Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004067

Physical Location & Seq

Genomic Coordinates Forward (+)

9309623 .. 9312295

Gene Structure 2673 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1108500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGTGGGATAACATGGAAGATCCACAAGTGGAGCACAATCTTTGGGTCTTATGGAGAGGAAAAAGGTTTGATGTGAAGATCCATTTGGGTGCCACTCTTAAGGATCTCGGGCACGAACTGCAAAAGTTAACGGATGTTAAAGCAGATACGATGAGGCTAATTGTTCCAAAGTTTTCCGATAAAAGCTCGAAAATGTTGTCTCCTTTCTCTGATGAGCATCAGAACTTGAGTTTACAGGAAGCTTCATTTGTTGAGGGAAAGTCCATCAGAATGATGGGAGTGTCTGAAAACGAGGTTGATGAAGTTTTACAAAATGCAAAGGCAAACTTGGAGGTTGGAAGTTCACACAAACTTCAGAAGAACCCTGATATGGAGCCTGATCCTGATGCCCAGTCTGACAATCAGAACAAGTTTGAGCCCAGTCCTCATGATTCTCAGGGCACTGATGAATCATCATCTCAATTTACGGGAAGCTGGACCTTATTTGGAAAAGAATTCAGTGAGTCTATGATCTGTCAACCTGAGTTAGCAGGGACCGAGTCTCGTGAAGAACCAGATCCTGATAATATGGATAATATGGAAAGCAGGGGGCAAGCAAGGAATAACGTGGACGAACCTGATCCTGATGCCGAGGATGCAAAAGCAGATAATTTAGGATATAGTTCCTATAGAAATATCATAAGACCTAACGACGACAGTTCTTTGGTTACTGAAACCATCAAACATGAAGACGATCCAAGGAAGGCTTATAATGAACCTGATCCTGATGATTCCCAGTCAAATGGAGTCACTCAGGCAGAGCCTGATCCTGATGCTAATTTGGTGCATCCACAGGAAACATCCAGAATGCAGATTGATGAACCTGATCCAGATGATCAAGAATTTCAAAGAATTCAAGACCCTGTTACAATCTTTTGTAAACGCTTGCAGGAGAACATTAAGATGCTGGAAGCTGAGGTTAATCGTGCACAGCCTACCACTGTCCTCCAAACTCTCTTAAAGATAATAAGGAATGTGCTTGAACACCCAGGTGAGACGAAATACAGGAAACTTTGCAAGGCGAACTCCACAATCCTAGGGAATGTGGCAAACTACAAAGCTGCCATGGAATTCCTTCTTCTGATTGGCTTCAACGAAAGCGTCATGGATGGAAAACAAGAGACTTATCTTGTGCTGAAGCGGGATGATCCGGGATTATTATGGCTTGCCAAGTCCGCCCTTGAGGCAAGCGTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0009987 GO:0016787 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0032446 GO:0033554 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070011 GO:0070628 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB WLM

Protein Analysis

413

Amino Acids

46.53

Weight (kDa)

4.58

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUB	PF09409	326 - 399	1.6e-16	PUB domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35690
fragaria_vesca	FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820
malus_domestica	MD09G1117000.v1.1 MD17G1108500.v1.1
prunus_persica	Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1
pyrus_communis	pycom09g04190 pycom09g04200 pycom17g10100
rosa_chinensis	RchiOBHm_Chr2g0157621
rosa_laevigata	RLG00000021001 RLG00000021004
rosa_multiflora	Rmu_co8368661.1_g000001 Rmu_sc0000195.1_g000050 Rmu_sc0005255.1_g000015 Rmu_sc0006475.1_g000002 Rmu_sc0015282.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092080
rosa_rugosa	Rorug02G0462400
rosa_samantha	Rh2AG526500 Rh2BG541400 Rh2CG511200 Rh2DG549900
rosa_wichuraiana	Rw2G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	2 cut(s)	1180, 1215
AcsI	RAATTY	4 cut(s)	494, 881, 891, 1109
AcuI	CTGAAG	2 cut(s)	338, 1196
AfiI	CCNNNNNNNGG	1 cut(s)	370
AflII	CTTAAG	1 cut(s)	98
AgsI	TTSAA	4 cut(s)	887, 896, 1022, 1132
AjnI	CCWGG	1 cut(s)	1027
AjuI	GAANNNNNNNTTGG	2 cut(s)	68, 100
AleI	CACNNNNGTG	1 cut(s)	1029
AluBI	AGCT	5 cut(s)	186, 242, 474, 953, 1100
AluI	AGCT	5 cut(s)	186, 242, 474, 953, 1100
Alw21I	GWGCWC	2 cut(s)	36, 970
Alw26I	GTCTC	4 cut(s)	204, 546, 1028, 1154
Alw44I	GTGCAC	1 cut(s)	966
AlwNI	CAGNNNCTG	2 cut(s)	560, 803
Ama87I	CYCGRG	1 cut(s)	107
ApaLI	GTGCAC	1 cut(s)	966
ApeKI	GCWGC	1 cut(s)	1100
ApoI	RAATTY	4 cut(s)	494, 881, 891, 1109
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
Asp700I	GAANNNNTTC	1 cut(s)	1113
AspA2I	CCTAGG	1 cut(s)	1075
AspS9I	GGNCC	2 cut(s)	477, 534
AsuC2I	CCSGG	1 cut(s)	1191
AsuHPI	GGTGA	1 cut(s)	1043
AvaI	CYCGRG	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	477, 534
AvrII	CCTAGG	1 cut(s)	1075
BaeGI	GKGCMC	3 cut(s)	114, 443, 970
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	420
BauI	CACGAG	1 cut(s)	543
BbsI	GAAGAC	1 cut(s)	735
Bbv12I	GWGCWC	2 cut(s)	36, 970
BbvCI	CCTCAGC	1 cut(s)	954
BbvI	GCAGC	1 cut(s)	1087
BccI	CCATC	4 cut(s)	268, 272, 725, 1142
BciT130I	CCWGG	1 cut(s)	1029
BclI	TGATCA	1 cut(s)	874
BcnI	CCSGG	1 cut(s)	1191
BcoDI	GTCTC	4 cut(s)	204, 546, 1028, 1154
BfaI	CTAG	1 cut(s)	1076
BfmI	CTRYAG	1 cut(s)	667
BfrI	CTTAAG	1 cut(s)	98
BglI	GCCNNNNNGGC	1 cut(s)	1223
BisI	GCNGC	1 cut(s)	1101
BlnI	CCTAGG	1 cut(s)	1075
BlsI	GCNGC	1 cut(s)	1102
Bme1390I	CCNGG	2 cut(s)	1029, 1191
Bme18I	GGWCC	2 cut(s)	477, 534
BmeT110I	CYCGRG	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	477, 534
BmiI	GGNNCC	3 cut(s)	91, 375, 535
BmrFI	CCNGG	2 cut(s)	1029, 1191
BmrI	ACTGGG	3 cut(s)	385, 414, 769
BmsI	GCATC	7 cut(s)	226, 376, 616, 625, 802, 835, 933
BmuI	ACTGGG	3 cut(s)	385, 414, 769
BpiI	GAAGAC	1 cut(s)	735
Bpu10I	CCTNAGC	1 cut(s)	954
BpuEI	CTTGAG	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	1191
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	5 cut(s)	630, 737, 1027, 1075, 1104
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	3 cut(s)	391, 420, 775
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	1029
BseDI	CCNNGG	5 cut(s)	630, 737, 1027, 1075, 1104
BseGI	GGATG	6 cut(s)	139, 640, 826, 839, 1153, 1189
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	4 cut(s)	449, 513, 806, 945
BseNI	ACTGG	3 cut(s)	391, 420, 775
BseSI	GKGCMC	3 cut(s)	114, 443, 970
BseXI	GCAGC	1 cut(s)	1087
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	2 cut(s)	36, 970
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	1190
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	4 cut(s)	204, 546, 1028, 1154
BsmBI	CGTCTC	1 cut(s)	1028
BsmFI	GGGAC	1 cut(s)	547
BsmI	GAATGC	1 cut(s)	852
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	5 cut(s)	36, 114, 420, 443, 970
Bsp19I	CCATGG	1 cut(s)	1104
BspACI	CCGC	2 cut(s)	1180, 1215
BspCNI	CTCAG	4 cut(s)	448, 514, 805, 946
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	3 cut(s)	91, 375, 535
BspT107I	GGYRCC	1 cut(s)	89
BspTI	CTTAAG	1 cut(s)	98
BsrI	ACTGG	3 cut(s)	391, 420, 775
BssECI	CCNNGG	5 cut(s)	630, 737, 1027, 1075, 1104
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	3 cut(s)	737, 1075, 1104
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	1029
Bst4CI	ACNGT	2 cut(s)	698, 982
BstAFI	CTTAAG	1 cut(s)	98
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstC8I	GCNNGC	4 cut(s)	594, 926, 1206, 1228
BstDEI	CTNAG	4 cut(s)	435, 522, 792, 954
BstDSI	CCRYGG	1 cut(s)	1104
BstF5I	GGATG	6 cut(s)	139, 640, 826, 839, 1153, 1189
BstMAI	GTCTC	4 cut(s)	204, 546, 1028, 1154
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 635, 1214, 1223
BstNI	CCWGG	1 cut(s)	1029
BstSCI	CCNGG	2 cut(s)	1027, 1189
BstSFI	CTRYAG	1 cut(s)	667
BstSLI	GKGCMC	3 cut(s)	114, 443, 970
BstV1I	GCAGC	1 cut(s)	1087
BstV2I	GAAGAC	1 cut(s)	735
BstX2I	RGATCY	4 cut(s)	19, 78, 103, 556
BstXI	CCANNNNNNTGG	1 cut(s)	782
BstYI	RGATCY	4 cut(s)	19, 78, 103, 556
BtgI	CCRYGG	1 cut(s)	1104
BtsCI	GGATG	6 cut(s)	139, 640, 826, 839, 1153, 1189
BtsIMutI	CAGTG	3 cut(s)	441, 505, 978
Cac8I	GCNNGC	4 cut(s)	594, 926, 1206, 1228
CaiI	CAGNNNCTG	2 cut(s)	560, 803
CciI	TCATGA	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	477, 534
CseI	GACGC	1 cut(s)	1129
CviAII	CATG	5 cut(s)	13, 428, 725, 1105, 1144
DdeI	CTNAG	4 cut(s)	435, 522, 792, 954
EciI	GGCGGA	1 cut(s)	1204
Eco130I	CCWWGG	3 cut(s)	737, 1075, 1104
Eco24I	GRGCYC	1 cut(s)	420
Eco47I	GGWCC	2 cut(s)	477, 534
Eco57I	CTGAAG	2 cut(s)	338, 1196
Eco88I	CYCGRG	1 cut(s)	107
EcoRI	GAATTC	3 cut(s)	494, 891, 1109
EcoRII	CCWGG	1 cut(s)	1027
EcoT14I	CCWWGG	3 cut(s)	737, 1075, 1104
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	3 cut(s)	737, 1075, 1104
Esp3I	CGTCTC	1 cut(s)	1028
FaeI	CATG	5 cut(s)	16, 431, 728, 1108, 1147
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 730, 762
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	5 cut(s)	12, 427, 724, 1104, 1143
FauI	CCCGC	1 cut(s)	1173
FbaI	TGATCA	1 cut(s)	874
Fnu4HI	GCNGC	1 cut(s)	1101
FokI	GGATG	6 cut(s)	146, 647, 813, 826, 1160, 1196
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	1101
FspBI	CTAG	1 cut(s)	1076
GluI	GCNGC	1 cut(s)	1101
HapII	CCGG	1 cut(s)	1190
HgaI	GACGC	1 cut(s)	1129
Hin1II	CATG	5 cut(s)	16, 431, 728, 1108, 1147
HincII	GTYRAC	2 cut(s)	129, 518
HindII	GTYRAC	2 cut(s)	129, 518
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	6 cut(s)	431, 449, 503, 539, 770, 786
HpaI	GTTAAC	1 cut(s)	129
HpaII	CCGG	1 cut(s)	1190
HphI	GGTGA	1 cut(s)	1043
Hpy166II	GTNNAC	7 cut(s)	129, 233, 344, 518, 610, 920, 968
Hpy188I	TCNGA	9 cut(s)	178, 211, 222, 269, 286, 357, 397, 405, 1122
Hpy8I	GTNNAC	7 cut(s)	129, 233, 344, 518, 610, 920, 968
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	2 cut(s)	736, 1124
HpyCH4III	ACNGT	2 cut(s)	698, 982
HpyCH4IV	ACGT	1 cut(s)	606
HpyCH4V	TGCA	8 cut(s)	121, 317, 638, 826, 850, 928, 968, 1056
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 635, 1214, 1223
HpyF3I	CTNAG	4 cut(s)	435, 522, 792, 954
HpySE526I	ACGT	1 cut(s)	606
Hsp92II	CATG	5 cut(s)	16, 431, 728, 1108, 1147
Ksp22I	TGATCA	1 cut(s)	874
KspAI	GTTAAC	1 cut(s)	129
LmnI	GCTCC	2 cut(s)	31, 373
Lsp1109I	GCAGC	1 cut(s)	1087
LweI	GCATC	7 cut(s)	226, 376, 616, 625, 802, 835, 933
MaeI	CTAG	1 cut(s)	1076
MaeII	ACGT	1 cut(s)	606
MaeIII	GTNAC	3 cut(s)	706, 787, 904
MboII	GAAGA	6 cut(s)	29, 88, 370, 560, 740, 1109
MflI	RGATCY	4 cut(s)	19, 78, 103, 556
MhlI	GDGCHC	5 cut(s)	36, 114, 420, 443, 970
MluCI	AATT	8 cut(s)	159, 461, 494, 649, 817, 881, 891, 1109
MlyI	GAGTC	3 cut(s)	512, 548, 795
MmeI	TCCRAC	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	1113
MseI	TTAA	6 cut(s)	99, 128, 138, 939, 960, 998
MslI	CAYNNNNRTG	4 cut(s)	87, 269, 941, 1029
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	1 cut(s)	1190
MspR9I	CCNGG	2 cut(s)	1029, 1191
Mva1269I	GAATGC	1 cut(s)	852
MvaI	CCWGG	1 cut(s)	1029
MwoI	GCNNNNNNNGC	4 cut(s)	118, 635, 1214, 1223
NciI	CCSGG	1 cut(s)	1191
NcoI	CCATGG	1 cut(s)	1104
NlaIII	CATG	5 cut(s)	16, 431, 728, 1108, 1147
NlaIV	GGNNCC	3 cut(s)	91, 375, 535
NmeAIII	GCCGAG	1 cut(s)	655
NmuCI	GTSAC	1 cut(s)	787
OliI	CACNNNNGTG	1 cut(s)	1029
PagI	TCATGA	1 cut(s)	427
PctI	GAATGC	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	1113
PfeI	GAWTC	3 cut(s)	431, 449, 770
PflFI	GACNNNGTC	1 cut(s)	538
PfoI	TCCNGGA	1 cut(s)	1189
PkrI	GCNGC	1 cut(s)	1102
PleI	GAGTC	3 cut(s)	511, 547, 794
PpsI	GAGTC	3 cut(s)	511, 547, 794
PsiI	TTATAA	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	1027
PspGI	CCWGG	1 cut(s)	1027
PspN4I	GGNNCC	3 cut(s)	91, 375, 535
PspPI	GGNCC	2 cut(s)	477, 534
PstNI	CAGNNNCTG	2 cut(s)	560, 803
PsuI	RGATCY	4 cut(s)	19, 78, 103, 556
PsyI	GACNNNGTC	1 cut(s)	538
RseI	CAYNNNNRTG	4 cut(s)	87, 269, 941, 1029
SaqAI	TTAA	6 cut(s)	99, 128, 138, 939, 960, 998
SatI	GCNGC	1 cut(s)	1101
Sau96I	GGNCC	2 cut(s)	477, 534
SchI	GAGTC	3 cut(s)	512, 548, 795
ScrFI	CCNGG	2 cut(s)	1029, 1191
SduI	GDGCHC	5 cut(s)	36, 114, 420, 443, 970
SfaNI	GCATC	7 cut(s)	226, 376, 616, 625, 802, 835, 933
SfcI	CTRYAG	1 cut(s)	667
SinI	GGWCC	2 cut(s)	477, 534
SmiMI	CAYNNNNRTG	4 cut(s)	87, 269, 941, 1029
SmlI	CTYRAG	3 cut(s)	98, 226, 1220
SmoI	CTYRAG	3 cut(s)	98, 226, 1220
Sse9I	AATT	8 cut(s)	159, 461, 494, 649, 817, 881, 891, 1109
SsiI	CCGC	2 cut(s)	1180, 1215
SspMI	CTAG	1 cut(s)	1076
StyD4I	CCNGG	2 cut(s)	1027, 1189
StyI	CCWWGG	3 cut(s)	737, 1075, 1104
TaaI	ACNGT	2 cut(s)	698, 982
TaiI	ACGT	1 cut(s)	609
TaqI	TCGA	1 cut(s)	188
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	8 cut(s)	159, 461, 494, 649, 817, 881, 891, 1109
TfiI	GAWTC	3 cut(s)	431, 449, 770
Tru1I	TTAA	6 cut(s)	99, 128, 138, 939, 960, 998
Tru9I	TTAA	6 cut(s)	99, 128, 138, 939, 960, 998
TscAI	CASTG	3 cut(s)	448, 505, 985
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	1 cut(s)	1100
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	6 cut(s)	234, 315, 462, 741, 768, 873
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	3 cut(s)	448, 505, 985
Tth111I	GACNNNGTC	1 cut(s)	538
Vha464I	CTTAAG	1 cut(s)	98
VneI	GTGCAC	1 cut(s)	966
VpaK11BI	GGWCC	2 cut(s)	477, 534
XapI	RAATTY	4 cut(s)	494, 881, 891, 1109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmaJI	CCTAGG	1 cut(s)	1075
XmnI	GAANNNNTTC	1 cut(s)	1113
XspI	CTAG	1 cut(s)	1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.