Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0004431

Physical Location & Seq

Genomic Coordinates Reverse (-)

54342620 .. 54346261

Gene Structure 3642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG366400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCATCATAGCTTCTATATGCTTTTTTTTTTTTTTTGTCCAAAAACTGGCTCAGGAAAATGGAGGTTGTTGTTGCAGGTGGAGCTGGCAAAACGGCTGGTGGCTTGCTCCTTTGCTGACCGTGTCTTTTTCTCAAACTCCGGAACTGAAGCAAATGAAGCTGCCATAAAATTTGCAAGAAAGTTCCAAAGATTTTCAAACCCTGTGAAGAAAGAGCCTACAACAGAATTCATTTCTTTCACTAACAGCTTCCATGGGAGGACGATGGGGTCCGTGGCTTTGACTAGTAAAGAGCATTACCGATCACCATTTGAGCCTCTCATGCCTGGAGTCACTTTCTTAGATTATGGAAATGTACAAGCTGCAAGAAAGCTAATTAAATCTGGCAAAATCGCTGCTGTGTTTGTTGAACCTATCCAGGGTGAAGGTGGGATAAATAGTGCAACTAAAGAATTTTTGCAATCCTTGCGTGGTGCTTGTGATGATTCAGGTTCTCTTCTGGTCTTTGATGAGGTTCAATGTGGGTTGGGTCGAACTGGTTATCTCTTGGCGCATGAAGCTTATGGTGTATTCCCAGATATAATGACTCTGGCCAAGCCTCTTGCAGGAGGACTTCCCATAGGAGCTGTATTAGTGACTGAAAAGGTTGCTGCTTCAATGAAGTATGGAGAGCATGGAAGCACTTTTGCTGGGGGGCCCCTTATCTGCAATGCTGCCCTTGCGGTCTTGGACAAAATTTCCAAGCCTGAGTTTCTCAAAAGCGTCTCAGAGAAAGGTCAGTACTTCAAAGAAGTGCTGACAAAGAAGCTGGGTACAAATCCACATGTGAGAGAAGTACGGGGTTTGGGTCTCATTGTTGGAGTAGAGCTGGACGTGTCTGCTTCACCGCTTGTCGATGCCTGTAGGAATTCTGGTCTTCTGATAATAACAGCCGGAAAAGGAAATGTCCTCAGGCTTGTGCCGCCGTTGATTATCTCTAAGCCAGAATTGGAGCATGCAGCTGAGATTTTGCTTGAATGTTTGCCTGCCCTTGATGGCTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003992 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0019752 GO:0019842 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0036094 GO:0042742 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048731 GO:0048856 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0070279 GO:0071704 GO:0080022 GO:0097159 GO:0098542 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

348

Amino Acids

37.6

Weight (kDa)

8.73

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_3	PF00202	26 - 341	1.5e-94	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80600
fragaria_vesca	FvH4_3g15500 FvH4_3g15500 FvH4_6g29020
malus_domestica	MD05G1222800.v1.1 MD05G1223000.v1.1 MD10G1204400.v1.1 MD17G1219100.v1.1
prunus_persica	Prupe.3G094600_v2.0.a1 Prupe.4G137500_v2.0.a1
pyrus_communis	pycom05g20540
rosa_chinensis	RchiOBHm_Chr2g0133691 RchiOBHm_Chr5g0026121
rosa_laevigata	RLG00000019356 RLG00000032903
rosa_multiflora	Rmu_sc0000924.1_g000010 Rmu_sc0002806.1_g000006 Rmu_sc0002909.1_g000021 Rmu_sc0007285.1_g000005
rosa_roxburghii	Rroxscaffold_1G00053190 Rroxscaffold_2G00110900
rosa_rugosa	Rorug02G0313000 Rorug05G0090700
rosa_samantha	Rh2AG366400 Rh2BG372000 Rh2CG349500 Rh2DG388900 Rh5CG199400 Rh5DG182000
rosa_wichuraiana	Rw0G015720 Rw2G029810 Rw5G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	67
AasI	GACNNNNNNGTC	1 cut(s)	268
Acc36I	ACCTGC	1 cut(s)	67
AccB7I	CCANNNNNTGG	1 cut(s)	47
AccIII	TCCGGA	1 cut(s)	140
AciI	CCGC	3 cut(s)	722, 887, 962
AcoI	YGGCCR	1 cut(s)	591
AcsI	RAATTY	5 cut(s)	170, 227, 452, 735, 907
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	4 cut(s)	357, 782, 814, 837
AfiI	CCNNNNNNNGG	3 cut(s)	47, 419, 605
AflIII	ACRYGT	2 cut(s)	823, 873
AgsI	TTSAA	6 cut(s)	198, 410, 518, 657, 787, 1016
AhlI	ACTAGT	1 cut(s)	284
AjiI	CACGTC	1 cut(s)	874
AjnI	CCWGG	2 cut(s)	325, 417
Alw26I	GTCTC	2 cut(s)	769, 854
Aor13HI	TCCGGA	1 cut(s)	140
AoxI	GGCC	2 cut(s)	591, 695
ApaI	GGGCCC	1 cut(s)	699
ApeKI	GCWGC	6 cut(s)	161, 362, 395, 650, 713, 998
ApoI	RAATTY	5 cut(s)	170, 227, 452, 735, 907
AspLEI	GCGC	1 cut(s)	553
AspS9I	GGNCC	3 cut(s)	270, 695, 696
AsuHPI	GGTGA	3 cut(s)	297, 434, 876
AvaII	GGWCC	1 cut(s)	270
AxyI	CCTNAGG	1 cut(s)	950
BaeGI	GKGCMC	1 cut(s)	699
BalI	TGGCCA	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	699
BbsI	GAAGAC	1 cut(s)	908
BbvI	GCAGC	6 cut(s)	148, 349, 382, 637, 700, 1010
BccI	CCATC	2 cut(s)	259, 1028
BceAI	ACGGC	2 cut(s)	110, 949
BciT130I	CCWGG	2 cut(s)	327, 419
BcoDI	GTCTC	2 cut(s)	769, 854
BcuI	ACTAGT	1 cut(s)	284
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	901
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	7 cut(s)	162, 363, 396, 651, 714, 962, 999
BlsI	GCNGC	7 cut(s)	163, 364, 397, 652, 715, 963, 1000
BmcAI	AGTACT	1 cut(s)	782
Bme1390I	CCNGG	2 cut(s)	327, 419
Bme18I	GGWCC	1 cut(s)	270
BmgBI	CACGTC	1 cut(s)	874
BmgT120I	GGNCC	3 cut(s)	270, 695, 696
BmiI	GGNNCC	4 cut(s)	271, 696, 697, 698
BmrFI	CCNGG	2 cut(s)	327, 419
BmsI	GCATC	2 cut(s)	13, 886
BpiI	GAAGAC	1 cut(s)	908
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	854
BsaJI	CCNNGG	3 cut(s)	253, 273, 418
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 419, 605
Bse1I	ACTGG	2 cut(s)	52, 541
Bse21I	CCTNAGG	1 cut(s)	950
Bse3DI	GCAATG	1 cut(s)	715
BseAI	TCCGGA	1 cut(s)	140
BseBI	CCWGG	2 cut(s)	327, 419
BseDI	CCNNGG	3 cut(s)	253, 273, 418
BseLI	CCNNNNNNNGG	3 cut(s)	47, 419, 605
BseMI	GCAATG	1 cut(s)	715
BseMII	CTCAG	5 cut(s)	66, 738, 780, 964, 993
BseNI	ACTGG	2 cut(s)	52, 541
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	6 cut(s)	148, 349, 382, 637, 700, 1010
BseYI	CCCAGC	2 cut(s)	689, 808
BshFI	GGCC	2 cut(s)	593, 697
BsiSI	CCGG	2 cut(s)	141, 933
BslI	CCNNNNNNNGG	3 cut(s)	47, 419, 605
BsmAI	GTCTC	2 cut(s)	769, 854
BsmBI	CGTCTC	1 cut(s)	769
BsnI	GGCC	2 cut(s)	593, 697
Bso31I	GGTCTC	1 cut(s)	854
Bsp120I	GGGCCC	1 cut(s)	695
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp13I	TCCGGA	1 cut(s)	140
Bsp1407I	TGTACA	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	302
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	3 cut(s)	722, 887, 962
BspANI	GGCC	2 cut(s)	593, 697
BspCNI	CTCAG	5 cut(s)	65, 739, 779, 963, 994
BspEI	TCCGGA	1 cut(s)	140
BspLI	GGNNCC	4 cut(s)	271, 696, 697, 698
BspMI	ACCTGC	1 cut(s)	67
BspTNI	GGTCTC	1 cut(s)	854
BsrDI	GCAATG	1 cut(s)	715
BsrGI	TGTACA	1 cut(s)	355
BsrI	ACTGG	2 cut(s)	52, 541
BssECI	CCNNGG	3 cut(s)	253, 273, 418
BssMI	GATC	1 cut(s)	302
BssT1I	CCWWGG	1 cut(s)	253
Bst2UI	CCWGG	2 cut(s)	327, 419
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	501
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstAUI	TGTACA	1 cut(s)	355
BstC8I	GCNNGC	4 cut(s)	87, 106, 996, 1026
BstDEI	CTNAG	7 cut(s)	52, 340, 747, 766, 950, 978, 1002
BstDSI	CCRYGG	2 cut(s)	253, 273
BstENI	CCTNNNNNAGG	1 cut(s)	603
BstHHI	GCGC	1 cut(s)	553
BstKTI	GATC	1 cut(s)	305
BstMAI	GTCTC	2 cut(s)	769, 854
BstMBI	GATC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 158, 322, 466, 557, 719, 961
BstNI	CCWGG	2 cut(s)	327, 419
BstNSI	RCATGY	2 cut(s)	827, 998
BstSCI	CCNGG	2 cut(s)	325, 417
BstSFI	CTRYAG	1 cut(s)	901
BstSLI	GKGCMC	1 cut(s)	699
BstV1I	GCAGC	6 cut(s)	148, 349, 382, 637, 700, 1010
BstV2I	GAAGAC	1 cut(s)	908
Bsu36I	CCTNAGG	1 cut(s)	950
BsuRI	GGCC	2 cut(s)	593, 697
BtgI	CCRYGG	2 cut(s)	253, 273
BtrI	CACGTC	1 cut(s)	874
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	4 cut(s)	87, 106, 996, 1026
CfoI	GCGC	1 cut(s)	553
Cfr13I	GGNCC	3 cut(s)	270, 695, 696
CseI	GACGC	1 cut(s)	751
Csp6I	GTAC	4 cut(s)	356, 781, 813, 836
CviAII	CATG	6 cut(s)	254, 322, 554, 674, 824, 995
CviQI	GTAC	4 cut(s)	356, 781, 813, 836
DdeI	CTNAG	7 cut(s)	52, 340, 747, 766, 950, 978, 1002
DpnI	GATC	1 cut(s)	304
DpnII	GATC	1 cut(s)	302
DrdI	GACNNNNNNGTC	1 cut(s)	268
DseDI	GACNNNNNNGTC	1 cut(s)	268
EaeI	YGGCCR	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	699
Eco31I	GGTCTC	1 cut(s)	854
Eco47I	GGWCC	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	950
EcoNI	CCTNNNNNAGG	1 cut(s)	603
EcoO109I	RGGNCCY	2 cut(s)	695, 696
EcoRI	GAATTC	2 cut(s)	227, 907
EcoRII	CCWGG	2 cut(s)	325, 417
EcoT14I	CCWWGG	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	699
ErhI	CCWWGG	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	769
FaeI	CATG	6 cut(s)	257, 325, 557, 677, 827, 998
FatI	CATG	6 cut(s)	253, 321, 553, 673, 823, 994
Fnu4HI	GCNGC	7 cut(s)	162, 363, 396, 651, 714, 962, 999
FriOI	GRGCYC	1 cut(s)	699
Fsp4HI	GCNGC	7 cut(s)	162, 363, 396, 651, 714, 962, 999
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	552
GluI	GCNGC	7 cut(s)	162, 363, 396, 651, 714, 962, 999
GsaI	CCCAGC	2 cut(s)	693, 812
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	593, 697
HapII	CCGG	2 cut(s)	141, 933
HgaI	GACGC	1 cut(s)	751
HhaI	GCGC	1 cut(s)	553
Hin1II	CATG	6 cut(s)	257, 325, 557, 677, 827, 998
Hin6I	GCGC	1 cut(s)	551
HinP1I	GCGC	1 cut(s)	551
HindIII	AAGCTT	1 cut(s)	558
HinfI	GANTC	3 cut(s)	330, 485, 586
HpaII	CCGG	2 cut(s)	141, 933
HphI	GGTGA	3 cut(s)	297, 434, 876
Hpy188I	TCNGA	2 cut(s)	769, 921
Hpy188III	TCNNGA	2 cut(s)	54, 141
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	873
HpyCH4V	TGCA	9 cut(s)	4, 76, 176, 365, 443, 460, 605, 708, 998
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 158, 322, 466, 557, 719, 961
HpyF3I	CTNAG	7 cut(s)	52, 340, 747, 766, 950, 978, 1002
HpySE526I	ACGT	1 cut(s)	873
Hsp92II	CATG	6 cut(s)	257, 325, 557, 677, 827, 998
HspAI	GCGC	1 cut(s)	551
Kpn2I	TCCGGA	1 cut(s)	140
Kzo9I	GATC	1 cut(s)	302
LmnI	GCTCC	4 cut(s)	82, 113, 623, 991
Lsp1109I	GCAGC	6 cut(s)	148, 349, 382, 637, 700, 1010
LweI	GCATC	2 cut(s)	13, 886
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	873
MaeIII	GTNAC	2 cut(s)	331, 634
MalI	GATC	1 cut(s)	304
MboI	GATC	1 cut(s)	302
MboII	GAAGA	3 cut(s)	220, 488, 908
MhlI	GDGCHC	1 cut(s)	699
MlsI	TGGCCA	1 cut(s)	593
MluCI	AATT	7 cut(s)	170, 227, 375, 452, 735, 907, 986
MluNI	TGGCCA	1 cut(s)	593
MlyI	GAGTC	2 cut(s)	339, 580
MmeI	TCCRAC	1 cut(s)	838
MnlI	CCTC	7 cut(s)	57, 252, 327, 505, 602, 609, 959
Mox20I	TGGCCA	1 cut(s)	593
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	593
MseI	TTAA	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	593
MspA1I	CMGCKG	1 cut(s)	1001
MspI	CCGG	2 cut(s)	141, 933
MspR9I	CCNGG	2 cut(s)	327, 419
MvaI	CCWGG	2 cut(s)	327, 419
MwoI	GCNNNNNNNGC	7 cut(s)	82, 158, 322, 466, 557, 719, 961
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	1 cut(s)	302
NlaIII	CATG	6 cut(s)	257, 325, 557, 677, 827, 998
NlaIV	GGNNCC	4 cut(s)	271, 696, 697, 698
NmuCI	GTSAC	2 cut(s)	331, 634
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	827, 998
PaeI	GCATGC	1 cut(s)	998
PaqCI	CACCTGC	1 cut(s)	67
PciI	ACATGT	1 cut(s)	823
PfeI	GAWTC	1 cut(s)	485
PflFI	GACNNNGTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	7 cut(s)	163, 364, 397, 652, 715, 963, 1000
PleI	GAGTC	2 cut(s)	338, 580
PpsI	GAGTC	2 cut(s)	338, 580
PscI	ACATGT	1 cut(s)	823
Psp6I	CCWGG	2 cut(s)	325, 417
PspFI	CCCAGC	2 cut(s)	689, 808
PspGI	CCWGG	2 cut(s)	325, 417
PspN4I	GGNNCC	4 cut(s)	271, 696, 697, 698
PspOMI	GGGCCC	1 cut(s)	695
PspPI	GGNCC	3 cut(s)	270, 695, 696
PsyI	GACNNNGTC	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	1001
RsaI	GTAC	4 cut(s)	357, 782, 814, 837
RsaNI	GTAC	4 cut(s)	356, 781, 813, 836
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	7 cut(s)	162, 363, 396, 651, 714, 962, 999
Sau3AI	GATC	1 cut(s)	302
Sau96I	GGNCC	3 cut(s)	270, 695, 696
ScaI	AGTACT	1 cut(s)	782
SchI	GAGTC	2 cut(s)	339, 580
ScrFI	CCNGG	2 cut(s)	327, 419
SduI	GDGCHC	1 cut(s)	699
SfaNI	GCATC	2 cut(s)	13, 886
SfcI	CTRYAG	1 cut(s)	901
SinI	GGWCC	1 cut(s)	270
SpeI	ACTAGT	1 cut(s)	284
SphI	GCATGC	1 cut(s)	998
Sse9I	AATT	7 cut(s)	170, 227, 375, 452, 735, 907, 986
SsiI	CCGC	3 cut(s)	722, 887, 962
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	2 cut(s)	325, 417
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	1 cut(s)	876
TaqI	TCGA	2 cut(s)	532, 894
TasI	AATT	7 cut(s)	170, 227, 375, 452, 735, 907, 986
TatI	WGTACW	2 cut(s)	355, 780
TauI	GCSGC	1 cut(s)	964
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseFI	GTSAC	2 cut(s)	331, 634
TseI	GCWGC	6 cut(s)	161, 362, 395, 650, 713, 998
Tsp45I	GTSAC	2 cut(s)	331, 634
TspDTI	ATGAA	4 cut(s)	171, 220, 570, 674
TspGWI	ACGGA	1 cut(s)	262
Tth111I	GACNNNGTC	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	270
XagI	CCTNNNNNAGG	1 cut(s)	603
XapI	RAATTY	5 cut(s)	170, 227, 452, 735, 907
XceI	RCATGY	2 cut(s)	827, 998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XspI	CTAG	1 cut(s)	285
ZrmI	AGTACT	1 cut(s)	782
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.