Rorug02G0462400

WLM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004067
Physical Location & Seq
Reverse (-)
59380795 .. 59381124
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0462400.1

Sequence Viewer

Length: 330 bp
ATGGTAACATGCGCCGCAACTGGGCTAGCGCTTCAGGCACCACCTCCCCTCTTTAACATTCCAGGCCTATTGCCGCCAGGGTTCCCCGGCCTACTGCCGCCAACAAACCCAAATGACATAGCAAAGTGTTGGTCTTCACTTCAGAACATTCAAGGGTGTGTATCGGAAATCTTTACCTCAATCTTTACTCACAAAATAGAAGTAAGCCCTGCCTGTTGTAAAGCTTTCCTTGCAATTGAAGAGAGTTGCTGGCCGAAAATGTTCCCCTTAACTCCTTTCTCTGCTCCATTGCTCAAGAACACTTGTGCCCAGAAGGCAGCTCTTGTTTAA

Protein Analysis

109

Amino Acids

11.6

Weight (kDa)

7.54

Isoelectric Point (pI)

77.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 42 - 102 9e-18 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AciI CCGC 3 cut(s) 15, 74, 98
AcoI YGGCCR 1 cut(s) 251
AcuI CTGAAG 2 cut(s) 17, 125
AfeI AGCGCT 1 cut(s) 30
AfiI CCNNNNNNNGG 1 cut(s) 21
AgsI TTSAA 2 cut(s) 152, 239
AjnI CCWGG 2 cut(s) 61, 76
AluBI AGCT 2 cut(s) 224, 320
AluI AGCT 2 cut(s) 224, 320
Aor51HI AGCGCT 1 cut(s) 30
AoxI GGCC 3 cut(s) 64, 88, 251
ApeKI GCWGC 1 cut(s) 317
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 14, 31
AsuC2I CCSGG 1 cut(s) 87
AsuNHI GCTAGC 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 310
BanI GGYRCC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 126
BciT130I CCWGG 2 cut(s) 63, 78
BcnI CCSGG 1 cut(s) 87
BfaI CTAG 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 32
BglI GCCNNNNNGGC 1 cut(s) 314
BisI GCNGC 4 cut(s) 15, 74, 98, 318
BlsI GCNGC 4 cut(s) 16, 75, 99, 319
Bme1390I CCNGG 3 cut(s) 63, 78, 87
BmiI GGNNCC 2 cut(s) 39, 83
BmrFI CCNGG 3 cut(s) 63, 78, 87
BmrI ACTGGG 1 cut(s) 30
BmtI GCTAGC 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 30
BpiI GAAGAC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 87
BsaJI CCNNGG 2 cut(s) 77, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 287
BseBI CCWGG 2 cut(s) 63, 78
BseDI CCNNGG 2 cut(s) 77, 85
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMI GCAATG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 310
BshFI GGCC 3 cut(s) 66, 90, 253
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 21
BsnI GGCC 3 cut(s) 66, 90, 253
Bsp1286I GDGCHC 1 cut(s) 310
BspACI CCGC 3 cut(s) 15, 74, 98
BspANI GGCC 3 cut(s) 66, 90, 253
BspLI GGNNCC 2 cut(s) 39, 83
BspOI GCTAGC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 287
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 77, 85
Bst2UI CCWGG 2 cut(s) 63, 78
Bst6I CTCTTC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 27, 251
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 2 cut(s) 14, 31
BstMWI GCNNNNNNNGC 3 cut(s) 35, 230, 314
BstNI CCWGG 2 cut(s) 63, 78
BstNSI RCATGY 1 cut(s) 12
BstSCI CCNGG 3 cut(s) 61, 76, 85
BstSLI GKGCMC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 126
BsuRI GGCC 3 cut(s) 66, 90, 253
Cac8I GCNNGC 2 cut(s) 27, 251
CfoI GCGC 2 cut(s) 14, 31
CviAII CATG 1 cut(s) 9
CviJI RGCY 7 cut(s) 25, 66, 90, 207, 224, 253, 320
CviKI_1 RGCY 7 cut(s) 25, 66, 90, 207, 224, 253, 320
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco147I AGGCCT 1 cut(s) 66
Eco47III AGCGCT 1 cut(s) 30
Eco57I CTGAAG 2 cut(s) 17, 125
EcoRII CCWGG 2 cut(s) 61, 76
FaeI CATG 1 cut(s) 12
FaiI YATR 2 cut(s) 10, 119
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 1 cut(s) 8
Fnu4HI GCNGC 4 cut(s) 15, 74, 98, 318
Fsp4HI GCNGC 4 cut(s) 15, 74, 98, 318
FspBI CTAG 1 cut(s) 26
GlaI GCGC 2 cut(s) 13, 30
GluI GCNGC 4 cut(s) 15, 74, 98, 318
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 3 cut(s) 66, 90, 253
HapII CCGG 1 cut(s) 87
HhaI GCGC 2 cut(s) 14, 31
Hin1II CATG 1 cut(s) 12
Hin6I GCGC 2 cut(s) 12, 29
HinP1I GCGC 2 cut(s) 12, 29
HindIII AAGCTT 1 cut(s) 222
HpaII CCGG 1 cut(s) 87
Hpy188I TCNGA 2 cut(s) 144, 166
Hpy188III TCNNGA 1 cut(s) 295
HpyAV CCTTC 1 cut(s) 307
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 230, 314
Hsp92II CATG 1 cut(s) 12
HspAI GCGC 2 cut(s) 12, 29
LmnI GCTCC 1 cut(s) 289
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 4
MboII GAAGA 2 cut(s) 126, 251
MfeI CAATTG 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 1 cut(s) 234
MnlI CCTC 3 cut(s) 54, 59, 187
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 3 cut(s) 54, 269, 328
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 3 cut(s) 63, 78, 87
MunI CAATTG 1 cut(s) 234
MvaI CCWGG 2 cut(s) 63, 78
MwoI GCNNNNNNNGC 3 cut(s) 35, 230, 314
NciI CCSGG 1 cut(s) 87
NheI GCTAGC 1 cut(s) 25
NlaIII CATG 1 cut(s) 12
NlaIV GGNNCC 2 cut(s) 39, 83
NspI RCATGY 1 cut(s) 12
PceI AGGCCT 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 260
PkrI GCNGC 4 cut(s) 16, 75, 99, 319
Psp6I CCWGG 2 cut(s) 61, 76
PspGI CCWGG 2 cut(s) 61, 76
PspN4I GGNNCC 2 cut(s) 39, 83
SaqAI TTAA 3 cut(s) 54, 269, 328
SatI GCNGC 4 cut(s) 15, 74, 98, 318
ScrFI CCNGG 3 cut(s) 63, 78, 87
SduI GDGCHC 1 cut(s) 310
SetI ASST 4 cut(s) 46, 179, 226, 322
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
Sse9I AATT 1 cut(s) 234
SseBI AGGCCT 1 cut(s) 66
SsiI CCGC 3 cut(s) 15, 74, 98
SspMI CTAG 1 cut(s) 26
StuI AGGCCT 1 cut(s) 66
StyD4I CCNGG 3 cut(s) 61, 76, 85
TasI AATT 1 cut(s) 234
TauI GCSGC 3 cut(s) 17, 76, 100
Tru1I TTAA 3 cut(s) 54, 269, 328
Tru9I TTAA 3 cut(s) 54, 269, 328
TseI GCWGC 1 cut(s) 317
XceI RCATGY 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.