Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004431

Physical Location & Seq

Genomic Coordinates Forward (+)

26633428 .. 26635988

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1219100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCAATGACTTCTCTCCATCTCAAACCCCCAATTTGCGTGGATATTTGGACTTGTAAACTGTACGATCCCGAAGGTCGAGAATATTTGGACTTGTATTCTGGGATCGCTGTCAATTCGCTTGGACATGGGGATCCTGATTGGATACGGGTTGTCACAGAGCAAGCCCATACTCTTACGCACGTCAGCAATGCCTTCTATTCCATCCTTCAGGTGGAGCTAGCAAAGCCTCTGGTGGCTTGCTTATTTGCTGATCGTGTCTTTTTCTCCAACTCAGGAACAGAAGCAAATGAAGCTGCCATAAAATTTGCAAGAAAGTTTCAAAGATATTCTTTCCCTGATAAGAAAGAGCCTGCAACAGAATTCATTTCCTTCACCAACAGCTTCCACGGAAGGACAATGGGAGCTGTTGCTTTGACGAGTAAGGAGCATTACCGGTCACCATTTGAGCCTGTCATGCCTGGAGTTACTTTCTTGGAGTATGGAAATATTGATGCTGCGGGAAAACTAATTCAATCTGGAAAAATTGCTGCCGTCTTTGTCGAACCTATCCAGGGTGAAGGCGGCGTCCATAGCGCAACTAAAGAATTTTTGCAGTCGTTGCGTGGTGCATGTGATGATTCGGGGTCACTACTGGTCTTTGATGAGGTACAATGTGGCTTGGGGAGGACAGGTTATCTCTGGGCGCACGAAGCTTATGGTGTAGTCCCCGATATAATGACGCTGGCCAAACCTCTTGCAGGAGGGCTTCCCATTGGAGCTGCATTAGTCACCGAAAAGTATTTCAAAGAACTGTTAACAAGGAAGCTGGGAGCAAATCCACATGTGAAAGAAGTACGTGGTTTTGGGCTCATTGTTGGGGTGGAGCTGGATATATCTGCTTCGACGCTTGTGGATGCCTGTCGAAATTCTGGCCTGCTCATAATTACAGCGGGAAAAGGAAATGTTCTCAGGCTTGTGCCCCCATTGATTATCTCTAAGCCAGAATTGGAGCATGCGGCTGATGTTTTGCTTGTATGTTTGCCAGTCCTTGATGCCTCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003992 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0019752 GO:0019842 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0036094 GO:0042742 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048731 GO:0048856 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0070279 GO:0071704 GO:0080022 GO:0097159 GO:0098542 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

349

Amino Acids

37.71

Weight (kDa)

5.71

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_3	PF00202	19 - 265	1.5e-77	Aminotransferase class-III
Aminotran_3	PF00202	258 - 337	4.3e-12	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80600
fragaria_vesca	FvH4_3g15500 FvH4_3g15500 FvH4_6g29020
malus_domestica	MD05G1222800.v1.1 MD05G1223000.v1.1 MD10G1204400.v1.1 MD17G1219100.v1.1
prunus_persica	Prupe.3G094600_v2.0.a1 Prupe.4G137500_v2.0.a1
pyrus_communis	pycom05g20540
rosa_chinensis	RchiOBHm_Chr2g0133691 RchiOBHm_Chr5g0026121
rosa_laevigata	RLG00000019356 RLG00000032903
rosa_multiflora	Rmu_sc0000924.1_g000010 Rmu_sc0002806.1_g000006 Rmu_sc0002909.1_g000021 Rmu_sc0007285.1_g000005
rosa_roxburghii	Rroxscaffold_1G00053190 Rroxscaffold_2G00110900
rosa_rugosa	Rorug02G0313000 Rorug05G0090700
rosa_samantha	Rh2AG366400 Rh2BG372000 Rh2CG349500 Rh2DG388900 Rh5CG199400 Rh5DG182000
rosa_wichuraiana	Rw0G015720 Rw2G029810 Rw5G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	500, 564, 932, 998
AclWI	GGATC	4 cut(s)	62, 113, 128, 141
AcoI	YGGCCR	1 cut(s)	726
AcsI	RAATTY	4 cut(s)	305, 362, 587, 907
AcuI	CTGAAG	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	567
AfaI	GTAC	3 cut(s)	65, 651, 837
AfiI	CCNNNNNNNGG	3 cut(s)	214, 554, 740
AflIII	ACRYGT	1 cut(s)	823
AgeI	ACCGGT	1 cut(s)	435
AgsI	TTSAA	3 cut(s)	323, 515, 787
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	2 cut(s)	460, 552
AluBI	AGCT	8 cut(s)	220, 296, 384, 407, 695, 761, 808, 868
AluI	AGCT	8 cut(s)	220, 296, 384, 407, 695, 761, 808, 868
AlwI	GGATC	4 cut(s)	62, 113, 128, 141
AoxI	GGCC	2 cut(s)	726, 913
ApeKI	GCWGC	4 cut(s)	296, 497, 530, 761
ApoI	RAATTY	4 cut(s)	305, 362, 587, 907
AsiGI	ACCGGT	1 cut(s)	435
AspLEI	GCGC	2 cut(s)	578, 688
AsuHPI	GGTGA	4 cut(s)	367, 432, 569, 763
AsuNHI	GCTAGC	1 cut(s)	220
BaeGI	GKGCMC	1 cut(s)	963
BalI	TGGCCA	1 cut(s)	728
BamHI	GGATCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	852
BbvI	GCAGC	4 cut(s)	283, 484, 517, 748
BccI	CCATC	2 cut(s)	27, 212
BceAI	ACGGC	1 cut(s)	518
BciT130I	CCWGG	2 cut(s)	462, 554
BciVI	GTATCC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	138
BisI	GCNGC	6 cut(s)	297, 498, 531, 565, 762, 999
BlsI	GCNGC	6 cut(s)	298, 499, 532, 566, 763, 1000
Bme1390I	CCNGG	2 cut(s)	462, 554
BmgBI	CACGTC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	2 cut(s)	462, 554
BmsI	GCATC	3 cut(s)	484, 886, 1024
BmtI	GCTAGC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	839
BsaHI	GRCGYC	1 cut(s)	567
BsaJI	CCNNGG	2 cut(s)	388, 553
BsaWI	WCCGGW	1 cut(s)	435
BsaXI	ACNNNNNCTCC	2 cut(s)	658, 688
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 554, 740
Bse118I	RCCGGY	1 cut(s)	435
Bse1I	ACTGG	2 cut(s)	639, 1025
Bse3DI	GCAATG	2 cut(s)	12, 196
BseBI	CCWGG	2 cut(s)	462, 554
BseDI	CCNNGG	2 cut(s)	388, 553
BseGI	GGATG	2 cut(s)	204, 901
BseLI	CCNNNNNNNGG	3 cut(s)	214, 554, 740
BseMI	GCAATG	2 cut(s)	12, 196
BseMII	CTCAG	2 cut(s)	288, 964
BseNI	ACTGG	2 cut(s)	639, 1025
BseSI	GKGCMC	1 cut(s)	963
BseXI	GCAGC	4 cut(s)	283, 484, 517, 748
BseYI	CCCAGC	1 cut(s)	808
BshFI	GGCC	2 cut(s)	728, 915
BshTI	ACCGGT	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	436
BslFI	GGGAC	1 cut(s)	692
BslI	CCNNNNNNNGG	3 cut(s)	214, 554, 740
BsmFI	GGGAC	1 cut(s)	692
BsnI	GGCC	2 cut(s)	728, 915
Bsp1286I	GDGCHC	2 cut(s)	852, 963
Bsp143I	GATC	4 cut(s)	67, 105, 133, 253
BspACI	CCGC	4 cut(s)	500, 564, 932, 998
BspANI	GGCC	2 cut(s)	728, 915
BspCNI	CTCAG	2 cut(s)	287, 963
BspLI	GGNNCC	1 cut(s)	135
BspOI	GCTAGC	1 cut(s)	224
BspPI	GGATC	4 cut(s)	62, 113, 128, 141
BsrDI	GCAATG	2 cut(s)	12, 196
BsrFI	RCCGGY	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	639, 1025
BssAI	RCCGGY	1 cut(s)	435
BssECI	CCNNGG	2 cut(s)	388, 553
BssMI	GATC	4 cut(s)	67, 105, 133, 253
BssNI	GRCGYC	1 cut(s)	567
Bst2UI	CCWGG	2 cut(s)	462, 554
Bst4CI	ACNGT	2 cut(s)	63, 795
BstACI	GRCGYC	1 cut(s)	567
BstAPI	GCANNNNNTGC	1 cut(s)	601
BstBAI	YACGTR	1 cut(s)	839
BstC8I	GCNNGC	7 cut(s)	165, 222, 241, 354, 726, 917, 996
BstDEI	CTNAG	4 cut(s)	274, 950, 978, 1039
BstDSI	CCRYGG	1 cut(s)	388
BstEII	GGTNACC	1 cut(s)	438
BstENI	CCTNNNNNAGG	1 cut(s)	738
BstF5I	GGATG	2 cut(s)	204, 901
BstHHI	GCGC	2 cut(s)	578, 688
BstKTI	GATC	4 cut(s)	70, 108, 136, 256
BstMBI	GATC	4 cut(s)	67, 105, 133, 253
BstMWI	GCNNNNNNNGC	6 cut(s)	226, 293, 457, 573, 601, 692
BstNI	CCWGG	2 cut(s)	462, 554
BstNSI	RCATGY	3 cut(s)	615, 827, 998
BstPI	GGTNACC	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	460, 552
BstSLI	GKGCMC	1 cut(s)	963
BstV1I	GCAGC	4 cut(s)	283, 484, 517, 748
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuI	GTATCC	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	728, 915
BtgI	CCRYGG	1 cut(s)	388
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	2 cut(s)	204, 901
Cac8I	GCNNGC	7 cut(s)	165, 222, 241, 354, 726, 917, 996
CfoI	GCGC	2 cut(s)	578, 688
Cfr10I	RCCGGY	1 cut(s)	435
CseI	GACGC	3 cut(s)	556, 730, 895
Csp6I	GTAC	3 cut(s)	64, 650, 836
CspAI	ACCGGT	1 cut(s)	435
CspCI	CAANNNNNGTGG	2 cut(s)	21, 56
CviAII	CATG	5 cut(s)	128, 457, 612, 824, 995
CviQI	GTAC	3 cut(s)	64, 650, 836
DdeI	CTNAG	4 cut(s)	274, 950, 978, 1039
DpnI	GATC	4 cut(s)	69, 107, 135, 255
DpnII	GATC	4 cut(s)	67, 105, 133, 253
EaeI	YGGCCR	1 cut(s)	726
Eco24I	GRGCYC	1 cut(s)	852
Eco57I	CTGAAG	1 cut(s)	194
Eco91I	GGTNACC	1 cut(s)	438
EcoNI	CCTNNNNNAGG	1 cut(s)	738
EcoO65I	GGTNACC	1 cut(s)	438
EcoRI	GAATTC	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	460, 552
EcoT38I	GRGCYC	1 cut(s)	852
FaeI	CATG	5 cut(s)	131, 460, 615, 827, 998
FalI	AAGNNNNNCTT	2 cut(s)	316, 348
FaqI	GGGAC	1 cut(s)	692
FatI	CATG	5 cut(s)	127, 456, 611, 823, 994
FauI	CCCGC	2 cut(s)	493, 925
Fnu4HI	GCNGC	6 cut(s)	297, 498, 531, 565, 762, 999
FokI	GGATG	2 cut(s)	191, 908
FriOI	GRGCYC	1 cut(s)	852
Fsp4HI	GCNGC	6 cut(s)	297, 498, 531, 565, 762, 999
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	2 cut(s)	577, 687
GluI	GCNGC	6 cut(s)	297, 498, 531, 565, 762, 999
GsaI	CCCAGC	1 cut(s)	812
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	2 cut(s)	728, 915
HapII	CCGG	1 cut(s)	436
HgaI	GACGC	3 cut(s)	556, 730, 895
HhaI	GCGC	2 cut(s)	578, 688
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	5 cut(s)	131, 460, 615, 827, 998
Hin6I	GCGC	2 cut(s)	576, 686
HinP1I	GCGC	2 cut(s)	576, 686
HincII	GTYRAC	1 cut(s)	798
HindII	GTYRAC	1 cut(s)	798
HindIII	AAGCTT	1 cut(s)	693
HinfI	GANTC	1 cut(s)	620
HpaI	GTTAAC	1 cut(s)	798
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	4 cut(s)	367, 432, 569, 763
Hpy166II	GTNNAC	2 cut(s)	59, 798
Hpy188I	TCNGA	1 cut(s)	1042
Hpy188III	TCNNGA	5 cut(s)	71, 80, 137, 276, 519
Hpy8I	GTNNAC	2 cut(s)	59, 798
Hpy99I	CGWCG	1 cut(s)	889
HpyAV	CCTTC	6 cut(s)	68, 205, 218, 382, 387, 554
HpyCH4III	ACNGT	2 cut(s)	63, 795
HpyCH4IV	ACGT	2 cut(s)	183, 838
HpyCH4V	TGCA	6 cut(s)	311, 356, 595, 611, 740, 764
HpyF10VI	GCNNNNNNNGC	6 cut(s)	226, 293, 457, 573, 601, 692
HpyF3I	CTNAG	4 cut(s)	274, 950, 978, 1039
HpySE526I	ACGT	2 cut(s)	183, 838
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	5 cut(s)	131, 460, 615, 827, 998
HspAI	GCGC	2 cut(s)	576, 686
KspAI	GTTAAC	1 cut(s)	798
Kzo9I	GATC	4 cut(s)	67, 105, 133, 253
LmnI	GCTCC	7 cut(s)	217, 404, 427, 758, 812, 865, 991
Lsp1109I	GCAGC	4 cut(s)	283, 484, 517, 748
LweI	GCATC	3 cut(s)	484, 886, 1024
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	2 cut(s)	183, 838
MaeIII	GTNAC	5 cut(s)	154, 438, 466, 627, 769
MalI	GATC	4 cut(s)	69, 107, 135, 255
MboI	GATC	4 cut(s)	67, 105, 133, 253
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	852, 963
MlsI	TGGCCA	1 cut(s)	728
MluNI	TGGCCA	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	5 cut(s)	240, 640, 660, 737, 744
Mox20I	TGGCCA	1 cut(s)	728
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	1 cut(s)	797
Msp20I	TGGCCA	1 cut(s)	728
MspA1I	CMGCKG	1 cut(s)	932
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	2 cut(s)	462, 554
MvaI	CCWGG	2 cut(s)	462, 554
MwoI	GCNNNNNNNGC	6 cut(s)	226, 293, 457, 573, 601, 692
NdeII	GATC	4 cut(s)	67, 105, 133, 253
NheI	GCTAGC	1 cut(s)	220
NlaIII	CATG	5 cut(s)	131, 460, 615, 827, 998
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	4 cut(s)	154, 438, 627, 769
NspI	RCATGY	3 cut(s)	615, 827, 998
PaeI	GCATGC	1 cut(s)	998
PciI	ACATGT	1 cut(s)	823
PfeI	GAWTC	1 cut(s)	620
PinAI	ACCGGT	1 cut(s)	435
PkrI	GCNGC	6 cut(s)	298, 499, 532, 566, 763, 1000
Ppu21I	YACGTR	1 cut(s)	839
PscI	ACATGT	1 cut(s)	823
Psp6I	CCWGG	2 cut(s)	460, 552
PspEI	GGTNACC	1 cut(s)	438
PspFI	CCCAGC	1 cut(s)	808
PspGI	CCWGG	2 cut(s)	460, 552
PspN4I	GGNNCC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	3 cut(s)	65, 651, 837
RsaNI	GTAC	3 cut(s)	64, 650, 836
SaqAI	TTAA	1 cut(s)	797
SatI	GCNGC	6 cut(s)	297, 498, 531, 565, 762, 999
Sau3AI	GATC	4 cut(s)	67, 105, 133, 253
ScrFI	CCNGG	2 cut(s)	462, 554
SduI	GDGCHC	2 cut(s)	852, 963
SfaNI	GCATC	3 cut(s)	484, 886, 1024
SphI	GCATGC	1 cut(s)	998
SsiI	CCGC	4 cut(s)	500, 564, 932, 998
SspI	AATATT	2 cut(s)	86, 490
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	460, 552
TaaI	ACNGT	2 cut(s)	63, 795
TaiI	ACGT	2 cut(s)	186, 841
TaqI	TCGA	4 cut(s)	79, 543, 884, 904
TauI	GCSGC	2 cut(s)	567, 1001
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	1 cut(s)	797
Tru9I	TTAA	1 cut(s)	797
TseFI	GTSAC	4 cut(s)	154, 438, 627, 769
TseI	GCWGC	4 cut(s)	296, 497, 530, 761
Tsp45I	GTSAC	4 cut(s)	154, 438, 627, 769
TspDTI	ATGAA	2 cut(s)	306, 355
TspGWI	ACGGA	1 cut(s)	405
XagI	CCTNNNNNAGG	1 cut(s)	738
XapI	RAATTY	4 cut(s)	305, 362, 587, 907
XceI	RCATGY	3 cut(s)	615, 827, 998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.