Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004067

Physical Location & Seq

Genomic Coordinates Forward (+)

3081327 .. 3081817

Gene Structure 491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGAAATACAGGAAACTTCGCAAGGCGAACCCCGCAATCCAGAGGAATGTGGCAAACTACAAAGCTGCCATGGAATTCCTTCTCCTGATTGGCTTCAACGAAAGCGTCGTGGATGAAGTTGGAAAGCAAGAGACTTATCTTGTGCTGAAGCGAGATGATCCGGGCTTATTATGGCTTGCCAAGTCCACCCTTGAGACATTTGTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0009987 GO:0016787 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0032446 GO:0033554 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070011 GO:0070628 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB WLM

Protein Analysis

70

Amino Acids

7.93

Weight (kDa)

9.4

Isoelectric Point (pI)

28.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35690
fragaria_vesca	FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820
malus_domestica	MD09G1117000.v1.1 MD17G1108500.v1.1
prunus_persica	Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1
pyrus_communis	pycom09g04190 pycom09g04200 pycom17g10100
rosa_chinensis	RchiOBHm_Chr2g0157621
rosa_laevigata	RLG00000021001 RLG00000021004
rosa_multiflora	Rmu_co8368661.1_g000001 Rmu_sc0000195.1_g000050 Rmu_sc0005255.1_g000015 Rmu_sc0006475.1_g000002 Rmu_sc0015282.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092080
rosa_rugosa	Rorug02G0462400
rosa_samantha	Rh2AG526500 Rh2BG541400 Rh2CG511200 Rh2DG549900
rosa_wichuraiana	Rw2G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	97
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw26I	GTCTC	2 cut(s)	125, 188
AlwI	GGATC	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	125, 188
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	125, 188
Bsp143I	GATC	1 cut(s)	157
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	177
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	2 cut(s)	125, 188
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	177
CseI	GACGC	1 cut(s)	94
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	4 cut(s)	65, 93, 165, 175
CviKI_1	RGCY	4 cut(s)	65, 93, 165, 175
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	1 cut(s)	73
FaiI	YATR	2 cut(s)	71, 172
FatI	CATG	1 cut(s)	69
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	73
HpaII	CCGG	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188III	TCNNGA	2 cut(s)	40, 85
Hpy8I	GTNNAC	1 cut(s)	186
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	3 cut(s)	53, 98, 174
Lsp1109I	GCAGC	1 cut(s)	52
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MluCI	AATT	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	78
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	32
NciI	CCSGG	1 cut(s)	162
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	73
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	67
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	1 cut(s)	67
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	69
TasI	AATT	1 cut(s)	74
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	17, 129
XapI	RAATTY	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.