Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005255.1

Orthogroup ID

OG0004067

Physical Location & Seq

Genomic Coordinates Forward (+)

68549 .. 68926

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005255.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgcaaaagccaccagttggctctgaacctcttttgaagaaggcttatgaagaacccgatcctgatgcctctatgtcaaacggcattattcagccagtatctagatctaatgataatttggtgcttccaaatgaaatgcccaatatgcagatcgatgaaccaaatccagatgatcaagaaattcaaataattcaagaccctgtttcagttgcttgtaaacgtatgcagaagaccattgagatgttgcaagctgaagttaatcccacacaagctaccacagtcctcgaaactctgtttaacataataaggaatgttcctaaacacccaggtgaattgaaaaaaagaagactgcgcaaggctaagaatgtcgcaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0009987 GO:0016787 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0032446 GO:0033554 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070011 GO:0070628 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB WLM

Protein Analysis

125

Amino Acids

14.07

Weight (kDa)

5.85

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35690
fragaria_vesca	FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820
malus_domestica	MD09G1117000.v1.1 MD17G1108500.v1.1
prunus_persica	Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1
pyrus_communis	pycom09g04190 pycom09g04200 pycom17g10100
rosa_chinensis	RchiOBHm_Chr2g0157621
rosa_laevigata	RLG00000021001 RLG00000021004
rosa_multiflora	Rmu_co8368661.1_g000001 Rmu_sc0000195.1_g000050 Rmu_sc0005255.1_g000015 Rmu_sc0006475.1_g000002 Rmu_sc0015282.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092080
rosa_rugosa	Rorug02G0462400
rosa_samantha	Rh2AG526500 Rh2BG541400 Rh2CG511200 Rh2DG549900
rosa_wichuraiana	Rw2G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	353
AccB7I	CCANNNNNTGG	1 cut(s)	17
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	273
AfiI	CCNNNNNNNGG	1 cut(s)	17
AgsI	TTSAA	4 cut(s)	37, 185, 194, 337
AjnI	CCWGG	1 cut(s)	325
AleI	CACNNNNGTG	1 cut(s)	327
AluBI	AGCT	2 cut(s)	251, 272
AluI	AGCT	2 cut(s)	251, 272
AlwI	GGATC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	180
AspLEI	GCGC	1 cut(s)	354
AsuHPI	GGTGA	1 cut(s)	341
BbsI	GAAGAC	2 cut(s)	236, 352
BceAI	ACGGC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BciT130I	CCWGG	1 cut(s)	327
BclI	TGATCA	1 cut(s)	172
BfaI	CTAG	2 cut(s)	102, 376
BglII	AGATCT	1 cut(s)	104
Bme1390I	CCNGG	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	2 cut(s)	236, 352
Bsa29I	ATCGAT	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	1 cut(s)	17
Bse1I	ACTGG	2 cut(s)	14, 95
BseBI	CCWGG	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	17
BseNI	ACTGG	2 cut(s)	14, 95
BshVI	ATCGAT	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	17
Bsp143I	GATC	4 cut(s)	58, 104, 150, 172
BspDI	ATCGAT	1 cut(s)	153
BspPI	GGATC	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	14, 95
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	4 cut(s)	58, 104, 150, 172
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	354
BstKTI	GATC	4 cut(s)	61, 107, 153, 175
BstMBI	GATC	4 cut(s)	58, 104, 150, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstV2I	GAAGAC	2 cut(s)	236, 352
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
Bsu15I	ATCGAT	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	249
CfoI	GCGC	1 cut(s)	354
ClaI	ATCGAT	1 cut(s)	153
CviJI	RGCY	7 cut(s)	10, 21, 44, 94, 251, 272, 359
CviKI_1	RGCY	7 cut(s)	10, 21, 44, 94, 251, 272, 359
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	4 cut(s)	60, 106, 152, 174
DpnII	GATC	4 cut(s)	58, 104, 150, 172
Eco57I	CTGAAG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	325
FaiI	YATR	5 cut(s)	48, 74, 146, 224, 302
FbaI	TGATCA	1 cut(s)	172
FspBI	CTAG	2 cut(s)	102, 376
FspI	TGCGCA	1 cut(s)	353
GlaI	GCGC	1 cut(s)	353
HhaI	GCGC	1 cut(s)	354
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	5 cut(s)	62, 102, 167, 176, 194
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	4 cut(s)	4, 148, 226, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	220
HspAI	GCGC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	58, 104, 150, 172
LpnPI	CCDG	7 cut(s)	27, 75, 108, 180, 213, 312, 339
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	2 cut(s)	102, 376
MaeII	ACGT	1 cut(s)	220
MalI	GATC	4 cut(s)	60, 106, 152, 174
MboI	GATC	4 cut(s)	58, 104, 150, 172
MboII	GAAGA	4 cut(s)	49, 62, 241, 357
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	4 cut(s)	115, 180, 189, 332
MnlI	CCTC	3 cut(s)	39, 79, 293
MseI	TTAA	2 cut(s)	258, 297
MslI	CAYNNNNRTG	2 cut(s)	239, 327
MspR9I	CCNGG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	4 cut(s)	58, 104, 150, 172
NsbI	TGCGCA	1 cut(s)	353
OliI	CACNNNNGTG	1 cut(s)	327
PflMI	CCANNNNNTGG	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	104
RseI	CAYNNNNRTG	2 cut(s)	239, 327
SaqAI	TTAA	2 cut(s)	258, 297
Sau3AI	GATC	4 cut(s)	58, 104, 150, 172
ScrFI	CCNGG	1 cut(s)	327
SetI	ASST	5 cut(s)	31, 223, 253, 274, 331
SfaNI	GCATC	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	239, 327
Sse9I	AATT	4 cut(s)	115, 180, 189, 332
SspMI	CTAG	2 cut(s)	102, 376
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	153, 285
TasI	AATT	4 cut(s)	115, 180, 189, 332
Tru1I	TTAA	2 cut(s)	258, 297
Tru9I	TTAA	2 cut(s)	258, 297
TspDTI	ATGAA	3 cut(s)	63, 147, 171
Van91I	CCANNNNNTGG	1 cut(s)	17
XapI	RAATTY	1 cut(s)	180
XbaI	TCTAGA	1 cut(s)	101
XspI	CTAG	2 cut(s)	102, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.