Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004067

Physical Location & Seq

Genomic Coordinates Forward (+)

7795588 .. 7796761

Gene Structure 1174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAAGATCCACGAGTGGAGCACAATCTTTGGGTCTTATGGAGAGGAAAGAGGTTTGATGTGAAGATCCATTCGGGTGCCACTCTTAAGGATCTCGGGCACGAACTGCAGAAGTTGACGGATGTTAAAGCAGATACGATGAGGCTAATTGTTCCAAAGTTTTCCGATAAAAGCTCGAAAATGTTGTCTCCTTTCTCTGATGAGCATCGGAACTTGAGTTTACAGGAAGCTTCATTCGTTGAGGGAAAGTCCATCAGAATGATGGGAGTGTCTGAAAACGAGGTTGATGAAGTTTTACAAAATGCAAAGGCAAACTTGGAGGTTGGAAGTTCACACAAACTGCAGAAGAACCCTGATATGGAGCCTGATCCTGATGCCCTGTCTGACAATCAGAACAAGTTTGAGCCTAGTCCTCATGATTCTCAGGGCACTGATGAATTTGGAAAAGAATTCAGTGAGTCTATGATCTGTCAACCTGAGTTAGCAGGGACCGAGTCTCATGAAGAACCAGATCCTGATAATATGGATATTATGGAAAGCAGGGGGCAAGCAAGGAATAATGTGGACGAACCTGATCCTGATGCCGAGGATGCAAAAGCAGATAATTTAGGATATAGTTCCTGTAGAAATATCATAAGACCTAACCACGACAGTTCTTTGGTTACTGAAACCATCAAACGTGAAGACGATCCAAGGAAGGCTTATAATGAACCTGATCCTGATGATTCCCAGTCAAATGGAGTCACTCGGGCAGAGCCTGATCCTGATGCTAATATGGTGCATCCACAGAAAACATCCAGAATGCAGATTGATGAACCCGATCCAGATCGATCAAGAATTTCAAAGAATTCAAGACCCTGTTACAATCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0009987 GO:0016787 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0032446 GO:0033554 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070011 GO:0070628 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB WLM

Protein Analysis

292

Amino Acids

32.87

Weight (kDa)

4.71

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35690
fragaria_vesca	FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820
malus_domestica	MD09G1117000.v1.1 MD17G1108500.v1.1
prunus_persica	Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1
pyrus_communis	pycom09g04190 pycom09g04200 pycom17g10100
rosa_chinensis	RchiOBHm_Chr2g0157621
rosa_laevigata	RLG00000021001 RLG00000021004
rosa_multiflora	Rmu_co8368661.1_g000001 Rmu_sc0000195.1_g000050 Rmu_sc0005255.1_g000015 Rmu_sc0006475.1_g000002 Rmu_sc0015282.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092080
rosa_rugosa	Rorug02G0462400
rosa_samantha	Rh2AG526500 Rh2BG541400 Rh2CG511200 Rh2DG549900
rosa_wichuraiana	Rw2G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	705
AccB1I	GGYRCC	1 cut(s)	77
AcsI	RAATTY	4 cut(s)	437, 449, 837, 847
AfiI	CCNNNNNNNGG	1 cut(s)	358
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	2 cut(s)	843, 852
AluBI	AGCT	2 cut(s)	174, 230
AluI	AGCT	2 cut(s)	174, 230
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	192, 501
AlwNI	CAGNNNCTG	2 cut(s)	515, 758
Ama87I	CYCGRG	2 cut(s)	95, 747
ApoI	RAATTY	4 cut(s)	437, 449, 837, 847
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspS9I	GGNCC	1 cut(s)	489
AvaI	CYCGRG	2 cut(s)	95, 747
AvaII	GGWCC	1 cut(s)	489
BaeGI	GKGCMC	2 cut(s)	102, 431
BanI	GGYRCC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	24
BccI	CCATC	3 cut(s)	256, 260, 680
BcoDI	GTCTC	2 cut(s)	192, 501
BfaI	CTAG	1 cut(s)	408
BfmI	CTRYAG	3 cut(s)	107, 341, 622
BfrI	CTTAAG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	489
BmeT110I	CYCGRG	2 cut(s)	95, 747
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	3 cut(s)	79, 363, 490
BmrI	ACTGGG	1 cut(s)	724
BmsI	GCATC	6 cut(s)	214, 364, 571, 580, 757, 790
BmuI	ACTGGG	1 cut(s)	724
BpiI	GAAGAC	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	235
Bsa29I	ATCGAT	1 cut(s)	829
BsaBI	GATNNNNATC	2 cut(s)	204, 825
BsaJI	CCNNGG	2 cut(s)	585, 692
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse1I	ACTGG	1 cut(s)	730
Bse8I	GATNNNNATC	2 cut(s)	204, 825
BseCI	ATCGAT	1 cut(s)	829
BseDI	CCNNGG	2 cut(s)	585, 692
BseGI	GGATG	4 cut(s)	127, 595, 781, 794
BseJI	GATNNNNATC	2 cut(s)	204, 825
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	437, 468
BseNI	ACTGG	1 cut(s)	730
BseSI	GKGCMC	2 cut(s)	102, 431
BshNI	GGYRCC	1 cut(s)	77
BshVI	ATCGAT	1 cut(s)	829
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	2 cut(s)	95, 747
BslFI	GGGAC	1 cut(s)	502
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	2 cut(s)	192, 501
BsmFI	GGGAC	1 cut(s)	502
BsmI	GAATGC	1 cut(s)	807
BsoBI	CYCGRG	2 cut(s)	95, 747
Bsp1286I	GDGCHC	3 cut(s)	24, 102, 431
BspCNI	CTCAG	2 cut(s)	436, 469
BspDI	ATCGAT	1 cut(s)	829
BspHI	TCATGA	2 cut(s)	415, 499
BspLI	GGNNCC	3 cut(s)	79, 363, 490
BspMAI	CTGCAG	2 cut(s)	111, 345
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	730
BssECI	CCNNGG	2 cut(s)	585, 692
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	692
Bst2BI	CACGAG	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	653
BstAFI	CTTAAG	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	2 cut(s)	423, 477
BstF5I	GGATG	4 cut(s)	127, 595, 781, 794
BstMAI	GTCTC	2 cut(s)	192, 501
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 590
BstSFI	CTRYAG	3 cut(s)	107, 341, 622
BstSLI	GKGCMC	2 cut(s)	102, 431
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	4 cut(s)	7, 66, 91, 511
BstXI	CCANNNNNNTGG	1 cut(s)	737
BstYI	RGATCY	4 cut(s)	7, 66, 91, 511
Bsu15I	ATCGAT	1 cut(s)	829
BsuTUI	ATCGAT	1 cut(s)	829
BtsCI	GGATG	4 cut(s)	127, 595, 781, 794
BtsIMutI	CAGTG	2 cut(s)	429, 460
Cac8I	GCNNGC	1 cut(s)	549
CaiI	CAGNNNCTG	2 cut(s)	515, 758
CciI	TCATGA	2 cut(s)	415, 499
Cfr13I	GGNCC	1 cut(s)	489
ClaI	ATCGAT	1 cut(s)	829
CviAII	CATG	2 cut(s)	416, 500
CviJI	RGCY	7 cut(s)	145, 174, 230, 364, 406, 701, 757
CviKI_1	RGCY	7 cut(s)	145, 174, 230, 364, 406, 701, 757
DdeI	CTNAG	2 cut(s)	423, 477
Eco130I	CCWWGG	1 cut(s)	692
Eco47I	GGWCC	1 cut(s)	489
Eco88I	CYCGRG	2 cut(s)	95, 747
EcoRI	GAATTC	2 cut(s)	449, 847
EcoT14I	CCWWGG	1 cut(s)	692
ErhI	CCWWGG	1 cut(s)	692
FaeI	CATG	2 cut(s)	419, 503
FalI	AAGNNNNNCTT	4 cut(s)	299, 331, 685, 717
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	2 cut(s)	415, 499
FokI	GGATG	4 cut(s)	134, 602, 768, 781
FspBI	CTAG	1 cut(s)	408
Hin1II	CATG	2 cut(s)	419, 503
HincII	GTYRAC	2 cut(s)	117, 473
HindII	GTYRAC	2 cut(s)	117, 473
HindIII	AAGCTT	1 cut(s)	228
HinfI	GANTC	5 cut(s)	419, 458, 494, 725, 741
Hpy166II	GTNNAC	5 cut(s)	117, 221, 332, 473, 565
Hpy188I	TCNGA	7 cut(s)	166, 199, 210, 257, 274, 385, 393
Hpy8I	GTNNAC	5 cut(s)	117, 221, 332, 473, 565
HpyAV	CCTTC	1 cut(s)	691
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	6 cut(s)	109, 305, 343, 593, 781, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 590
HpyF3I	CTNAG	2 cut(s)	423, 477
HpySE526I	ACGT	1 cut(s)	679
Hsp92II	CATG	2 cut(s)	419, 503
LmnI	GCTCC	2 cut(s)	19, 361
LweI	GCATC	6 cut(s)	214, 364, 571, 580, 757, 790
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	679
MaeIII	GTNAC	3 cut(s)	661, 742, 860
MboII	GAAGA	5 cut(s)	17, 76, 358, 515, 695
MflI	RGATCY	4 cut(s)	7, 66, 91, 511
MhlI	GDGCHC	3 cut(s)	24, 102, 431
MluCI	AATT	6 cut(s)	147, 437, 449, 604, 837, 847
MlyI	GAGTC	3 cut(s)	467, 503, 750
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	8 cut(s)	38, 45, 135, 235, 274, 313, 423, 580
MseI	TTAA	2 cut(s)	87, 126
MslI	CAYNNNNRTG	2 cut(s)	75, 257
MspCI	CTTAAG	1 cut(s)	86
Mva1269I	GAATGC	1 cut(s)	807
MwoI	GCNNNNNNNGC	2 cut(s)	106, 590
NlaIII	CATG	2 cut(s)	419, 503
NlaIV	GGNNCC	3 cut(s)	79, 363, 490
NmeAIII	GCCGAG	1 cut(s)	610
NmuCI	GTSAC	1 cut(s)	742
PagI	TCATGA	2 cut(s)	415, 499
PctI	GAATGC	1 cut(s)	807
PfeI	GAWTC	2 cut(s)	419, 725
PflFI	GACNNNGTC	1 cut(s)	493
PleI	GAGTC	3 cut(s)	466, 502, 749
PpsI	GAGTC	3 cut(s)	466, 502, 749
PsiI	TTATAA	1 cut(s)	705
PspN4I	GGNNCC	3 cut(s)	79, 363, 490
PspPI	GGNCC	1 cut(s)	489
PstI	CTGCAG	2 cut(s)	111, 345
PstNI	CAGNNNCTG	2 cut(s)	515, 758
PsuI	RGATCY	4 cut(s)	7, 66, 91, 511
PsyI	GACNNNGTC	1 cut(s)	493
RseI	CAYNNNNRTG	2 cut(s)	75, 257
SaqAI	TTAA	2 cut(s)	87, 126
Sau96I	GGNCC	1 cut(s)	489
SchI	GAGTC	3 cut(s)	467, 503, 750
SduI	GDGCHC	3 cut(s)	24, 102, 431
SfaNI	GCATC	6 cut(s)	214, 364, 571, 580, 757, 790
SfcI	CTRYAG	3 cut(s)	107, 341, 622
SinI	GGWCC	1 cut(s)	489
SmiMI	CAYNNNNRTG	2 cut(s)	75, 257
SmlI	CTYRAG	2 cut(s)	86, 214
SmoI	CTYRAG	2 cut(s)	86, 214
Sse9I	AATT	6 cut(s)	147, 437, 449, 604, 837, 847
SspMI	CTAG	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	1 cut(s)	653
TaiI	ACGT	1 cut(s)	682
TaqI	TCGA	2 cut(s)	176, 829
TaqII	GACCGA	1 cut(s)	506
TasI	AATT	6 cut(s)	147, 437, 449, 604, 837, 847
TfiI	GAWTC	2 cut(s)	419, 725
Tru1I	TTAA	2 cut(s)	87, 126
Tru9I	TTAA	2 cut(s)	87, 126
TscAI	CASTG	2 cut(s)	436, 460
TseFI	GTSAC	1 cut(s)	742
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	6 cut(s)	222, 303, 450, 516, 723, 828
TspGWI	ACGGA	1 cut(s)	134
TspRI	CASTG	2 cut(s)	436, 460
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	4 cut(s)	437, 449, 837, 847
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.