Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004431

Physical Location & Seq

Genomic Coordinates Forward (+)

35399191 .. 35402046

Gene Structure 2856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00110900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGACTTCTCTCCAGCTCCTAAACCCCCTAGTTTTCGCGGGAAAACGAAGCCCCCGCGTATGGACCACTGCGGTGACGCCACGTGGGTGTCTTAACGTGGACGTGCCCGCACGAGATCAAAAGGTGCCGGCGGCGGCGGCGGTGGGGAGCCAGGAGGTGATGGAGGCGGAGAAGAGGGTTATGGTGGGGACGTACAATAGACCACCGGTGGTGATCGCTAGTGGCAAAGGATGTAAATTGTACGATCCTGAAGGGCGAGAGTATTTGGACTTGATGTCTGGGATTGCTGTCAATGCGCTTGGACATGGGGATCCGGATTGGATACGGGCCGTTACAGAGCAAGCCCATGTGCTCACCCATGTCAGCAATGTCTACTATTCCATTCCCCAGGTGGAGCTGGCAAAACGGCTGGTGGCTTGCTCCTTTGCTGACCGTGTCTTTTTCTCAAACTCCGGAACTGAAGCAAATGAAGCTGCCATAAAATTTGCAAGAAAGTTCCAAAGATTTTCAAACCCTGAGAAGAAAGAGCCTGCAACAGAATTCATTTCTTTCACTAACAGCTTCCATGGGAGGACGATGGGGTCTGTGGCTTTGACTAGTAAAGAGCATTACCGATCACCATTTGAGCCTCTCATGCCTGGAGTCACTTTCTTAGATTATGGAAATGTACAAGCTGCAAGAAAGCTAATTAAATCTGGCAAAATCGCTGCTGTGTTTGTTGAACCTATCCAGGGTGAAGGTGGGATAAATAGTGCAACTAAAGAATTTTTGCAATCCTTGCGTGGTGCTTGTGATGATTCAGGTTCTCTTCTGGTCTTTGATGAGGTTCAATGTGGGTTGGGTCGAACTGGTTATCTCTGGGCGCATGAAGCTTATGGTGTATTCCCAGATATAATGACTCTGGCCAAGCCTCTTGCAGGAGGACTTCCCATAGGAGCTGTATTAGTGACTGAAAAGGTTGCTGCTTCAATGAAGTATGGAGAGCATGGAAGCACTTTTGCTGGGGGACCCCTTATCTGCAATGCTGCCCTTGCGGTCTTGGACAAAATTTCCAAGCCTGAGTTTCTCAAAAGCGTCTCAGAGAAAGGTCAGTACTTCAAAGAAGTGCTGACAAAGAAGCTGGGCACAAATCCACATGTGAGAGAAGTACGGGGTTTGGGTCTCATTGTTGGAGTAGAGCTGGACGTGTCTGCTTCACCGCTTGTCGATGCCTGTAGGAATTCTGGTCTTCTGATAATAACAGCCGGAAAAGGAAATGTCCTCAGGCTTGTGCCGCCGTTGATCATCTCTAAGCCAGAATTGGAGCATGCAGCTGAGATTTTGCTTGAATGTTTGCCTGCCCTTGATGGCTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003992 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0019752 GO:0019842 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0036094 GO:0042742 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048731 GO:0048856 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0070279 GO:0071704 GO:0080022 GO:0097159 GO:0098542 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

452

Amino Acids

48.57

Weight (kDa)

8.03

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_3	PF00202	67 - 445	4.1e-116	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80600
fragaria_vesca	FvH4_3g15500 FvH4_3g15500 FvH4_6g29020
malus_domestica	MD05G1222800.v1.1 MD05G1223000.v1.1 MD10G1204400.v1.1 MD17G1219100.v1.1
prunus_persica	Prupe.3G094600_v2.0.a1 Prupe.4G137500_v2.0.a1
pyrus_communis	pycom05g20540
rosa_chinensis	RchiOBHm_Chr2g0133691 RchiOBHm_Chr5g0026121
rosa_laevigata	RLG00000019356 RLG00000032903
rosa_multiflora	Rmu_sc0000924.1_g000010 Rmu_sc0002806.1_g000006 Rmu_sc0002909.1_g000021 Rmu_sc0007285.1_g000005
rosa_roxburghii	Rroxscaffold_1G00053190 Rroxscaffold_2G00110900
rosa_rugosa	Rorug02G0313000 Rorug05G0090700
rosa_samantha	Rh2AG366400 Rh2BG372000 Rh2CG349500 Rh2DG388900 Rh5CG199400 Rh5DG182000
rosa_wichuraiana	Rw0G015720 Rw2G029810 Rw5G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	580
AccB1I	GGYRCC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	2 cut(s)	38, 57
AccIII	TCCGGA	2 cut(s)	313, 452
AclWI	GGATC	3 cut(s)	239, 305, 318
AcoI	YGGCCR	1 cut(s)	903
AcsI	RAATTY	5 cut(s)	482, 539, 764, 1047, 1219
AcuI	CTGAAG	2 cut(s)	270, 480
AcvI	CACGTG	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	5 cut(s)	194, 242, 669, 1094, 1149
AfiI	CCNNNNNNNGG	3 cut(s)	60, 731, 917
AflIII	ACRYGT	2 cut(s)	1135, 1185
AgeI	ACCGGT	1 cut(s)	205
AgsI	TTSAA	6 cut(s)	510, 722, 830, 969, 1099, 1328
AhdI	GACNNNNNGTC	1 cut(s)	274
AhlI	ACTAGT	1 cut(s)	596
AjiI	CACGTC	2 cut(s)	103, 1186
AjnI	CCWGG	4 cut(s)	150, 387, 637, 729
AleI	CACNNNNGTG	2 cut(s)	71, 85
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	2 cut(s)	1081, 1166
AlwI	GGATC	3 cut(s)	239, 305, 318
Aor13HI	TCCGGA	2 cut(s)	313, 452
AoxI	GGCC	2 cut(s)	327, 903
ApeKI	GCWGC	6 cut(s)	473, 674, 707, 962, 1025, 1310
ApoI	RAATTY	5 cut(s)	482, 539, 764, 1047, 1219
AsiGI	ACCGGT	1 cut(s)	205
AspLEI	GCGC	2 cut(s)	298, 865
AspS9I	GGNCC	3 cut(s)	63, 327, 1007
AsuHPI	GGTGA	7 cut(s)	85, 169, 223, 346, 609, 746, 1188
AvaII	GGWCC	2 cut(s)	63, 1007
AxyI	CCTNAGG	1 cut(s)	1262
BaeGI	GKGCMC	2 cut(s)	108, 1127
BalI	TGGCCA	1 cut(s)	905
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	124
BauI	CACGAG	1 cut(s)	111
BbrPI	CACGTG	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	1220
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	6 cut(s)	460, 661, 694, 949, 1012, 1322
BccI	CCATC	3 cut(s)	154, 571, 1340
BceAI	ACGGC	3 cut(s)	314, 422, 1261
BciT130I	CCWGG	4 cut(s)	152, 389, 639, 731
BciVI	GTATCC	1 cut(s)	315
BclI	TGATCA	1 cut(s)	1281
BcoDI	GTCTC	2 cut(s)	1081, 1166
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	3 cut(s)	29, 219, 597
BfmI	CTRYAG	1 cut(s)	1213
BfuI	GTATCC	1 cut(s)	315
BmcAI	AGTACT	1 cut(s)	1094
Bme1390I	CCNGG	4 cut(s)	152, 389, 639, 731
Bme18I	GGWCC	2 cut(s)	63, 1007
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmgBI	CACGTC	2 cut(s)	103, 1186
BmgT120I	GGNCC	3 cut(s)	63, 327, 1007
BmiI	GGNNCC	5 cut(s)	126, 149, 312, 1008, 1009
BmrFI	CCNGG	4 cut(s)	152, 389, 639, 731
BmsI	GCATC	1 cut(s)	1198
BpiI	GAAGAC	1 cut(s)	1220
BpmI	CTGGAG	1 cut(s)	660
BsaAI	YACGTR	1 cut(s)	83
BsaHI	GRCGYC	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	1166
BsaJI	CCNNGG	3 cut(s)	387, 565, 730
BsaWI	WCCGGW	3 cut(s)	205, 313, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 731, 917
Bse118I	RCCGGY	2 cut(s)	127, 205
Bse1I	ACTGG	1 cut(s)	853
Bse21I	CCTNAGG	1 cut(s)	1262
Bse3DI	GCAATG	2 cut(s)	373, 1027
BseAI	TCCGGA	2 cut(s)	313, 452
BseBI	CCWGG	4 cut(s)	152, 389, 639, 731
BseDI	CCNNGG	3 cut(s)	387, 565, 730
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	3 cut(s)	60, 731, 917
BseMI	GCAATG	2 cut(s)	373, 1027
BseMII	CTCAG	5 cut(s)	507, 1050, 1092, 1276, 1305
BseNI	ACTGG	1 cut(s)	853
BseSI	GKGCMC	2 cut(s)	108, 1127
BseXI	GCAGC	6 cut(s)	460, 661, 694, 949, 1012, 1322
BseYI	CCCAGC	2 cut(s)	1001, 1120
Bsh1236I	CGCG	2 cut(s)	38, 57
BshFI	GGCC	2 cut(s)	329, 905
BshNI	GGYRCC	1 cut(s)	124
BshTI	ACCGGT	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	5 cut(s)	128, 206, 314, 453, 1245
BslFI	GGGAC	2 cut(s)	202, 1020
BslI	CCNNNNNNNGG	3 cut(s)	60, 731, 917
BsmAI	GTCTC	2 cut(s)	1081, 1166
BsmBI	CGTCTC	1 cut(s)	1081
BsmFI	GGGAC	2 cut(s)	202, 1020
BsnI	GGCC	2 cut(s)	329, 905
Bso31I	GGTCTC	1 cut(s)	1166
Bsp1286I	GDGCHC	3 cut(s)	108, 354, 1127
Bsp13I	TCCGGA	2 cut(s)	313, 452
Bsp1407I	TGTACA	1 cut(s)	667
Bsp143I	GATC	6 cut(s)	115, 213, 244, 310, 614, 1281
Bsp19I	CCATGG	1 cut(s)	565
BspANI	GGCC	2 cut(s)	329, 905
BspCNI	CTCAG	5 cut(s)	508, 1051, 1091, 1275, 1306
BspEI	TCCGGA	2 cut(s)	313, 452
BspFNI	CGCG	2 cut(s)	38, 57
BspLI	GGNNCC	5 cut(s)	126, 149, 312, 1008, 1009
BspPI	GGATC	3 cut(s)	239, 305, 318
BspT107I	GGYRCC	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	1166
BsrDI	GCAATG	2 cut(s)	373, 1027
BsrFI	RCCGGY	2 cut(s)	127, 205
BsrGI	TGTACA	1 cut(s)	667
BsrI	ACTGG	1 cut(s)	853
BssAI	RCCGGY	2 cut(s)	127, 205
BssECI	CCNNGG	3 cut(s)	387, 565, 730
BssMI	GATC	6 cut(s)	115, 213, 244, 310, 614, 1281
BssNI	GRCGYC	1 cut(s)	77
BssSI	CACGAG	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	565
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	4 cut(s)	152, 389, 639, 731
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	2 cut(s)	167, 813
BstACI	GRCGYC	1 cut(s)	77
BstAPI	GCANNNNNTGC	1 cut(s)	778
BstAUI	TGTACA	1 cut(s)	667
BstBAI	YACGTR	1 cut(s)	83
BstC8I	GCNNGC	8 cut(s)	108, 129, 342, 399, 418, 531, 1308, 1338
BstDEI	CTNAG	7 cut(s)	516, 652, 1059, 1078, 1262, 1290, 1314
BstDSI	CCRYGG	1 cut(s)	565
BstENI	CCTNNNNNAGG	1 cut(s)	915
BstF5I	GGATG	1 cut(s)	236
BstFNI	CGCG	2 cut(s)	38, 57
BstHHI	GCGC	2 cut(s)	298, 865
BstKTI	GATC	6 cut(s)	118, 216, 247, 313, 617, 1284
BstMAI	GTCTC	2 cut(s)	1081, 1166
BstMBI	GATC	6 cut(s)	115, 213, 244, 310, 614, 1281
BstMWI	GCNNNNNNNGC	8 cut(s)	137, 293, 470, 634, 778, 869, 1031, 1273
BstNI	CCWGG	4 cut(s)	152, 389, 639, 731
BstNSI	RCATGY	2 cut(s)	1139, 1310
BstSCI	CCNGG	4 cut(s)	150, 387, 637, 729
BstSFI	CTRYAG	1 cut(s)	1213
BstSLI	GKGCMC	2 cut(s)	108, 1127
BstUI	CGCG	2 cut(s)	38, 57
BstV1I	GCAGC	6 cut(s)	460, 661, 694, 949, 1012, 1322
BstV2I	GAAGAC	1 cut(s)	1220
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	1262
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	329, 905
BtgI	CCRYGG	1 cut(s)	565
BtrI	CACGTC	2 cut(s)	103, 1186
BtsCI	GGATG	1 cut(s)	236
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	8 cut(s)	108, 129, 342, 399, 418, 531, 1308, 1338
CfoI	GCGC	2 cut(s)	298, 865
Cfr10I	RCCGGY	2 cut(s)	127, 205
Cfr13I	GGNCC	3 cut(s)	63, 327, 1007
CseI	GACGC	2 cut(s)	85, 1063
Csp6I	GTAC	5 cut(s)	193, 241, 668, 1093, 1148
CspAI	ACCGGT	1 cut(s)	205
CviAII	CATG	9 cut(s)	305, 347, 359, 566, 634, 866, 986, 1136, 1307
CviQI	GTAC	5 cut(s)	193, 241, 668, 1093, 1148
DdeI	CTNAG	7 cut(s)	516, 652, 1059, 1078, 1262, 1290, 1314
DpnI	GATC	6 cut(s)	117, 215, 246, 312, 616, 1283
DpnII	GATC	6 cut(s)	115, 213, 244, 310, 614, 1281
DrdI	GACNNNNNNGTC	1 cut(s)	580
DriI	GACNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	580
EaeI	YGGCCR	1 cut(s)	903
Eam1104I	CTCTTC	2 cut(s)	167, 813
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	2 cut(s)	167, 813
EciI	GGCGGA	1 cut(s)	182
Eco130I	CCWWGG	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	1166
Eco47I	GGWCC	2 cut(s)	63, 1007
Eco57I	CTGAAG	2 cut(s)	270, 480
Eco72I	CACGTG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	1262
EcoNI	CCTNNNNNAGG	1 cut(s)	915
EcoO109I	RGGNCCY	1 cut(s)	1007
EcoRI	GAATTC	2 cut(s)	539, 1219
EcoRII	CCWGG	4 cut(s)	150, 387, 637, 729
EcoT14I	CCWWGG	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	565
Esp3I	CGTCTC	1 cut(s)	1081
FaeI	CATG	9 cut(s)	308, 350, 362, 569, 637, 869, 989, 1139, 1310
FaqI	GGGAC	2 cut(s)	202, 1020
FatI	CATG	9 cut(s)	304, 346, 358, 565, 633, 865, 985, 1135, 1306
FauI	CCCGC	3 cut(s)	31, 62, 115
FbaI	TGATCA	1 cut(s)	1281
FblI	GTMKAC	1 cut(s)	372
FokI	GGATG	1 cut(s)	243
FspBI	CTAG	3 cut(s)	29, 219, 597
GlaI	GCGC	2 cut(s)	297, 864
GsaI	CCCAGC	2 cut(s)	1005, 1124
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	2 cut(s)	329, 905
HapII	CCGG	5 cut(s)	128, 206, 314, 453, 1245
HgaI	GACGC	2 cut(s)	85, 1063
HhaI	GCGC	2 cut(s)	298, 865
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	9 cut(s)	308, 350, 362, 569, 637, 869, 989, 1139, 1310
Hin6I	GCGC	2 cut(s)	296, 863
HinP1I	GCGC	2 cut(s)	296, 863
HindIII	AAGCTT	1 cut(s)	870
HinfI	GANTC	3 cut(s)	642, 797, 898
HpaII	CCGG	5 cut(s)	128, 206, 314, 453, 1245
HphI	GGTGA	7 cut(s)	85, 169, 223, 346, 609, 746, 1188
Hpy166II	GTNNAC	2 cut(s)	100, 373
Hpy188I	TCNGA	2 cut(s)	1081, 1233
Hpy188III	TCNNGA	3 cut(s)	248, 314, 453
Hpy8I	GTNNAC	2 cut(s)	100, 373
HpyAV	CCTTC	2 cut(s)	245, 731
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	5 cut(s)	82, 96, 102, 191, 1185
HpyCH4V	TGCA	8 cut(s)	488, 533, 677, 755, 772, 917, 1020, 1310
HpyF10VI	GCNNNNNNNGC	8 cut(s)	137, 293, 470, 634, 778, 869, 1031, 1273
HpyF3I	CTNAG	7 cut(s)	516, 652, 1059, 1078, 1262, 1290, 1314
HpySE526I	ACGT	5 cut(s)	82, 96, 102, 191, 1185
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	9 cut(s)	308, 350, 362, 569, 637, 869, 989, 1139, 1310
HspAI	GCGC	2 cut(s)	296, 863
KflI	GGGWCCC	1 cut(s)	1007
Kpn2I	TCCGGA	2 cut(s)	313, 452
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	1281
Kzo9I	GATC	6 cut(s)	115, 213, 244, 310, 614, 1281
LmnI	GCTCC	6 cut(s)	21, 147, 394, 425, 935, 1303
Lsp1109I	GCAGC	6 cut(s)	460, 661, 694, 949, 1012, 1322
LweI	GCATC	1 cut(s)	1198
MaeI	CTAG	3 cut(s)	29, 219, 597
MaeII	ACGT	5 cut(s)	82, 96, 102, 191, 1185
MaeIII	GTNAC	4 cut(s)	73, 331, 643, 946
MalI	GATC	6 cut(s)	117, 215, 246, 312, 616, 1283
MboI	GATC	6 cut(s)	115, 213, 244, 310, 614, 1281
MboII	GAAGA	4 cut(s)	184, 532, 800, 1220
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	3 cut(s)	108, 354, 1127
MlsI	TGGCCA	1 cut(s)	905
MluCI	AATT	8 cut(s)	236, 482, 539, 687, 764, 1047, 1219, 1298
MluNI	TGGCCA	1 cut(s)	905
MlyI	GAGTC	2 cut(s)	651, 892
MmeI	TCCRAC	1 cut(s)	1150
MnlI	CCTC	9 cut(s)	148, 157, 168, 564, 639, 817, 914, 921, 1271
Mox20I	TGGCCA	1 cut(s)	905
MroI	TCCGGA	2 cut(s)	313, 452
MroNI	GCCGGC	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	905
MseI	TTAA	2 cut(s)	93, 690
MslI	CAYNNNNRTG	2 cut(s)	71, 85
Msp20I	TGGCCA	1 cut(s)	905
MspA1I	CMGCKG	1 cut(s)	1313
MspI	CCGG	5 cut(s)	128, 206, 314, 453, 1245
MspR9I	CCNGG	4 cut(s)	152, 389, 639, 731
MvaI	CCWGG	4 cut(s)	152, 389, 639, 731
MvnI	CGCG	2 cut(s)	38, 57
MwoI	GCNNNNNNNGC	8 cut(s)	137, 293, 470, 634, 778, 869, 1031, 1273
NaeI	GCCGGC	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	565
NdeII	GATC	6 cut(s)	115, 213, 244, 310, 614, 1281
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	9 cut(s)	308, 350, 362, 569, 637, 869, 989, 1139, 1310
NlaIV	GGNNCC	5 cut(s)	126, 149, 312, 1008, 1009
NmuCI	GTSAC	3 cut(s)	73, 643, 946
NspI	RCATGY	2 cut(s)	1139, 1310
OliI	CACNNNNGTG	2 cut(s)	71, 85
PaeI	GCATGC	1 cut(s)	1310
PciI	ACATGT	1 cut(s)	1135
PdiI	GCCGGC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	797
PflFI	GACNNNGTC	1 cut(s)	434
PinAI	ACCGGT	1 cut(s)	205
PleI	GAGTC	2 cut(s)	650, 892
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
PpsI	GAGTC	2 cut(s)	650, 892
Ppu21I	YACGTR	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	1007
PscI	ACATGT	1 cut(s)	1135
Psp5II	RGGWCCY	1 cut(s)	1007
Psp6I	CCWGG	4 cut(s)	150, 387, 637, 729
PspCI	CACGTG	1 cut(s)	83
PspFI	CCCAGC	2 cut(s)	1001, 1120
PspGI	CCWGG	4 cut(s)	150, 387, 637, 729
PspN4I	GGNNCC	5 cut(s)	126, 149, 312, 1008, 1009
PspPI	GGNCC	3 cut(s)	63, 327, 1007
PspPPI	RGGWCCY	1 cut(s)	1007
PsuI	RGATCY	1 cut(s)	310
PsyI	GACNNNGTC	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	1313
RsaI	GTAC	5 cut(s)	194, 242, 669, 1094, 1149
RsaNI	GTAC	5 cut(s)	193, 241, 668, 1093, 1148
RseI	CAYNNNNRTG	2 cut(s)	71, 85
SaqAI	TTAA	2 cut(s)	93, 690
Sau3AI	GATC	6 cut(s)	115, 213, 244, 310, 614, 1281
Sau96I	GGNCC	3 cut(s)	63, 327, 1007
ScaI	AGTACT	1 cut(s)	1094
SchI	GAGTC	2 cut(s)	651, 892
ScrFI	CCNGG	4 cut(s)	152, 389, 639, 731
SduI	GDGCHC	3 cut(s)	108, 354, 1127
SfaNI	GCATC	1 cut(s)	1198
SfcI	CTRYAG	1 cut(s)	1213
SgrAI	CRCCGGYG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	63, 1007
SmiMI	CAYNNNNRTG	2 cut(s)	71, 85
SpeI	ACTAGT	1 cut(s)	596
SphI	GCATGC	1 cut(s)	1310
Sse9I	AATT	8 cut(s)	236, 482, 539, 687, 764, 1047, 1219, 1298
SspMI	CTAG	3 cut(s)	29, 219, 597
StyD4I	CCNGG	4 cut(s)	150, 387, 637, 729
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	5 cut(s)	85, 99, 105, 194, 1188
TaqI	TCGA	2 cut(s)	844, 1206
TasI	AATT	8 cut(s)	236, 482, 539, 687, 764, 1047, 1219, 1298
TatI	WGTACW	2 cut(s)	667, 1092
TauI	GCSGC	4 cut(s)	134, 137, 140, 1276
TfiI	GAWTC	1 cut(s)	797
Tru1I	TTAA	2 cut(s)	93, 690
Tru9I	TTAA	2 cut(s)	93, 690
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	3 cut(s)	73, 643, 946
TseI	GCWGC	6 cut(s)	473, 674, 707, 962, 1025, 1310
Tsp45I	GTSAC	3 cut(s)	73, 643, 946
TspDTI	ATGAA	4 cut(s)	483, 532, 882, 986
TspRI	CASTG	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	63, 1007
XagI	CCTNNNNNAGG	1 cut(s)	915
XapI	RAATTY	5 cut(s)	482, 539, 764, 1047, 1219
XceI	RCATGY	2 cut(s)	1139, 1310
XcmI	CCANNNNNNNNNTGG	2 cut(s)	388, 737
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	3 cut(s)	29, 219, 597
ZrmI	AGTACT	1 cut(s)	1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.