 cut(s) 268, 710
HpyCH4III ACNGT 4 cut(s) 11, 631, 1028, 1114
HpyCH4IV ACGT 1 cut(s) 1146
HpyCH4V TGCA 6 cut(s) 126, 314, 387, 694, 941, 984
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 4 cut(s) 23, 176, 306, 321
HpySE526I ACGT 1 cut(s) 1146
Hsp92I GRCGYC 1 cut(s) 1146
Hsp92II CATG 6 cut(s) 135, 229, 592, 624, 1042, 1079
HspAI GCGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 802
Kzo9I GATC 4 cut(s) 75, 144, 232, 802
LmnI GCTCC 1 cut(s) 686
LweI GCATC 2 cut(s) 96, 204
MaeI CTAG 4 cut(s) 80, 447, 534, 1177
MaeII ACGT 1 cut(s) 1146
MaeIII GTNAC 5 cut(s) 316, 337, 536, 649, 1022
MalI GATC 4 cut(s) 77, 146, 234, 804
MboI GATC 4 cut(s) 75, 144, 232, 802
MboII GAAGA 5 cut(s) 71, 647, 778, 1075, 1105
MflI RGATCY 2 cut(s) 75, 232
MhlI GDGCHC 4 cut(s) 307, 383, 691, 725
MluCI AATT 5 cut(s) 729, 758, 820, 920, 1067
MlyI GAGTC 1 cut(s) 446
MroXI GAANNNNTTC 1 cut(s) 1067
MseI TTAA 3 cut(s) 510, 656, 680
MslI CAYNNNNRTG 2 cut(s) 872, 951
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 4 cut(s) 92, 115, 335, 360
MspR9I CCNGG 1 cut(s) 904
MvaI CCWGG 1 cut(s) 904
MvnI CGCG 1 cut(s) 1091
MwoI GCNNNNNNNGC 1 cut(s) 311
NdeI CATATG 1 cut(s) 869
NdeII GATC 4 cut(s) 75, 144, 232, 802
NlaIII CATG 6 cut(s) 135, 229, 592, 624, 1042, 1079
NlaIV GGNNCC 2 cut(s) 234, 437
NmuCI GTSAC 5 cut(s) 316, 337, 536, 649, 1022
NruI TCGCGA 1 cut(s) 1091
NspI RCATGY 1 cut(s) 1079
PaeR7I CTCGAG 1 cut(s) 477
PagI TCATGA 1 cut(s) 588
PceI AGGCCT 1 cut(s) 976
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 51
PdmI GAANNNNTTC 1 cut(s) 1067
PfeI GAWTC 9 cut(s) 111, 152, 356, 516, 527, 592, 772, 811, 899
Pfl23II CGTACG 1 cut(s) 35
PfoI TCCNGGA 1 cut(s) 902
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 1 cut(s) 666
PleI GAGTC 1 cut(s) 446
PpsI GAGTC 1 cut(s) 446
PshAI GACNNNNGTC 1 cut(s) 911
PshBI ATTAAT 1 cut(s) 656
PsiI TTATAA 1 cut(s) 485
Psp124BI GAGCTC 1 cut(s) 691
Psp6I CCWGG 1 cut(s) 902
PspGI CCWGG 1 cut(s) 902
PspLI CGTACG 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 234, 437
PspXI VCTCGAGB 1 cut(s) 477
PsuI RGATCY 2 cut(s) 75, 232
PvuII CAGCTG 1 cut(s) 325
RruI TCGCGA 1 cut(s) 1091
RsaI GTAC 4 cut(s) 37, 405, 445, 834
RsaNI GTAC 4 cut(s) 36, 404, 444, 833
RseI CAYNNNNRTG 2 cut(s) 872, 951
SacI GAGCTC 1 cut(s) 691
SaqAI TTAA 3 cut(s) 510, 656, 680
SatI GCNGC 1 cut(s) 665
Sau3AI GATC 4 cut(s) 75, 144, 232, 802
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 904
SduI GDGCHC 4 cut(s) 307, 383, 691, 725
SfaNI GCATC 2 cut(s) 96, 204
Sfr274I CTCGAG 1 cut(s) 477
SlaI CTCGAG 1 cut(s) 477
SmiMI CAYNNNNRTG 2 cut(s) 872, 951
SmlI CTYRAG 2 cut(s) 477, 724
SmoI CTYRAG 2 cut(s) 477, 724
Sse9I AATT 5 cut(s) 729, 758, 820, 920, 1067
SseBI AGGCCT 1 cut(s) 976
SsiI CCGC 3 cut(s) 71, 664, 752
SspI AATATT 1 cut(s) 968
SspMI CTAG 4 cut(s) 80, 447, 534, 1177
SstI GAGCTC 1 cut(s) 691
StuI AGGCCT 1 cut(s) 976
StyD4I CCNGG 1 cut(s) 902
StyI CCWWGG 2 cut(s) 240, 456
TaaI ACNGT 4 cut(s) 11, 631, 1028, 1114
TaiI ACGT 1 cut(s) 1149
TaqI TCGA 4 cut(s) 417, 478, 850, 1123
TasI AATT 5 cut(s) 729, 758, 820, 920, 1067
TatI WGTACW 3 cut(s) 403, 443, 832
TauI GCSGC 1 cut(s) 667
TfiI GAWTC 9 cut(s) 111, 152, 356, 516, 527, 592, 772, 811, 899
Tru1I TTAA 3 cut(s) 510, 656, 680
Tru9I TTAA 3 cut(s) 510, 656, 680
TscAI CASTG 2 cut(s) 571, 612
TseFI GTSAC 5 cut(s) 316, 337, 536, 649, 1022
Tsp45I GTSAC 5 cut(s) 316, 337, 536, 649, 1022
TspDTI ATGAA 7 cut(s) 214, 270, 287, 596, 609, 803, 893
TspGWI ACGGA 3 cut(s) 53, 198, 699
TspRI CASTG 2 cut(s) 571, 612
VspI ATTAAT 1 cut(s) 656
XapI RAATTY 3 cut(s) 729, 758, 1067
XceI RCATGY 1 cut(s) 1079
XhoI CTCGAG 1 cut(s) 477
XmnI GAANNNNTTC 1 cut(s) 1067
XspI CTAG 4 cut(s) 80, 447, 534, 1177
ZraI GACGTC 1 cut(s) 1147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.