Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8368661.1

Orthogroup ID

OG0004067

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1055

Gene Structure 1055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8368661.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 592 bp

atctaattcaaatggaaatatcacaagacctggcaaggatgagtctttagttactgaaactacaaaatatgaagcgaatttgaggaaggcttatgaagaacccgatcctgatgcctctatgtcaaatggcattattcagccagtatctagatctaatgataatttggtgcttccaaatgaaatatccagtatgcagatcgatgaaccagatccagatgatcaagaaattcaaataattcaagaccctgtttcagttgcttgtaaacgtatgcagaagaccattgagatgttgcaagctgaggttaatcccacacaagctaccacagtcctccaaactctatttaagataataaggaatgttcttgaacacccaggtgaatcgaaatacagaagactgcgcaaggctaatcccatgattcaaaagaatgtcacaaactacaaagctgccatggaatttctgtttctgattggcttcaatgaaaatgttgtggatgaaattggacgaccagaaacttatctagtgttgaagcgggatgatccggccttactgtggcttgccaagtcttccctggagacatgtattactgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0009987 GO:0016787 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0032446 GO:0033554 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070011 GO:0070628 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB WLM

Protein Analysis

196

Amino Acids

22.15

Weight (kDa)

4.89

Isoelectric Point (pI)

44.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35690
fragaria_vesca	FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820
malus_domestica	MD09G1117000.v1.1 MD17G1108500.v1.1
prunus_persica	Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1
pyrus_communis	pycom09g04190 pycom09g04200 pycom17g10100
rosa_chinensis	RchiOBHm_Chr2g0157621
rosa_laevigata	RLG00000021001 RLG00000021004
rosa_multiflora	Rmu_co8368661.1_g000001 Rmu_sc0000195.1_g000050 Rmu_sc0005255.1_g000015 Rmu_sc0006475.1_g000002 Rmu_sc0015282.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092080
rosa_rugosa	Rorug02G0462400
rosa_samantha	Rh2AG526500 Rh2BG541400 Rh2CG511200 Rh2DG549900
rosa_wichuraiana	Rw2G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	399
AciI	CCGC	1 cut(s)	530
AclWI	GGATC	3 cut(s)	99, 204, 531
AcsI	RAATTY	3 cut(s)	77, 226, 453
AfiI	CCNNNNNNNGG	1 cut(s)	550
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	7 cut(s)	10, 231, 240, 366, 420, 476, 527
AjnI	CCWGG	3 cut(s)	29, 371, 568
AleI	CACNNNNGTG	1 cut(s)	373
AluBI	AGCT	3 cut(s)	297, 318, 444
AluI	AGCT	3 cut(s)	297, 318, 444
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	3 cut(s)	99, 204, 531
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	1 cut(s)	444
ApoI	RAATTY	3 cut(s)	77, 226, 453
AspLEI	GCGC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	387
BbsI	GAAGAC	3 cut(s)	282, 398, 556
BbvCI	CCTCAGC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	93, 127
BciT130I	CCWGG	3 cut(s)	31, 373, 570
BclI	TGATCA	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	2 cut(s)	148, 519
BglII	AGATCT	1 cut(s)	150
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
Bme1390I	CCNGG	3 cut(s)	31, 373, 570
BmrFI	CCNGG	3 cut(s)	31, 373, 570
BmsI	GCATC	1 cut(s)	101
BpiI	GAAGAC	3 cut(s)	282, 398, 556
BpmI	CTGGAG	1 cut(s)	591
Bpu10I	CCTNAGC	1 cut(s)	298
Bsa29I	ATCGAT	1 cut(s)	199
BsaJI	CCNNGG	3 cut(s)	371, 448, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	550
Bse1I	ACTGG	2 cut(s)	141, 187
BseBI	CCWGG	3 cut(s)	31, 373, 570
BseCI	ATCGAT	1 cut(s)	199
BseDI	CCNNGG	3 cut(s)	371, 448, 568
BseGI	GGATG	3 cut(s)	44, 497, 539
BseLI	CCNNNNNNNGG	1 cut(s)	550
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	2 cut(s)	141, 187
BseXI	GCAGC	1 cut(s)	431
BshFI	GGCC	1 cut(s)	543
BshVI	ATCGAT	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	540
BslI	CCNNNNNNNGG	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	567
BsnI	GGCC	1 cut(s)	543
Bsp143I	GATC	6 cut(s)	104, 150, 196, 209, 218, 536
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	1 cut(s)	530
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	1 cut(s)	290
BspDI	ATCGAT	1 cut(s)	199
BspPI	GGATC	3 cut(s)	99, 204, 531
BsrI	ACTGG	2 cut(s)	141, 187
BssECI	CCNNGG	3 cut(s)	371, 448, 568
BssMI	GATC	6 cut(s)	104, 150, 196, 209, 218, 536
BssT1I	CCWWGG	1 cut(s)	448
Bst2UI	CCWGG	3 cut(s)	31, 373, 570
Bst4CI	ACNGT	3 cut(s)	326, 550, 587
BstC8I	GCNNGC	2 cut(s)	295, 556
BstDEI	CTNAG	1 cut(s)	298
BstDSI	CCRYGG	1 cut(s)	448
BstF5I	GGATG	3 cut(s)	44, 497, 539
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	6 cut(s)	107, 153, 199, 212, 221, 539
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	6 cut(s)	104, 150, 196, 209, 218, 536
BstNI	CCWGG	3 cut(s)	31, 373, 570
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	3 cut(s)	29, 371, 568
BstV1I	GCAGC	1 cut(s)	431
BstV2I	GAAGAC	3 cut(s)	282, 398, 556
BstX2I	RGATCY	2 cut(s)	150, 209
BstYI	RGATCY	2 cut(s)	150, 209
Bsu15I	ATCGAT	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	543
BsuTUI	ATCGAT	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	448
BtsCI	GGATG	3 cut(s)	44, 497, 539
Cac8I	GCNNGC	2 cut(s)	295, 556
CfoI	GCGC	1 cut(s)	400
ClaI	ATCGAT	1 cut(s)	199
CviAII	CATG	3 cut(s)	413, 449, 577
CviJI	RGCY	9 cut(s)	90, 140, 297, 318, 405, 444, 472, 543, 554
CviKI_1	RGCY	9 cut(s)	90, 140, 297, 318, 405, 444, 472, 543, 554
DdeI	CTNAG	1 cut(s)	298
DpnI	GATC	6 cut(s)	106, 152, 198, 211, 220, 538
DpnII	GATC	6 cut(s)	104, 150, 196, 209, 218, 536
Eco130I	CCWWGG	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	29, 371, 568
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	3 cut(s)	416, 452, 580
FaiI	YATR	8 cut(s)	70, 94, 120, 192, 270, 414, 450, 578
FatI	CATG	3 cut(s)	412, 448, 576
FauI	CCCGC	1 cut(s)	523
FbaI	TGATCA	1 cut(s)	218
Fnu4HI	GCNGC	1 cut(s)	445
FokI	GGATG	3 cut(s)	51, 504, 546
Fsp4HI	GCNGC	1 cut(s)	445
FspBI	CTAG	2 cut(s)	148, 519
FspI	TGCGCA	1 cut(s)	399
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	1 cut(s)	445
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	543
HapII	CCGG	1 cut(s)	540
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	3 cut(s)	416, 452, 580
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HinfI	GANTC	3 cut(s)	42, 378, 416
HpaII	CCGG	1 cut(s)	540
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	6 cut(s)	108, 148, 213, 222, 240, 363
Hpy8I	GTNNAC	1 cut(s)	264
HpyAV	CCTTC	1 cut(s)	80
HpyCH4III	ACNGT	3 cut(s)	326, 550, 587
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	3 cut(s)	194, 272, 293
HpyF3I	CTNAG	1 cut(s)	298
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	3 cut(s)	416, 452, 580
HspAI	GCGC	1 cut(s)	398
Ksp22I	TGATCA	1 cut(s)	218
Kzo9I	GATC	6 cut(s)	104, 150, 196, 209, 218, 536
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	2 cut(s)	148, 519
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	2 cut(s)	50, 428
MalI	GATC	6 cut(s)	106, 152, 198, 211, 220, 538
MboI	GATC	6 cut(s)	104, 150, 196, 209, 218, 536
MboII	GAAGA	4 cut(s)	108, 287, 403, 556
MflI	RGATCY	2 cut(s)	150, 209
MluCI	AATT	7 cut(s)	5, 77, 161, 226, 235, 453, 496
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	4 cut(s)	76, 125, 293, 339
MseI	TTAA	2 cut(s)	304, 343
MslI	CAYNNNNRTG	2 cut(s)	285, 373
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	3 cut(s)	31, 373, 570
MvaI	CCWGG	3 cut(s)	31, 373, 570
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	6 cut(s)	104, 150, 196, 209, 218, 536
NlaIII	CATG	3 cut(s)	416, 452, 580
NmuCI	GTSAC	1 cut(s)	428
NsbI	TGCGCA	1 cut(s)	399
NspI	RCATGY	1 cut(s)	580
OliI	CACNNNNGTG	1 cut(s)	373
PciI	ACATGT	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	378, 416
PkrI	GCNGC	1 cut(s)	446
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PscI	ACATGT	1 cut(s)	576
Psp6I	CCWGG	3 cut(s)	29, 371, 568
PspGI	CCWGG	3 cut(s)	29, 371, 568
PsuI	RGATCY	2 cut(s)	150, 209
RseI	CAYNNNNRTG	2 cut(s)	285, 373
SaqAI	TTAA	2 cut(s)	304, 343
SatI	GCNGC	1 cut(s)	445
Sau3AI	GATC	6 cut(s)	104, 150, 196, 209, 218, 536
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	3 cut(s)	31, 373, 570
SetI	ASST	7 cut(s)	32, 269, 299, 304, 320, 377, 446
SfaNI	GCATC	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	285, 373
Sse9I	AATT	7 cut(s)	5, 77, 161, 226, 235, 453, 496
SsiI	CCGC	1 cut(s)	530
SspMI	CTAG	2 cut(s)	148, 519
StyD4I	CCNGG	3 cut(s)	29, 371, 568
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	3 cut(s)	326, 550, 587
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	2 cut(s)	199, 381
TasI	AATT	7 cut(s)	5, 77, 161, 226, 235, 453, 496
TfiI	GAWTC	2 cut(s)	378, 416
Tru1I	TTAA	2 cut(s)	304, 343
Tru9I	TTAA	2 cut(s)	304, 343
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	1 cut(s)	444
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	6 cut(s)	85, 109, 193, 217, 493, 508
XapI	RAATTY	3 cut(s)	77, 226, 453
XbaI	TCTAGA	1 cut(s)	147
XceI	RCATGY	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	566
XspI	CTAG	2 cut(s)	148, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.