Rw2G043610

WLM domain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
70068451 .. 70073380
4930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G043610.1

Sequence Viewer

Length: 1635 bp
ATGTCTGATAGGCCTCATACTTCCCTGAAACTTCCACAAGGACCTTATATCTTTAGTGATTTCCGCACACTTCAACTTCCAGGAATTGAGTTGAACCCTCCAGCATCCGAGGCCCTGAAAATAATGCACATGCTTGCTGCAGATCCTGGAATTGTTGCTATCATGAACAAGCATCGCTGGCATGTGGGAATCATGACTGAGATGGCCCCGGTCGGTTATGTTGGCATAAGTCCCAAATGCCTTCTCGGCTTCAACAAGAATAAGGGAGAGGAGATATCTCTGCGTCTTCGAACTGATGACCTTAAGGGTTTCCGGAAGTATGCAAGTATCAAGAAAACTCTTCTGCATGAGCTTGCTCACATGATATACTCTGAACATGATGCAACCTTTTATGCTTTTGATAAACAGTTGAATCAAGAAGCTGAGAGTTTAGATTGGACGAGATCAAGAGGTCACACACTAAGCGGAGCTAGGTATACAGAGCATTATGAAAATTCCTATGTTGGAGAGAGAGGTAATTCTTCTCACAAGCTTGGAGGAAATAAGCCTGATCAACTGGCCAGTGCCCGAGCATCTTCAGTTGCTGCTGCTTATCATAGACTGGCAACTGCTTCTGATGATAGCATCTCCGAGGTACATGAACAGTCACATCTTGATGGTTTTGCGTTCCATGTGCATGAAAAAGACAAGCATAAGAACTTTTCAGGTAAAAGGGACTTGGAGATTGAAAGTTCTTACAAAGTTCAAGGGCAAAATGATCTGGAGCCTGACCCTGATGACTGTTTTGGCAATGAGAACAAGTTTGAGCCCAGTCTTGATGATTCTCAAGGAACTGATGAATCTTGCTCAAAATCTACAGGAAGCAGGAAAAATGTGGAACCTGATCCTGATAATCTCGAATCTTGTTTGAAGTGTGATATCATAGCTGAACCTGAACCCTTACACCCTCAGGAGATGGAGATTTTGGAAAGCAGGTTTCAACCAAGGAATAATGTAGACGAACCTGATCCTGATGATTGTGATGTAAAGCGGGATGATTTGGGATCTAATTCGAATGGAAATATCACAAGACCTGGCAAGGATGAGTCTTTAGTTACTGAAACTACAAAATATGAAGCGAATTTGAGGAAGGCTTATGAAGAACCCGATCCTGATGCCTCTATGTCAAATGGCATTATTCAGCCAGTATCTAGATCTAATGATAATTTGGTGCTTCCAAATGAAATATCCAGTATGCAGATCGATGAACCAGATCCAGATGATCAAGAAATTCAAATAATTCAAGACCCTGTTTCAGTTGCTTGTAAACGTATGCAGAAGACCATTGAGATGTTGCAAGCTGAGGTTAATCCCACACAAGCTACCACAGTCCTCCAAACTCTATTTAAGATAATAAGGAATGTTCTTGAACACCCAGGTGAATCGAAATACAGAAGACTGCGCAAGGCTAATCCCATGATTCAAAAGAATGTCGCAAACTACAAAGCTGCCATGGAATTTCTGTTTCTGATTGGCTTCAATGAAAATGTTGTGGATGAAATTGGACGACCAGAAACTTATCTAGTGTTGAAGCGGGATGATCCGGCCTTACTGTGGCTTGCCAAGTCTTCCCTGGAGACATGTATTACTGTTTAG

Protein Analysis

544

Amino Acids

61.18

Weight (kDa)

5.13

Isoelectric Point (pI)

49.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WLM PF08325 30 - 201 3.3e-48 WLM domain
PUB PF09409 453 - 531 6.6e-19 PUB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1442
Acc36I ACCTGC 1 cut(s) 963
AccI GTMKAC 2 cut(s) 476, 996
AccIII TCCGGA 1 cut(s) 312
AciI CCGC 4 cut(s) 64, 465, 1030, 1573
AclWI GGATC 7 cut(s) 137, 878, 1001, 1051, 1142, 1247, 1574
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 4 cut(s) 493, 1120, 1269, 1496
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 1 cut(s) 636
AfiI CCNNNNNNNGG 1 cut(s) 1593
AflII CTTAAG 1 cut(s) 302
AflIII ACRYGT 1 cut(s) 1619
AjnI CCWGG 5 cut(s) 79, 145, 1072, 1414, 1611
AleI CACNNNNGTG 1 cut(s) 1416
AluBI AGCT 8 cut(s) 352, 422, 470, 532, 926, 1340, 1361, 1487
AluI AGCT 8 cut(s) 352, 422, 470, 532, 926, 1340, 1361, 1487
Alw26I GTCTC 1 cut(s) 1610
AlwI GGATC 7 cut(s) 137, 878, 1001, 1051, 1142, 1247, 1574
AlwNI CAGNNNCTG 2 cut(s) 146, 584
Ama87I CYCGRG 1 cut(s) 567
Aor13HI TCCGGA 1 cut(s) 312
AoxI GGCC 5 cut(s) 11, 111, 204, 558, 1584
ApeKI GCWGC 4 cut(s) 137, 584, 587, 1487
ApoI RAATTY 4 cut(s) 493, 1120, 1269, 1496
AspLEI GCGC 1 cut(s) 1443
AspS9I GGNCC 3 cut(s) 41, 112, 205
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 1 cut(s) 1430
AsuII TTCGAA 2 cut(s) 289, 1052
AvaI CYCGRG 1 cut(s) 567
AvaII GGWCC 1 cut(s) 41
AxyI CCTNAGG 1 cut(s) 948
BaeGI GKGCMC 1 cut(s) 568
BalI TGGCCA 1 cut(s) 560
BanII GRGCYC 1 cut(s) 810
BbsI GAAGAC 4 cut(s) 278, 1325, 1441, 1599
BbvCI CCTCAGC 1 cut(s) 1341
BbvI GCAGC 4 cut(s) 124, 571, 574, 1474
BccI CCATC 3 cut(s) 196, 650, 949
BcgI CGANNNNNNTGC 2 cut(s) 1136, 1170
BciT130I CCWGG 5 cut(s) 81, 147, 1074, 1416, 1613
BclI TGATCA 2 cut(s) 550, 1261
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 1610
BfaI CTAG 3 cut(s) 471, 1191, 1562
BfmI CTRYAG 2 cut(s) 138, 855
BfrI CTTAAG 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 963
BglI GCCNNNNNGGC 1 cut(s) 246
BglII AGATCT 1 cut(s) 1193
BisI GCNGC 4 cut(s) 138, 585, 588, 1488
BlsI GCNGC 4 cut(s) 139, 586, 589, 1489
Bme1390I CCNGG 6 cut(s) 81, 147, 209, 1074, 1416, 1613
Bme18I GGWCC 1 cut(s) 41
BmeT110I CYCGRG 1 cut(s) 567
BmgT120I GGNCC 3 cut(s) 41, 112, 205
BmiI GGNNCC 3 cut(s) 207, 765, 879
BmrFI CCNGG 6 cut(s) 81, 147, 209, 1074, 1416, 1613
BmrI ACTGGG 1 cut(s) 804
BmsI GCATC 6 cut(s) 113, 181, 370, 581, 633, 1144
BmuI ACTGGG 1 cut(s) 804
BpiI GAAGAC 4 cut(s) 278, 1325, 1441, 1599
BpmI CTGGAG 3 cut(s) 84, 782, 1634
Bpu10I CCTNAGC 1 cut(s) 1341
Bpu14I TTCGAA 2 cut(s) 289, 1052
BpuEI CTTGAG 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 209
Bsa29I ATCGAT 1 cut(s) 1242
BsaJI CCNNGG 7 cut(s) 108, 207, 630, 983, 1414, 1491, 1611
BsaWI WCCGGW 1 cut(s) 312
Bsc4I CCNNNNNNNGG 1 cut(s) 1593
Bse1I ACTGG 6 cut(s) 561, 561, 606, 810, 1184, 1230
Bse21I CCTNAGG 1 cut(s) 948
Bse3DI GCAATG 1 cut(s) 796
BseAI TCCGGA 1 cut(s) 312
BseBI CCWGG 5 cut(s) 81, 147, 1074, 1416, 1613
BseCI ATCGAT 1 cut(s) 1242
BseDI CCNNGG 7 cut(s) 108, 207, 630, 983, 1414, 1491, 1611
BseGI GGATG 5 cut(s) 104, 1039, 1087, 1540, 1582
BseLI CCNNNNNNNGG 1 cut(s) 1593
BseMI GCAATG 1 cut(s) 796
BseMII CTCAG 4 cut(s) 189, 414, 962, 1332
BseNI ACTGG 6 cut(s) 561, 561, 606, 810, 1184, 1230
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 4 cut(s) 124, 571, 574, 1474
Bsh1285I CGRYCG 1 cut(s) 213
BshFI GGCC 5 cut(s) 13, 113, 206, 560, 1586
BshVI ATCGAT 1 cut(s) 1242
BsiEI CGRYCG 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 567
BsiSI CCGG 3 cut(s) 209, 313, 1583
BslFI GGGAC 2 cut(s) 216, 728
BslI CCNNNNNNNGG 1 cut(s) 1593
BsmAI GTCTC 1 cut(s) 1610
BsmFI GGGAC 2 cut(s) 216, 728
BsnI GGCC 5 cut(s) 13, 113, 206, 560, 1586
BsoBI CYCGRG 1 cut(s) 567
Bsp119I TTCGAA 2 cut(s) 289, 1052
Bsp1286I GDGCHC 2 cut(s) 568, 810
Bsp13I TCCGGA 1 cut(s) 312
Bsp19I CCATGG 1 cut(s) 1491
BspACI CCGC 4 cut(s) 64, 465, 1030, 1573
BspANI GGCC 5 cut(s) 13, 113, 206, 560, 1586
BspCNI CTCAG 4 cut(s) 190, 415, 961, 1333
BspDI ATCGAT 1 cut(s) 1242
BspEI TCCGGA 1 cut(s) 312
BspHI TCATGA 2 cut(s) 162, 192
BspLI GGNNCC 3 cut(s) 207, 765, 879
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 963
BspPI GGATC 7 cut(s) 137, 878, 1001, 1051, 1142, 1247, 1574
BspT104I TTCGAA 2 cut(s) 289, 1052
BspTI CTTAAG 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 796
BsrI ACTGG 6 cut(s) 561, 561, 606, 810, 1184, 1230
BssECI CCNNGG 7 cut(s) 108, 207, 630, 983, 1414, 1491, 1611
BssNAI GTATAC 1 cut(s) 477
BssT1I CCWWGG 2 cut(s) 983, 1491
Bst1107I GTATAC 1 cut(s) 477
Bst2UI CCWGG 5 cut(s) 81, 147, 1074, 1416, 1613
Bst4CI ACNGT 6 cut(s) 408, 645, 782, 1369, 1593, 1630
Bst6I CTCTTC 1 cut(s) 345
BstAFI CTTAAG 1 cut(s) 302
BstBI TTCGAA 2 cut(s) 289, 1052
BstC8I GCNNGC 5 cut(s) 135, 179, 354, 1338, 1599
BstDEI CTNAG 5 cut(s) 198, 423, 461, 948, 1341
BstDSI CCRYGG 1 cut(s) 1491
BstF5I GGATG 5 cut(s) 104, 1039, 1087, 1540, 1582
BstHHI GCGC 1 cut(s) 1443
BstMAI GTCTC 1 cut(s) 1610
BstMCI CGRYCG 1 cut(s) 213
BstMWI GCNNNNNNNGC 3 cut(s) 110, 178, 246
BstNI CCWGG 5 cut(s) 81, 147, 1074, 1416, 1613
BstNSI RCATGY 3 cut(s) 133, 185, 1623
BstSCI CCNGG 6 cut(s) 79, 145, 207, 1072, 1414, 1611
BstSFI CTRYAG 2 cut(s) 138, 855
BstSLI GKGCMC 1 cut(s) 568
BstV1I GCAGC 4 cut(s) 124, 571, 574, 1474
BstV2I GAAGAC 4 cut(s) 278, 1325, 1441, 1599
BstX2I RGATCY 4 cut(s) 142, 1043, 1193, 1252
BstYI RGATCY 4 cut(s) 142, 1043, 1193, 1252
BstZ17I GTATAC 1 cut(s) 477
Bsu15I ATCGAT 1 cut(s) 1242
Bsu36I CCTNAGG 1 cut(s) 948
BsuRI GGCC 5 cut(s) 13, 113, 206, 560, 1586
BsuTUI ATCGAT 1 cut(s) 1242
BtgI CCRYGG 1 cut(s) 1491
BtgZI GCGATG 1 cut(s) 158
BtsCI GGATG 5 cut(s) 104, 1039, 1087, 1540, 1582
BtsIMutI CAGTG 1 cut(s) 568
BveI ACCTGC 1 cut(s) 963
Cac8I GCNNGC 5 cut(s) 135, 179, 354, 1338, 1599
CaiI CAGNNNCTG 2 cut(s) 146, 584
CciI TCATGA 2 cut(s) 162, 192
CfoI GCGC 1 cut(s) 1443
Cfr13I GGNCC 3 cut(s) 41, 112, 205
ClaI ATCGAT 1 cut(s) 1242
CseI GACGC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 635
CviQI GTAC 1 cut(s) 635
DdeI CTNAG 5 cut(s) 198, 423, 461, 948, 1341
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco130I CCWWGG 2 cut(s) 983, 1491
Eco147I AGGCCT 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 810
Eco32I GATATC 2 cut(s) 276, 919
Eco47I GGWCC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 561
Eco81I CCTNAGG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 567
EcoO109I RGGNCCY 2 cut(s) 41, 112
EcoRII CCWGG 5 cut(s) 79, 145, 1072, 1414, 1611
EcoRV GATATC 2 cut(s) 276, 919
EcoT14I CCWWGG 2 cut(s) 983, 1491
EcoT38I GRGCYC 1 cut(s) 810
ErhI CCWWGG 2 cut(s) 983, 1491
FaqI GGGAC 2 cut(s) 216, 728
FauI CCCGC 2 cut(s) 1023, 1566
FbaI TGATCA 2 cut(s) 550, 1261
FblI GTMKAC 2 cut(s) 476, 996
Fnu4HI GCNGC 4 cut(s) 138, 585, 588, 1488
FokI GGATG 5 cut(s) 91, 1046, 1094, 1547, 1589
FriOI GRGCYC 1 cut(s) 810
Fsp4HI GCNGC 4 cut(s) 138, 585, 588, 1488
FspBI CTAG 3 cut(s) 471, 1191, 1562
FspI TGCGCA 1 cut(s) 1442
GlaI GCGC 1 cut(s) 1442
GluI GCNGC 4 cut(s) 138, 585, 588, 1488
GsuI CTGGAG 3 cut(s) 84, 782, 1634
HaeIII GGCC 5 cut(s) 13, 113, 206, 560, 1586
HapII CCGG 3 cut(s) 209, 313, 1583
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 1443
Hin6I GCGC 1 cut(s) 1441
HinP1I GCGC 1 cut(s) 1441
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 8 cut(s) 189, 412, 821, 839, 899, 1085, 1421, 1459
HpaII CCGG 3 cut(s) 209, 313, 1583
HphI GGTGA 1 cut(s) 1430
Hpy166II GTNNAC 3 cut(s) 477, 997, 1307
Hpy188I TCNGA 6 cut(s) 7, 109, 373, 616, 631, 1509
Hpy8I GTNNAC 3 cut(s) 477, 997, 1307
HpyAV CCTTC 2 cut(s) 251, 1123
HpyCH4III ACNGT 6 cut(s) 408, 645, 782, 1369, 1593, 1630
HpyCH4IV ACGT 1 cut(s) 1309
HpyCH4V TGCA 9 cut(s) 127, 140, 323, 346, 383, 676, 1237, 1315, 1336
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 178, 246
HpyF3I CTNAG 5 cut(s) 198, 423, 461, 948, 1341
HpySE526I ACGT 1 cut(s) 1309
HspAI GCGC 1 cut(s) 1441
Kpn2I TCCGGA 1 cut(s) 312
Ksp22I TGATCA 2 cut(s) 550, 1261
LmnI GCTCC 2 cut(s) 467, 763
Lsp1109I GCAGC 4 cut(s) 124, 571, 574, 1474
LweI GCATC 6 cut(s) 113, 181, 370, 581, 633, 1144
MaeI CTAG 3 cut(s) 471, 1191, 1562
MaeII ACGT 1 cut(s) 1309
MaeIII GTNAC 3 cut(s) 452, 645, 1093
MboII GAAGA 8 cut(s) 278, 332, 513, 567, 1151, 1330, 1446, 1599
MflI RGATCY 4 cut(s) 142, 1043, 1193, 1252
MhlI GDGCHC 2 cut(s) 568, 810
MlsI TGGCCA 1 cut(s) 560
MluNI TGGCCA 1 cut(s) 560
MlyI GAGTC 1 cut(s) 1094
MmeI TCCRAC 1 cut(s) 484
Mox20I TGGCCA 1 cut(s) 560
MroI TCCGGA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 560
MseI TTAA 3 cut(s) 303, 1347, 1386
MslI CAYNNNNRTG 4 cut(s) 654, 675, 1328, 1416
Msp20I TGGCCA 1 cut(s) 560
MspCI CTTAAG 1 cut(s) 302
MspI CCGG 3 cut(s) 209, 313, 1583
MspR9I CCNGG 6 cut(s) 81, 147, 209, 1074, 1416, 1613
MvaI CCWGG 5 cut(s) 81, 147, 1074, 1416, 1613
MwoI GCNNNNNNNGC 3 cut(s) 110, 178, 246
NciI CCSGG 1 cut(s) 209
NcoI CCATGG 1 cut(s) 1491
NlaIV GGNNCC 3 cut(s) 207, 765, 879
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 2 cut(s) 452, 645
NsbI TGCGCA 1 cut(s) 1442
NspI RCATGY 3 cut(s) 133, 185, 1623
NspV TTCGAA 2 cut(s) 289, 1052
OliI CACNNNNGTG 1 cut(s) 1416
PagI TCATGA 2 cut(s) 162, 192
PceI AGGCCT 1 cut(s) 13
PciI ACATGT 1 cut(s) 1619
PfeI GAWTC 7 cut(s) 189, 412, 821, 839, 899, 1421, 1459
PfoI TCCNGGA 2 cut(s) 79, 145
PkrI GCNGC 4 cut(s) 139, 586, 589, 1489
PleI GAGTC 1 cut(s) 1093
PpsI GAGTC 1 cut(s) 1093
PpuMI RGGWCCY 1 cut(s) 41
PscI ACATGT 1 cut(s) 1619
Psp5II RGGWCCY 1 cut(s) 41
Psp6I CCWGG 5 cut(s) 79, 145, 1072, 1414, 1611
PspGI CCWGG 5 cut(s) 79, 145, 1072, 1414, 1611
PspN4I GGNNCC 3 cut(s) 207, 765, 879
PspPI GGNCC 3 cut(s) 41, 112, 205
PspPPI RGGWCCY 1 cut(s) 41
PstI CTGCAG 1 cut(s) 142
PstNI CAGNNNCTG 2 cut(s) 146, 584
PsuI RGATCY 4 cut(s) 142, 1043, 1193, 1252
RsaI GTAC 1 cut(s) 636
RsaNI GTAC 1 cut(s) 635
RseI CAYNNNNRTG 4 cut(s) 654, 675, 1328, 1416
SaqAI TTAA 3 cut(s) 303, 1347, 1386
SatI GCNGC 4 cut(s) 138, 585, 588, 1488
Sau96I GGNCC 3 cut(s) 41, 112, 205
SchI GAGTC 1 cut(s) 1094
ScrFI CCNGG 6 cut(s) 81, 147, 209, 1074, 1416, 1613
SduI GDGCHC 2 cut(s) 568, 810
SfaNI GCATC 6 cut(s) 113, 181, 370, 581, 633, 1144
SfcI CTRYAG 2 cut(s) 138, 855
SfuI TTCGAA 2 cut(s) 289, 1052
SinI GGWCC 1 cut(s) 41
SmiMI CAYNNNNRTG 4 cut(s) 654, 675, 1328, 1416
SmlI CTYRAG 2 cut(s) 302, 825
SmoI CTYRAG 2 cut(s) 302, 825
SseBI AGGCCT 1 cut(s) 13
SsiI CCGC 4 cut(s) 64, 465, 1030, 1573
SspMI CTAG 3 cut(s) 471, 1191, 1562
StuI AGGCCT 1 cut(s) 13
StyD4I CCNGG 6 cut(s) 79, 145, 207, 1072, 1414, 1611
StyI CCWWGG 2 cut(s) 983, 1491
TaaI ACNGT 6 cut(s) 408, 645, 782, 1369, 1593, 1630
TaiI ACGT 1 cut(s) 1312
TaqI TCGA 5 cut(s) 289, 897, 1052, 1242, 1424
TfiI GAWTC 7 cut(s) 189, 412, 821, 839, 899, 1421, 1459
Tru1I TTAA 3 cut(s) 303, 1347, 1386
Tru9I TTAA 3 cut(s) 303, 1347, 1386
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 2 cut(s) 452, 645
TseI GCWGC 4 cut(s) 137, 584, 587, 1487
Tsp45I GTSAC 2 cut(s) 452, 645
TspRI CASTG 1 cut(s) 568
Vha464I CTTAAG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 41
XapI RAATTY 4 cut(s) 493, 1120, 1269, 1496
XbaI TCTAGA 1 cut(s) 1190
XceI RCATGY 3 cut(s) 133, 185, 1623
XcmI CCANNNNNNNNNTGG 1 cut(s) 1609
XmiI GTMKAC 2 cut(s) 476, 996
XspI CTAG 3 cut(s) 471, 1191, 1562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.