Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015282.1

Orthogroup ID

OG0004067

Physical Location & Seq

Genomic Coordinates Forward (+)

866 .. 1222

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015282.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgcaaaagccaccagctgctggctctgaacctcttttgaagaaggcttatgaagaacccgatcctgatgcctttgtgtcaagcggcattattcagccagtatctagatctaatgacaatttggtgcttccaaatgaaatgcccagtatgcagatcaatgcaccagatccagatgatcaagaaattcaaataattcaagaccctgtttcagttgcttgtaaacgtacgcagaagaccatttgcaaactgaagttaatcccacacaacatgtttgtttatgcagaacatttatcccatgtattcccttctgtgccaaccaatgtatattgtacccaattcgctgaccttctcatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0009987 GO:0016787 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0032446 GO:0033554 GO:0036211 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044877 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070011 GO:0070628 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUB WLM

Protein Analysis

118

Amino Acids

13.13

Weight (kDa)

4.97

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35690
fragaria_vesca	FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820 FvH4_6g41820
malus_domestica	MD09G1117000.v1.1 MD17G1108500.v1.1
prunus_persica	Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1 Prupe.3G206900_v2.0.a1
pyrus_communis	pycom09g04190 pycom09g04200 pycom17g10100
rosa_chinensis	RchiOBHm_Chr2g0157621
rosa_laevigata	RLG00000021001 RLG00000021004
rosa_multiflora	Rmu_co8368661.1_g000001 Rmu_sc0000195.1_g000050 Rmu_sc0005255.1_g000015 Rmu_sc0006475.1_g000002 Rmu_sc0015282.1_g000001
rosa_roxburghii	Rroxscaffold_2G00092080
rosa_rugosa	Rorug02G0462400
rosa_samantha	Rh2AG526500 Rh2BG541400 Rh2CG511200 Rh2DG549900
rosa_wichuraiana	Rw2G043610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	20
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	2 cut(s)	56, 161
AcsI	RAATTY	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	2 cut(s)	226, 331
AfiI	CCNNNNNNNGG	1 cut(s)	20
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	3 cut(s)	40, 188, 197
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AlwI	GGATC	2 cut(s)	56, 161
AlwNI	CAGNNNCTG	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	4
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BclI	TGATCA	1 cut(s)	175
BfaI	CTAG	1 cut(s)	105
BglII	AGATCT	1 cut(s)	107
BisI	GCNGC	2 cut(s)	18, 85
BlsI	GCNGC	2 cut(s)	19, 86
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse1I	ACTGG	2 cut(s)	98, 144
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseNI	ACTGG	2 cut(s)	98, 144
BseXI	GCAGC	1 cut(s)	4
BsiWI	CGTACG	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	20
Bsp143I	GATC	5 cut(s)	61, 107, 153, 166, 175
BspACI	CCGC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	56, 161
BsrI	ACTGG	2 cut(s)	98, 144
BssMI	GATC	5 cut(s)	61, 107, 153, 166, 175
BstC8I	GCNNGC	1 cut(s)	22
BstKTI	GATC	5 cut(s)	64, 110, 156, 169, 178
BstMBI	GATC	5 cut(s)	61, 107, 153, 166, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	4
BstV2I	GAAGAC	1 cut(s)	239
BstX2I	RGATCY	2 cut(s)	107, 166
BstYI	RGATCY	2 cut(s)	107, 166
Cac8I	GCNNGC	1 cut(s)	22
CaiI	CAGNNNCTG	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	225, 330
CviAII	CATG	3 cut(s)	268, 296, 352
CviJI	RGCY	5 cut(s)	10, 17, 24, 47, 97
CviKI_1	RGCY	5 cut(s)	10, 17, 24, 47, 97
CviQI	GTAC	2 cut(s)	225, 330
DpnI	GATC	5 cut(s)	63, 109, 155, 168, 177
DpnII	GATC	5 cut(s)	61, 107, 153, 166, 175
Eco57I	CTGAAG	1 cut(s)	269
FaeI	CATG	3 cut(s)	271, 299, 355
FaiI	YATR	7 cut(s)	51, 149, 269, 279, 297, 325, 353
FatI	CATG	3 cut(s)	267, 295, 351
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	18, 85
Fsp4HI	GCNGC	2 cut(s)	18, 85
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	2 cut(s)	18, 85
Hin1II	CATG	3 cut(s)	271, 299, 355
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	5 cut(s)	65, 105, 170, 179, 197
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	37, 315, 356
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	5 cut(s)	4, 151, 161, 243, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	3 cut(s)	271, 299, 355
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	5 cut(s)	61, 107, 153, 166, 175
LpnPI	CCDG	8 cut(s)	6, 27, 78, 111, 157, 177, 183, 216
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	223
MalI	GATC	5 cut(s)	63, 109, 155, 168, 177
MboI	GATC	5 cut(s)	61, 107, 153, 166, 175
MboII	GAAGA	3 cut(s)	52, 65, 244
MflI	RGATCY	2 cut(s)	107, 166
MluCI	AATT	4 cut(s)	118, 183, 192, 335
MnlI	CCTC	1 cut(s)	42
MseI	TTAA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	148
NdeII	GATC	5 cut(s)	61, 107, 153, 166, 175
NlaIII	CATG	3 cut(s)	271, 299, 355
NspI	RCATGY	1 cut(s)	271
PciI	ACATGT	1 cut(s)	267
Pfl23II	CGTACG	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	19, 86
PscI	ACATGT	1 cut(s)	267
PspLI	CGTACG	1 cut(s)	224
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	107, 166
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	226, 331
RsaNI	GTAC	2 cut(s)	225, 330
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	2 cut(s)	18, 85
Sau3AI	GATC	5 cut(s)	61, 107, 153, 166, 175
SetI	ASST	4 cut(s)	19, 34, 226, 348
SfaNI	GCATC	1 cut(s)	58
Sse9I	AATT	4 cut(s)	118, 183, 192, 335
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	105
TaiI	ACGT	1 cut(s)	226
TasI	AATT	4 cut(s)	118, 183, 192, 335
TauI	GCSGC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	66, 150
Van91I	CCANNNNNTGG	1 cut(s)	20
XapI	RAATTY	1 cut(s)	183
XbaI	TCTAGA	1 cut(s)	104
XceI	RCATGY	1 cut(s)	271
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.