Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004067

Physical Location & Seq

Genomic Coordinates Reverse (-)

74942122 .. 74947250

Gene Structure 5129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG541400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGATTACTTGTCTGCAGTTGAACCCTCCAGCATCCGAGGCCCTGAAAATAATGCACATGCTTGCTGCAGATCCTGGAATTGTTGCTATCATGAACAAGCATCGCTGGCATGTGGGAATCATGACTGAGATGGCCCCGGTCGGTTATGTTGGCATAAGTCCCAAATGCCTTCTCGGCTTCAACAAGAATAAGGGAGAGGAGATATCTCTGCGTCTTCGAACTGATGACCTTAAGGGTTTCCGGAAGTATGCAAGTATCAAGAAAACTCTTCTGCATGAGCTTGCTCACATGATATACTCTGAACATGATGCAACCTTTTATGCTTTTGATAAACAGTTGAATCAAGAAGCTGAGAGTTTAGATTGGACGAGATCAAGAGGTCACACACTAAGCGGAGCTAGGTATACAGAGCATTATGAAAATTCCTATGTTGGAGAGAGAGGTAATTCTTCTCACAAGCTTGGAGGAAATAAGCCTGATCAACTGGCCAGTGCCCGAGCATCTTCAGTTGCTGCTGCTTATCATAGACTGGCAACTGCTTCTGATGATAGCATCTCCGAGGTACATGAACAGTCACATCTTGATGGTTTTGCGTTCCATGTGCATGAAAAAGACAAGCATAAGAACTTTTCAGGTAAAAGGGACTTGGAGATTGAAAGTTCTTACAAAGTTCAAGGGCAAAATGATCTGGAGCCTGACCCTGATGACTGTTTTGGCAATGAGAACAAGTTTGAGCCCAGTCTTGATGATTCTCAAGGAACTGATGAATCTTGCTCAAAATCTACAGGAAGCAGGAAAAATGTGGAACCTGATCCTGATAATCTCGAATCTTGTTTGAAGTGTGATATCATAGCTGAACCTGAACCCTTACACCCTCAGGAGATGGAGATTTTGGAAAGCAGGTTTCAACCAAGGAATAATGTAGACGAACCTGATCCTGATGATTGTGATGTAAAGCGGGATGATTTGGGATCTAATTCAAATGGAAATATCACAAGACCTGGCAAGGATGAGTCTTTAGTTACTGAAACTACAAAATATGAAGCGAATTTGAGGAAGGCTTATGAAGAACCCGATCCTGATGCCTCTATGTCAAATGGCATTATTCAGCCAGTATCTAGATCTAATGATAATTTGGTGCTTCCAAATGAAATATCCAGTATGCAGATCGATGAACCAGATCCAGATGATCAAGAAATTCAAATAATTCAAGACCCTGTTTCAGTTGCTTGTAAACGTATGCAGAAGACCATTGAGATGTTGCAAGCTGAGGTTAATCCCACACAAGCTACCACAGTCCTCCAAACTCTATTTAAGATAATAAGGTACAATAACTTAATTTTGAGCATTGATTCATTCCTTGTCTTCATGAACACACAAAAACTATCAGGACTGTACATAACTGTAACTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0009987 GO:0016787 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0032446 GO:0033554 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070011 GO:0070628 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB WLM

Protein Analysis

471

Amino Acids

52.79

Weight (kDa)

4.96

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WLM	PF08325	2 - 177	7.5e-49	WLM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35690
fragaria_vesca	FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820
malus_domestica	MD09G1117000.v1.1 MD17G1108500.v1.1
prunus_persica	Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1
pyrus_communis	pycom09g04190 pycom09g04200 pycom17g10100
rosa_chinensis	RchiOBHm_Chr2g0157621
rosa_laevigata	RLG00000021001 RLG00000021004
rosa_multiflora	Rmu_co8368661.1_g000001 Rmu_sc0000195.1_g000050 Rmu_sc0005255.1_g000015 Rmu_sc0006475.1_g000002 Rmu_sc0015282.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092080
rosa_rugosa	Rorug02G0462400
rosa_samantha	Rh2AG526500 Rh2BG541400 Rh2CG511200 Rh2DG549900
rosa_wichuraiana	Rw2G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	891
AccI	GTMKAC	2 cut(s)	404, 924
AccIII	TCCGGA	1 cut(s)	240
AciI	CCGC	2 cut(s)	393, 958
AclWI	GGATC	6 cut(s)	65, 806, 929, 979, 1070, 1175
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	3 cut(s)	421, 1048, 1197
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	3 cut(s)	564, 1328, 1397
AflII	CTTAAG	1 cut(s)	230
AjnI	CCWGG	2 cut(s)	73, 1000
AluBI	AGCT	7 cut(s)	280, 350, 398, 460, 854, 1268, 1289
AluI	AGCT	7 cut(s)	280, 350, 398, 460, 854, 1268, 1289
AlwI	GGATC	6 cut(s)	65, 806, 929, 979, 1070, 1175
AlwNI	CAGNNNCTG	2 cut(s)	74, 512
Ama87I	CYCGRG	1 cut(s)	495
Aor13HI	TCCGGA	1 cut(s)	240
AoxI	GGCC	3 cut(s)	39, 132, 486
ApeKI	GCWGC	3 cut(s)	65, 512, 515
ApoI	RAATTY	3 cut(s)	421, 1048, 1197
AspS9I	GGNCC	2 cut(s)	40, 133
AsuC2I	CCSGG	1 cut(s)	137
AsuII	TTCGAA	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	495
AxyI	CCTNAGG	1 cut(s)	876
BaeGI	GKGCMC	1 cut(s)	496
BalI	TGGCCA	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	738
BbsI	GAAGAC	3 cut(s)	206, 1253, 1357
BbvCI	CCTCAGC	1 cut(s)	1269
BbvI	GCAGC	3 cut(s)	52, 499, 502
BccI	CCATC	3 cut(s)	124, 578, 877
BcgI	CGANNNNNNTGC	2 cut(s)	1064, 1098
BciT130I	CCWGG	2 cut(s)	75, 1002
BclI	TGATCA	2 cut(s)	478, 1189
BcnI	CCSGG	1 cut(s)	137
BfaI	CTAG	2 cut(s)	399, 1119
BfmI	CTRYAG	3 cut(s)	14, 66, 783
BfrI	CTTAAG	1 cut(s)	230
BfuAI	ACCTGC	1 cut(s)	891
BglI	GCCNNNNNGGC	1 cut(s)	174
BglII	AGATCT	1 cut(s)	1121
BisI	GCNGC	3 cut(s)	66, 513, 516
BlsI	GCNGC	3 cut(s)	67, 514, 517
Bme1390I	CCNGG	3 cut(s)	75, 137, 1002
BmeT110I	CYCGRG	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	40, 133
BmiI	GGNNCC	3 cut(s)	135, 693, 807
BmrFI	CCNGG	3 cut(s)	75, 137, 1002
BmrI	ACTGGG	1 cut(s)	732
BmsI	GCATC	6 cut(s)	41, 109, 298, 509, 561, 1072
BmuI	ACTGGG	1 cut(s)	732
BpiI	GAAGAC	3 cut(s)	206, 1253, 1357
BpmI	CTGGAG	2 cut(s)	12, 710
Bpu10I	CCTNAGC	1 cut(s)	1269
Bpu14I	TTCGAA	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	738
BpuMI	CCSGG	1 cut(s)	137
Bsa29I	ATCGAT	1 cut(s)	1170
BsaJI	CCNNGG	4 cut(s)	36, 135, 558, 911
BsaWI	WCCGGW	1 cut(s)	240
Bse1I	ACTGG	6 cut(s)	489, 489, 534, 738, 1112, 1158
Bse21I	CCTNAGG	1 cut(s)	876
Bse3DI	GCAATG	1 cut(s)	724
BseAI	TCCGGA	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	75, 1002
BseCI	ATCGAT	1 cut(s)	1170
BseDI	CCNNGG	4 cut(s)	36, 135, 558, 911
BseGI	GGATG	3 cut(s)	32, 967, 1015
BseMI	GCAATG	1 cut(s)	724
BseMII	CTCAG	4 cut(s)	117, 342, 890, 1260
BseNI	ACTGG	6 cut(s)	489, 489, 534, 738, 1112, 1158
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	3 cut(s)	52, 499, 502
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	3 cut(s)	41, 134, 488
BshVI	ATCGAT	1 cut(s)	1170
BsiEI	CGRYCG	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	495
BsiSI	CCGG	2 cut(s)	137, 241
BslFI	GGGAC	2 cut(s)	144, 656
BsmFI	GGGAC	2 cut(s)	144, 656
BsnI	GGCC	3 cut(s)	41, 134, 488
BsoBI	CYCGRG	1 cut(s)	495
Bsp119I	TTCGAA	1 cut(s)	217
Bsp1286I	GDGCHC	2 cut(s)	496, 738
Bsp13I	TCCGGA	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	1395
BspACI	CCGC	2 cut(s)	393, 958
BspANI	GGCC	3 cut(s)	41, 134, 488
BspCNI	CTCAG	4 cut(s)	118, 343, 889, 1261
BspDI	ATCGAT	1 cut(s)	1170
BspEI	TCCGGA	1 cut(s)	240
BspHI	TCATGA	3 cut(s)	90, 120, 1368
BspLI	GGNNCC	3 cut(s)	135, 693, 807
BspMAI	CTGCAG	2 cut(s)	18, 70
BspMI	ACCTGC	1 cut(s)	891
BspPI	GGATC	6 cut(s)	65, 806, 929, 979, 1070, 1175
BspT104I	TTCGAA	1 cut(s)	217
BspTI	CTTAAG	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	724
BsrGI	TGTACA	1 cut(s)	1395
BsrI	ACTGG	6 cut(s)	489, 489, 534, 738, 1112, 1158
BssECI	CCNNGG	4 cut(s)	36, 135, 558, 911
BssNAI	GTATAC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	911
Bst1107I	GTATAC	1 cut(s)	405
Bst2UI	CCWGG	2 cut(s)	75, 1002
Bst4CI	ACNGT	6 cut(s)	336, 573, 710, 1297, 1395, 1405
Bst6I	CTCTTC	1 cut(s)	273
BstAFI	CTTAAG	1 cut(s)	230
BstAUI	TGTACA	1 cut(s)	1395
BstBI	TTCGAA	1 cut(s)	217
BstC8I	GCNNGC	4 cut(s)	63, 107, 282, 1266
BstDEI	CTNAG	5 cut(s)	126, 351, 389, 876, 1269
BstF5I	GGATG	3 cut(s)	32, 967, 1015
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 106, 174
BstNI	CCWGG	2 cut(s)	75, 1002
BstNSI	RCATGY	2 cut(s)	61, 113
BstSCI	CCNGG	3 cut(s)	73, 135, 1000
BstSFI	CTRYAG	3 cut(s)	14, 66, 783
BstSLI	GKGCMC	1 cut(s)	496
BstV1I	GCAGC	3 cut(s)	52, 499, 502
BstV2I	GAAGAC	3 cut(s)	206, 1253, 1357
BstX2I	RGATCY	4 cut(s)	70, 971, 1121, 1180
BstYI	RGATCY	4 cut(s)	70, 971, 1121, 1180
BstZ17I	GTATAC	1 cut(s)	405
Bsu15I	ATCGAT	1 cut(s)	1170
Bsu36I	CCTNAGG	1 cut(s)	876
BsuRI	GGCC	3 cut(s)	41, 134, 488
BsuTUI	ATCGAT	1 cut(s)	1170
BtgZI	GCGATG	1 cut(s)	86
BtsCI	GGATG	3 cut(s)	32, 967, 1015
BtsIMutI	CAGTG	1 cut(s)	496
BveI	ACCTGC	1 cut(s)	891
Cac8I	GCNNGC	4 cut(s)	63, 107, 282, 1266
CaiI	CAGNNNCTG	2 cut(s)	74, 512
CciI	TCATGA	3 cut(s)	90, 120, 1368
Cfr13I	GGNCC	2 cut(s)	40, 133
ClaI	ATCGAT	1 cut(s)	1170
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	3 cut(s)	563, 1327, 1396
CviQI	GTAC	3 cut(s)	563, 1327, 1396
DdeI	CTNAG	5 cut(s)	126, 351, 389, 876, 1269
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	911
Eco24I	GRGCYC	1 cut(s)	738
Eco32I	GATATC	2 cut(s)	204, 847
Eco57I	CTGAAG	1 cut(s)	489
Eco81I	CCTNAGG	1 cut(s)	876
Eco88I	CYCGRG	1 cut(s)	495
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	73, 1000
EcoRV	GATATC	2 cut(s)	204, 847
EcoT14I	CCWWGG	1 cut(s)	911
EcoT38I	GRGCYC	1 cut(s)	738
ErhI	CCWWGG	1 cut(s)	911
FaqI	GGGAC	2 cut(s)	144, 656
FauI	CCCGC	1 cut(s)	951
FbaI	TGATCA	2 cut(s)	478, 1189
FblI	GTMKAC	2 cut(s)	404, 924
Fnu4HI	GCNGC	3 cut(s)	66, 513, 516
FokI	GGATG	3 cut(s)	19, 974, 1022
FriOI	GRGCYC	1 cut(s)	738
Fsp4HI	GCNGC	3 cut(s)	66, 513, 516
FspBI	CTAG	2 cut(s)	399, 1119
GluI	GCNGC	3 cut(s)	66, 513, 516
GsuI	CTGGAG	2 cut(s)	12, 710
HaeIII	GGCC	3 cut(s)	41, 134, 488
HapII	CCGG	2 cut(s)	137, 241
HgaI	GACGC	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	7 cut(s)	117, 340, 749, 767, 827, 1013, 1352
HpaII	CCGG	2 cut(s)	137, 241
Hpy166II	GTNNAC	3 cut(s)	405, 925, 1235
Hpy188I	TCNGA	4 cut(s)	37, 301, 544, 559
Hpy8I	GTNNAC	3 cut(s)	405, 925, 1235
HpyAV	CCTTC	2 cut(s)	179, 1051
HpyCH4III	ACNGT	6 cut(s)	336, 573, 710, 1297, 1395, 1405
HpyCH4IV	ACGT	1 cut(s)	1237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 106, 174
HpyF3I	CTNAG	5 cut(s)	126, 351, 389, 876, 1269
HpySE526I	ACGT	1 cut(s)	1237
Kpn2I	TCCGGA	1 cut(s)	240
Ksp22I	TGATCA	2 cut(s)	478, 1189
LmnI	GCTCC	2 cut(s)	395, 691
Lsp1109I	GCAGC	3 cut(s)	52, 499, 502
LweI	GCATC	6 cut(s)	41, 109, 298, 509, 561, 1072
MaeI	CTAG	2 cut(s)	399, 1119
MaeII	ACGT	1 cut(s)	1237
MaeIII	GTNAC	4 cut(s)	380, 573, 1021, 1405
MboII	GAAGA	7 cut(s)	206, 260, 441, 495, 1079, 1258, 1357
MflI	RGATCY	4 cut(s)	70, 971, 1121, 1180
MhlI	GDGCHC	2 cut(s)	496, 738
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	9 cut(s)	78, 421, 445, 976, 1048, 1132, 1197, 1206, 1338
MluNI	TGGCCA	1 cut(s)	488
MlyI	GAGTC	1 cut(s)	1022
MmeI	TCCRAC	1 cut(s)	412
Mox20I	TGGCCA	1 cut(s)	488
MroI	TCCGGA	1 cut(s)	240
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	4 cut(s)	231, 1275, 1314, 1337
MslI	CAYNNNNRTG	3 cut(s)	582, 603, 1256
Msp20I	TGGCCA	1 cut(s)	488
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	2 cut(s)	137, 241
MspR9I	CCNGG	3 cut(s)	75, 137, 1002
MvaI	CCWGG	2 cut(s)	75, 1002
MwoI	GCNNNNNNNGC	3 cut(s)	38, 106, 174
NciI	CCSGG	1 cut(s)	137
NlaIV	GGNNCC	3 cut(s)	135, 693, 807
NmeAIII	GCCGAG	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	380, 573
NspI	RCATGY	2 cut(s)	61, 113
NspV	TTCGAA	1 cut(s)	217
PagI	TCATGA	3 cut(s)	90, 120, 1368
PfeI	GAWTC	6 cut(s)	117, 340, 749, 767, 827, 1352
PfoI	TCCNGGA	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	67, 514, 517
PleI	GAGTC	1 cut(s)	1021
PpsI	GAGTC	1 cut(s)	1021
Psp6I	CCWGG	2 cut(s)	73, 1000
PspGI	CCWGG	2 cut(s)	73, 1000
PspN4I	GGNNCC	3 cut(s)	135, 693, 807
PspPI	GGNCC	2 cut(s)	40, 133
PstI	CTGCAG	2 cut(s)	18, 70
PstNI	CAGNNNCTG	2 cut(s)	74, 512
PsuI	RGATCY	4 cut(s)	70, 971, 1121, 1180
RsaI	GTAC	3 cut(s)	564, 1328, 1397
RsaNI	GTAC	3 cut(s)	563, 1327, 1396
RseI	CAYNNNNRTG	3 cut(s)	582, 603, 1256
SaqAI	TTAA	4 cut(s)	231, 1275, 1314, 1337
SatI	GCNGC	3 cut(s)	66, 513, 516
Sau96I	GGNCC	2 cut(s)	40, 133
SchI	GAGTC	1 cut(s)	1022
ScrFI	CCNGG	3 cut(s)	75, 137, 1002
SduI	GDGCHC	2 cut(s)	496, 738
SfaNI	GCATC	6 cut(s)	41, 109, 298, 509, 561, 1072
SfcI	CTRYAG	3 cut(s)	14, 66, 783
SfuI	TTCGAA	1 cut(s)	217
SmiMI	CAYNNNNRTG	3 cut(s)	582, 603, 1256
SmlI	CTYRAG	2 cut(s)	230, 753
SmoI	CTYRAG	2 cut(s)	230, 753
Sse9I	AATT	9 cut(s)	78, 421, 445, 976, 1048, 1132, 1197, 1206, 1338
SsiI	CCGC	2 cut(s)	393, 958
SspMI	CTAG	2 cut(s)	399, 1119
StyD4I	CCNGG	3 cut(s)	73, 135, 1000
StyI	CCWWGG	1 cut(s)	911
TaaI	ACNGT	6 cut(s)	336, 573, 710, 1297, 1395, 1405
TaiI	ACGT	1 cut(s)	1240
TaqI	TCGA	3 cut(s)	217, 825, 1170
TasI	AATT	9 cut(s)	78, 421, 445, 976, 1048, 1132, 1197, 1206, 1338
TatI	WGTACW	1 cut(s)	1395
TfiI	GAWTC	6 cut(s)	117, 340, 749, 767, 827, 1352
Tru1I	TTAA	4 cut(s)	231, 1275, 1314, 1337
Tru9I	TTAA	4 cut(s)	231, 1275, 1314, 1337
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	2 cut(s)	380, 573
TseI	GCWGC	3 cut(s)	65, 512, 515
Tsp45I	GTSAC	2 cut(s)	380, 573
TspRI	CASTG	1 cut(s)	496
Vha464I	CTTAAG	1 cut(s)	230
XapI	RAATTY	3 cut(s)	421, 1048, 1197
XbaI	TCTAGA	1 cut(s)	1118
XceI	RCATGY	2 cut(s)	61, 113
XmiI	GTMKAC	2 cut(s)	404, 924
XspI	CTAG	2 cut(s)	399, 1119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.