RLG00000021004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004067
Physical Location & Seq
Reverse (-)
70989152 .. 70990158
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021004

Sequence Viewer

Length: 387 bp
ATGACTACTGCCTCCAAAACAACGACAAAGAGAAGCAGTACTGCTACTGTTTTCTGGGTAGCCGTTGTCGTGGTGATTATGTTGTCGATTGTGGTTGAAGCAGTAGAGGCGGGGAGGCCGGACCTGCGTCTGAAGAGTGCAGATGATGACGACGACGATGATGATAACTATGAGATCAATAGCAAGCACTACATTAACAATAAGGTTAATACCGTTATTAAACGAGGACGTCTGAACTTGTCTATCACTTTAGAAGGTGAATTATTGCTGCAAGGGGATGCAACAGGGTTGAGAGGTGGTCGAGGTGAGACTGGTGGCGGCGGATTTGGGGTGGAGAAAAGGGAAAAGAAAAGGATTATTGGTGGAGGATCGAAATGTGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.83

Weight (kDa)

6.59

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 232
Acc36I ACCTGC 1 cut(s) 132
AciI CCGC 3 cut(s) 110, 318, 321
AclWI GGATC 1 cut(s) 376
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 1 cut(s) 152
AcyI GRCGYC 1 cut(s) 229
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 1 cut(s) 98
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 376
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 380
AspS9I GGNCC 1 cut(s) 121
AsuHPI GGTGA 3 cut(s) 85, 269, 317
AvaII GGWCC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 255
BceAI ACGGC 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 132
BisI GCNGC 2 cut(s) 269, 319
BlsI GCNGC 2 cut(s) 270, 320
BmcAI AGTACT 1 cut(s) 40
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmsI GCATC 1 cut(s) 268
BoxI GACNNNNGTC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 316
BseGI GGATG 1 cut(s) 283
BseNI ACTGG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 159
BshFI GGCC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 118
Bsp143I GATC 2 cut(s) 174, 368
BspACI CCGC 3 cut(s) 110, 318, 321
BspANI GGCC 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 132
BspPI GGATC 1 cut(s) 376
BsrI ACTGG 1 cut(s) 316
BssMI GATC 2 cut(s) 174, 368
BssNI GRCGYC 1 cut(s) 229
Bst4CI ACNGT 2 cut(s) 49, 214
Bst6I CTCTTC 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 185
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 2 cut(s) 177, 371
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 2 cut(s) 174, 368
BstMWI GCNNNNNNNGC 2 cut(s) 107, 124
BstPAI GACNNNNGTC 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 255
BsuRI GGCC 1 cut(s) 118
BtsCI GGATG 1 cut(s) 283
BveI ACCTGC 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 121
CseI GACGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 39
CviJI RGCY 2 cut(s) 62, 118
CviKI_1 RGCY 2 cut(s) 62, 118
CviQI GTAC 1 cut(s) 39
DpnI GATC 2 cut(s) 176, 370
DpnII GATC 2 cut(s) 174, 368
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
EciI GGCGGA 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 152
FaiI YATR 2 cut(s) 80, 171
FauI CCCGC 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 269, 319
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 269, 319
GluI GCNGC 2 cut(s) 269, 319
HaeIII GGCC 1 cut(s) 118
HapII CCGG 1 cut(s) 119
HgaI GACGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 229
HpaII CCGG 1 cut(s) 119
HphI GGTGA 3 cut(s) 85, 269, 317
Hpy188I TCNGA 2 cut(s) 132, 234
Hpy99I CGWCG 2 cut(s) 155, 158
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 2 cut(s) 49, 214
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 140, 271, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 124
HpySE526I ACGT 1 cut(s) 229
Hsp92I GRCGYC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 174, 368
LpnPI CCDG 5 cut(s) 40, 132, 137, 270, 297
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 268
MaeII ACGT 1 cut(s) 229
MalI GATC 2 cut(s) 176, 370
MboI GATC 2 cut(s) 174, 368
MboII GAAGA 1 cut(s) 145
MluCI AATT 2 cut(s) 260, 380
MnlI CCTC 7 cut(s) 22, 100, 108, 218, 287, 296, 359
MseI TTAA 3 cut(s) 195, 207, 219
MspI CCGG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 107, 124
NdeII GATC 2 cut(s) 174, 368
PkrI GCNGC 2 cut(s) 270, 320
PshAI GACNNNNGTC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 121
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SaqAI TTAA 3 cut(s) 195, 207, 219
SatI GCNGC 2 cut(s) 269, 319
Sau3AI GATC 2 cut(s) 174, 368
Sau96I GGNCC 1 cut(s) 121
ScaI AGTACT 1 cut(s) 40
SetI ASST 6 cut(s) 126, 207, 232, 259, 298, 307
SfaNI GCATC 1 cut(s) 268
SinI GGWCC 1 cut(s) 121
Sse9I AATT 2 cut(s) 260, 380
SsiI CCGC 3 cut(s) 110, 318, 321
TaaI ACNGT 2 cut(s) 49, 214
TaiI ACGT 1 cut(s) 232
TaqI TCGA 3 cut(s) 86, 301, 371
TasI AATT 2 cut(s) 260, 380
TatI WGTACW 1 cut(s) 38
TauI GCSGC 1 cut(s) 321
Tru1I TTAA 3 cut(s) 195, 207, 219
Tru9I TTAA 3 cut(s) 195, 207, 219
TseI GCWGC 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 380
ZraI GACGTC 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.