Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004431

Physical Location & Seq

Genomic Coordinates Forward (+)

7960605 .. 7963107

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0090700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1773 bp

ATGGAGATGGAGAAGAAGGTTGAGTTTGTTGAAGGAAAGGTGGATTGGAAGGGAAGGACAGCTGTGAAACATAAACATGGAGGAATGAGAACTGCTTTTCTCATACTTGCTACATTTGGTTTTGAGAACATGGCGACTTTGGCTTTGGCGGTGAACTTGGTTACATACTTCAATGGGGTGATGCATTTTGAAATATCTGATGCCGCTAACCAGCTTACTAACTTCGCCGGCACTGGTTATATTCTCTCCATTCTCATGGCCATCCTTGCAGACACCTTCTTCGGCAGATTCAAAACCCTTCTGATTTCAGCTTGCTTCGAGTTCGTGGGGCTAGGATTACTAACTGTGCAAGCTCACTATCCAAGTCTCCTGCCACCAGTCTGTAATGTGTTTGATCCAACTTCTTCTTGCGAGAAAGTTACTGGGGGCAATGCTGCTTTGCTTTTCATTGCTCTCTACATGTTGGCAGCCGGAGCTGCAGGAGTCAAAGCTACATTGCCATCACATGGTGCTGATCAATTCGAAGAAAAAGATCCAAAAGAGGCGAGGCAGATGTCGAGCTTCTTCAACCTGCTCTTACTAGCCGTATGTCTGGGTGGTGTGGTCAGCCTAACACTAATTGTGTGGAGCCAAGACAATAAAGGATGGGATTGGGGATTTGGGATTTCTACAATCGCCATGTTCTTGGGTGTCGTCGTCTTCTTTTCAGGATTGCCTATGTACCGAATACAAGCTATTCGAGGAACTAGTGCAATAATCGAAATTATACAGGTGTATGTTGCAGCGGTCCGCAACAGAAATCTCACCCTTCCTGAGAACCCTTCAGATCTCTATGAGATCGAGGCAGACAAGGAAGCTTCACTTGAAGAAGAATTCCTACCTCACAGACCCATTTTCGGCTTCTTGGACAAGGCAGCAATTAAACGAGGGCAAAATAATAATGCCGAATCTCTAAACTCTTGGAACCTTTGCAGAGTCACCCAAGTAGAAAATGCAAAGATAATACTAGGAATGGTGCCCATATTCCTATGCACAATCATAATGACTCTTTGCTTGGCTCAGCTCCAAACCTTTTCAATCCAACAAGGCCTCACCATGGACACAAGCATCACCAAAAACTTCAAAATCCCACCAGCCTCACTCCCCATCATCCCAATCATGTTCCTCGTGATCATAATCCCCGTCTACGACAGAATCTTTGTCCCCCTGGCCAGCAAATTCTCCGGCATTCCCTCCGGAATCACCCATCTACAGCGCATAGGCGTCGGCCTAGTCCTCTCCTGTATCTCCATGGGAGTGGCTGGAATCATGGAAGTCAAGAGAAAAGACGTGGCGAGAGACCACAACATGCTGGATGCAATCCCAGTGCTGCAGCCACTGCCCATCAGTACATTCTGGCTGTCATTCCAGTACTTCATTTTCGGAATTGCTGACATGTTCACCTACGTCGGTCTTCTCGAGTTTTTCTACTCCGAGGCACCAAAAGGGCTCAAGTCGATCTCGACTTGCTTCCTATGGAGCTCAATGGCACTTGGGTACTTCTTCAGCACAGTGTTGGTTAATATTGTGAATGCTGCAACACATGGGAGCAATGGGGGTTGGTTGGCTGGGAACAACATCAACAGGAACCACTTGAACCTTTTCTATTGGTTGCTTTCAGGGATGAGCTTCTTGAACTTCTTCATCTATCTGTTTGTTTCAAGGAGGTACAAGTATAGGCCAGGGAGTCCCATGCTGGCCTCAAAAGAGGACAAGGAGGAGGATGAGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

590

Amino Acids

65.4

Weight (kDa)

6.57

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	97 - 528	2.7e-85	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80600
fragaria_vesca	FvH4_3g15500 FvH4_3g15500 FvH4_6g29020
malus_domestica	MD05G1222800.v1.1 MD05G1223000.v1.1 MD10G1204400.v1.1 MD17G1219100.v1.1
prunus_persica	Prupe.3G094600_v2.0.a1 Prupe.4G137500_v2.0.a1
pyrus_communis	pycom05g20540
rosa_chinensis	RchiOBHm_Chr2g0133691 RchiOBHm_Chr5g0026121
rosa_laevigata	RLG00000019356 RLG00000032903
rosa_multiflora	Rmu_sc0000924.1_g000010 Rmu_sc0002806.1_g000006 Rmu_sc0002909.1_g000021 Rmu_sc0007285.1_g000005
rosa_roxburghii	Rroxscaffold_1G00053190 Rroxscaffold_2G00110900
rosa_rugosa	Rorug02G0313000 Rorug05G0090700
rosa_samantha	Rh2AG366400 Rh2BG372000 Rh2CG349500 Rh2DG388900 Rh5CG199400 Rh5DG182000
rosa_wichuraiana	Rw0G015720 Rw2G029810 Rw5G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	579
AccB1I	GGYRCC	2 cut(s)	1015, 1477
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccI	GTMKAC	1 cut(s)	1185
AccIII	TCCGGA	1 cut(s)	1235
AciI	CCGC	4 cut(s)	149, 204, 785, 790
AclWI	GGATC	2 cut(s)	389, 527
AcoI	YGGCCR	2 cut(s)	258, 1209
AcsI	RAATTY	2 cut(s)	872, 1217
AcuI	CTGAAG	2 cut(s)	807, 1528
AcyI	GRCGYC	1 cut(s)	1263
AdeI	CACNNNGTG	1 cut(s)	509
AfaI	GTAC	5 cut(s)	722, 1390, 1412, 1538, 1709
AfiI	CCNNNNNNNGG	3 cut(s)	506, 896, 1096
AflIII	ACRYGT	2 cut(s)	459, 1434
AhlI	ACTAGT	1 cut(s)	746
AjiI	CACGTC	1 cut(s)	1330
AjnI	CCWGG	2 cut(s)	1206, 1720
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
Alw21I	GWGCWC	2 cut(s)	1523, 1770
Alw26I	GTCTC	2 cut(s)	371, 1332
AlwI	GGATC	2 cut(s)	389, 527
AlwNI	CAGNNNCTG	1 cut(s)	1378
Ama87I	CYCGRG	1 cut(s)	1457
Aor13HI	TCCGGA	1 cut(s)	1235
AoxI	GGCC	6 cut(s)	258, 1087, 1209, 1267, 1718, 1737
ApeKI	GCWGC	8 cut(s)	434, 467, 476, 782, 914, 1369, 1372, 1574
ApoI	RAATTY	2 cut(s)	872, 1217
ArsI	GACNNNNNNTTYG	6 cut(s)	127, 159, 263, 295, 1181, 1213
Asp700I	GAANNNNTTC	2 cut(s)	1640, 1679
AspLEI	GCGC	1 cut(s)	1257
AspS9I	GGNCC	1 cut(s)	787
AsuHPI	GGTGA	8 cut(s)	163, 190, 796, 970, 1084, 1102, 1234, 1432
AsuII	TTCGAA	1 cut(s)	522
AvaI	CYCGRG	1 cut(s)	1457
AvaII	GGWCC	1 cut(s)	787
BaeGI	GKGCMC	1 cut(s)	1020
BalI	TGGCCA	2 cut(s)	260, 1211
BanI	GGYRCC	2 cut(s)	1015, 1477
BanII	GRGCYC	3 cut(s)	1491, 1523, 1770
BarI	GAAGNNNNNNTAC	2 cut(s)	861, 893
BauI	CACGAG	1 cut(s)	1166
BbsI	GAAGAC	2 cut(s)	691, 1445
Bbv12I	GWGCWC	2 cut(s)	1523, 1770
BbvI	GCAGC	8 cut(s)	421, 463, 479, 794, 926, 1356, 1384, 1561
BccI	CCATC	6 cut(s)	269, 508, 639, 1154, 1254, 1391
BceAI	ACGGC	1 cut(s)	569
BcgI	CGANNNNNNTGC	2 cut(s)	1246, 1280
BciT130I	CCWGG	2 cut(s)	1208, 1722
BclI	TGATCA	2 cut(s)	514, 1170
BcoDI	GTCTC	2 cut(s)	371, 1332
BcuI	ACTAGT	1 cut(s)	746
BfaI	CTAG	5 cut(s)	332, 581, 747, 1007, 1271
BfmI	CTRYAG	3 cut(s)	477, 1250, 1370
BfuAI	ACCTGC	1 cut(s)	579
BglII	AGATCT	1 cut(s)	826
BisI	GCNGC	9 cut(s)	204, 435, 468, 477, 783, 915, 1370, 1373, 1575
BlpI	GCTNAGC	1 cut(s)	1059
BlsI	GCNGC	9 cut(s)	205, 436, 469, 478, 784, 916, 1371, 1374, 1576
BmcAI	AGTACT	1 cut(s)	1412
Bme1390I	CCNGG	2 cut(s)	1208, 1722
Bme18I	GGWCC	1 cut(s)	787
BmeT110I	CYCGRG	1 cut(s)	1457
BmgBI	CACGTC	1 cut(s)	1330
BmgT120I	GGNCC	1 cut(s)	787
BmiI	GGNNCC	5 cut(s)	629, 965, 1017, 1479, 1628
BmrFI	CCNGG	2 cut(s)	1208, 1722
BmrI	ACTGGG	2 cut(s)	432, 1358
BmsI	GCATC	4 cut(s)	171, 190, 1116, 1345
BmuI	ACTGGG	2 cut(s)	432, 1358
BpiI	GAAGAC	2 cut(s)	691, 1445
Bpu1102I	GCTNAGC	1 cut(s)	1059
Bpu14I	TTCGAA	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	1475
BsaBI	GATNNNNATC	1 cut(s)	1175
BsaHI	GRCGYC	1 cut(s)	1263
BsaI	GGTCTC	1 cut(s)	1332
BsaJI	CCNNGG	5 cut(s)	1095, 1206, 1290, 1473, 1721
BsaWI	WCCGGW	1 cut(s)	1235
Bsc4I	CCNNNNNNNGG	3 cut(s)	506, 896, 1096
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	5 cut(s)	238, 377, 427, 1364, 1408
Bse3DI	GCAATG	4 cut(s)	436, 447, 494, 1597
Bse8I	GATNNNNATC	1 cut(s)	1175
BseAI	TCCGGA	1 cut(s)	1235
BseBI	CCWGG	2 cut(s)	1208, 1722
BseDI	CCNNGG	5 cut(s)	1095, 1206, 1290, 1473, 1721
BseGI	GGATG	6 cut(s)	261, 650, 1149, 1360, 1668, 1768
BseJI	GATNNNNATC	1 cut(s)	1175
BseLI	CCNNNNNNNGG	3 cut(s)	506, 896, 1096
BseMI	GCAATG	4 cut(s)	436, 447, 494, 1597
BseMII	CTCAG	2 cut(s)	804, 1073
BseNI	ACTGG	5 cut(s)	238, 377, 427, 1364, 1408
BseRI	GAGGAG	1 cut(s)	1772
BseSI	GKGCMC	1 cut(s)	1020
BseXI	GCAGC	8 cut(s)	421, 463, 479, 794, 926, 1356, 1384, 1561
BseYI	CCCAGC	1 cut(s)	1607
BshFI	GGCC	6 cut(s)	260, 1089, 1211, 1269, 1720, 1739
BshNI	GGYRCC	2 cut(s)	1015, 1477
BsiHKAI	GWGCWC	2 cut(s)	1523, 1770
BsiHKCI	CYCGRG	1 cut(s)	1457
BsiSI	CCGG	4 cut(s)	228, 471, 1224, 1236
BslFI	GGGAC	2 cut(s)	1187, 1713
BslI	CCNNNNNNNGG	3 cut(s)	506, 896, 1096
BsmAI	GTCTC	2 cut(s)	371, 1332
BsmFI	GGGAC	2 cut(s)	1187, 1713
BsmI	GAATGC	2 cut(s)	1227, 1576
BsnI	GGCC	6 cut(s)	260, 1089, 1211, 1269, 1720, 1739
Bso31I	GGTCTC	1 cut(s)	1332
BsoBI	CYCGRG	1 cut(s)	1457
Bsp119I	TTCGAA	1 cut(s)	522
Bsp1286I	GDGCHC	4 cut(s)	1020, 1491, 1523, 1770
Bsp13I	TCCGGA	1 cut(s)	1235
Bsp143I	GATC	7 cut(s)	394, 514, 532, 826, 837, 1170, 1497
Bsp1720I	GCTNAGC	1 cut(s)	1059
Bsp19I	CCATGG	2 cut(s)	1095, 1290
BspACI	CCGC	4 cut(s)	149, 204, 785, 790
BspANI	GGCC	6 cut(s)	260, 1089, 1211, 1269, 1720, 1739
BspCNI	CTCAG	2 cut(s)	805, 1072
BspEI	TCCGGA	1 cut(s)	1235
BspLI	GGNNCC	5 cut(s)	629, 965, 1017, 1479, 1628
BspMAI	CTGCAG	2 cut(s)	481, 1374
BspMI	ACCTGC	1 cut(s)	579
BspPI	GGATC	2 cut(s)	389, 527
BspT104I	TTCGAA	1 cut(s)	522
BspT107I	GGYRCC	2 cut(s)	1015, 1477
BspTNI	GGTCTC	1 cut(s)	1332
BsrDI	GCAATG	4 cut(s)	436, 447, 494, 1597
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	5 cut(s)	238, 377, 427, 1364, 1408
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	5 cut(s)	1095, 1206, 1290, 1473, 1721
BssMI	GATC	7 cut(s)	394, 514, 532, 826, 837, 1170, 1497
BssNI	GRCGYC	1 cut(s)	1263
BssSI	CACGAG	1 cut(s)	1166
BssT1I	CCWWGG	2 cut(s)	1095, 1290
Bst2BI	CACGAG	1 cut(s)	1166
Bst2UI	CCWGG	2 cut(s)	1208, 1722
Bst4CI	ACNGT	2 cut(s)	346, 1552
BstACI	GRCGYC	1 cut(s)	1263
BstAPI	GCANNNNNTGC	1 cut(s)	1378
BstBI	TTCGAA	1 cut(s)	522
BstC8I	GCNNGC	5 cut(s)	229, 313, 351, 1213, 1737
BstDEI	CTNAG	2 cut(s)	813, 1059
BstDSI	CCRYGG	2 cut(s)	1095, 1290
BstF5I	GGATG	6 cut(s)	261, 650, 1149, 1360, 1668, 1768
BstHHI	GCGC	1 cut(s)	1257
BstKTI	GATC	7 cut(s)	397, 517, 535, 829, 840, 1173, 1500
BstMAI	GTCTC	2 cut(s)	371, 1332
BstMBI	GATC	7 cut(s)	394, 514, 532, 826, 837, 1170, 1497
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 266, 473, 476, 1378
BstNI	CCWGG	2 cut(s)	1208, 1722
BstNSI	RCATGY	3 cut(s)	463, 1351, 1438
BstSCI	CCNGG	2 cut(s)	1206, 1720
BstSFI	CTRYAG	3 cut(s)	477, 1250, 1370
BstSLI	GKGCMC	1 cut(s)	1020
BstV1I	GCAGC	8 cut(s)	421, 463, 479, 794, 926, 1356, 1384, 1561
BstV2I	GAAGAC	2 cut(s)	691, 1445
BstX2I	RGATCY	2 cut(s)	532, 826
BstXI	CCANNNNNNTGG	3 cut(s)	256, 685, 1297
BstYI	RGATCY	2 cut(s)	532, 826
BsuRI	GGCC	6 cut(s)	260, 1089, 1211, 1269, 1720, 1739
BtgI	CCRYGG	2 cut(s)	1095, 1290
BtrI	CACGTC	1 cut(s)	1330
BtsCI	GGATG	6 cut(s)	261, 650, 1149, 1360, 1668, 1768
BtsI	GCAGTG	1 cut(s)	1376
BtsIMutI	CAGTG	4 cut(s)	231, 1371, 1376, 1557
BveI	ACCTGC	1 cut(s)	579
Cac8I	GCNNGC	5 cut(s)	229, 313, 351, 1213, 1737
CaiI	CAGNNNCTG	1 cut(s)	1378
CfoI	GCGC	1 cut(s)	1257
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	787
CpoI	CGGWCCG	1 cut(s)	787
CseI	GACGC	1 cut(s)	1252
Csp6I	GTAC	5 cut(s)	721, 1389, 1411, 1537, 1708
CspI	CGGWCCG	1 cut(s)	787
CviQI	GTAC	5 cut(s)	721, 1389, 1411, 1537, 1708
DdeI	CTNAG	2 cut(s)	813, 1059
DpnI	GATC	7 cut(s)	396, 516, 534, 828, 839, 1172, 1499
DpnII	GATC	7 cut(s)	394, 514, 532, 826, 837, 1170, 1497
DraIII	CACNNNGTG	1 cut(s)	509
EaeI	YGGCCR	2 cut(s)	258, 1209
Ecl136II	GAGCTC	2 cut(s)	1521, 1768
Eco130I	CCWWGG	2 cut(s)	1095, 1290
Eco147I	AGGCCT	1 cut(s)	1089
Eco24I	GRGCYC	3 cut(s)	1491, 1523, 1770
Eco31I	GGTCTC	1 cut(s)	1332
Eco47I	GGWCC	1 cut(s)	787
Eco53kI	GAGCTC	2 cut(s)	1521, 1768
Eco57I	CTGAAG	2 cut(s)	807, 1528
Eco88I	CYCGRG	1 cut(s)	1457
EcoICRI	GAGCTC	2 cut(s)	1521, 1768
EcoRI	GAATTC	1 cut(s)	872
EcoRII	CCWGG	2 cut(s)	1206, 1720
EcoT14I	CCWWGG	2 cut(s)	1095, 1290
EcoT22I	ATGCAT	1 cut(s)	186
EcoT38I	GRGCYC	3 cut(s)	1491, 1523, 1770
ErhI	CCWWGG	2 cut(s)	1095, 1290
FalI	AAGNNNNNCTT	2 cut(s)	846, 878
FaqI	GGGAC	2 cut(s)	1187, 1713
FbaI	TGATCA	2 cut(s)	514, 1170
FblI	GTMKAC	1 cut(s)	1185
Fnu4HI	GCNGC	9 cut(s)	204, 435, 468, 477, 783, 915, 1370, 1373, 1575
FokI	GGATG	5 cut(s)	248, 657, 1136, 1367, 1675
FriOI	GRGCYC	3 cut(s)	1491, 1523, 1770
Fsp4HI	GCNGC	9 cut(s)	204, 435, 468, 477, 783, 915, 1370, 1373, 1575
FspBI	CTAG	5 cut(s)	332, 581, 747, 1007, 1271
GlaI	GCGC	1 cut(s)	1256
GluI	GCNGC	9 cut(s)	204, 435, 468, 477, 783, 915, 1370, 1373, 1575
GsaI	CCCAGC	1 cut(s)	1611
HaeIII	GGCC	6 cut(s)	260, 1089, 1211, 1269, 1720, 1739
HapII	CCGG	4 cut(s)	228, 471, 1224, 1236
HgaI	GACGC	1 cut(s)	1252
HhaI	GCGC	1 cut(s)	1257
Hin1I	GRCGYC	1 cut(s)	1263
Hin6I	GCGC	1 cut(s)	1255
HinP1I	GCGC	1 cut(s)	1255
HindIII	AAGCTT	1 cut(s)	855
HinfI	GANTC	9 cut(s)	288, 483, 947, 975, 1045, 1194, 1239, 1305, 1726
HpaII	CCGG	4 cut(s)	228, 471, 1224, 1236
HphI	GGTGA	8 cut(s)	163, 190, 796, 970, 1084, 1102, 1234, 1432
Hpy166II	GTNNAC	3 cut(s)	154, 1186, 1440
Hpy188I	TCNGA	5 cut(s)	199, 303, 826, 1424, 1474
Hpy188III	TCNNGA	8 cut(s)	708, 812, 1168, 1236, 1318, 1457, 1501, 1672
Hpy8I	GTNNAC	3 cut(s)	154, 1186, 1440
Hpy99I	CGWCG	3 cut(s)	698, 1268, 1451
HpyAV	CCTTC	8 cut(s)	10, 26, 43, 48, 286, 308, 818, 831
HpyCH4III	ACNGT	2 cut(s)	346, 1552
HpyCH4IV	ACGT	2 cut(s)	1329, 1446
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 266, 473, 476, 1378
HpyF3I	CTNAG	2 cut(s)	813, 1059
HpySE526I	ACGT	2 cut(s)	1329, 1446
Hsp92I	GRCGYC	1 cut(s)	1263
HspAI	GCGC	1 cut(s)	1255
Kpn2I	TCCGGA	1 cut(s)	1235
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
Ksp22I	TGATCA	2 cut(s)	514, 1170
Kzo9I	GATC	7 cut(s)	394, 514, 532, 826, 837, 1170, 1497
LmnI	GCTCC	5 cut(s)	473, 627, 1068, 1518, 1587
Lsp1109I	GCAGC	8 cut(s)	421, 463, 479, 794, 926, 1356, 1384, 1561
LweI	GCATC	4 cut(s)	171, 190, 1116, 1345
MaeI	CTAG	5 cut(s)	332, 581, 747, 1007, 1271
MaeII	ACGT	2 cut(s)	1329, 1446
MaeIII	GTNAC	3 cut(s)	160, 418, 976
MalI	GATC	7 cut(s)	396, 516, 534, 828, 839, 1172, 1499
MboI	GATC	7 cut(s)	394, 514, 532, 826, 837, 1170, 1497
MflI	RGATCY	2 cut(s)	532, 826
MhlI	GDGCHC	4 cut(s)	1020, 1491, 1523, 1770
MlsI	TGGCCA	2 cut(s)	260, 1211
MluCI	AATT	7 cut(s)	518, 618, 762, 872, 918, 1217, 1425
MluNI	TGGCCA	2 cut(s)	260, 1211
MlyI	GAGTC	4 cut(s)	492, 984, 1039, 1735
MmeI	TCCRAC	2 cut(s)	422, 1105
Mox20I	TGGCCA	2 cut(s)	260, 1211
Mph1103I	ATGCAT	1 cut(s)	186
MroI	TCCGGA	1 cut(s)	1235
MroNI	GCCGGC	1 cut(s)	227
MroXI	GAANNNNTTC	2 cut(s)	1640, 1679
MscI	TGGCCA	2 cut(s)	260, 1211
MseI	TTAA	2 cut(s)	921, 1560
MslI	CAYNNNNRTG	3 cut(s)	75, 254, 1295
Msp20I	TGGCCA	2 cut(s)	260, 1211
MspA1I	CMGCKG	2 cut(s)	62, 785
MspI	CCGG	4 cut(s)	228, 471, 1224, 1236
MspR9I	CCNGG	2 cut(s)	1208, 1722
Mva1269I	GAATGC	2 cut(s)	1227, 1576
MvaI	CCWGG	2 cut(s)	1208, 1722
MwoI	GCNNNNNNNGC	5 cut(s)	140, 266, 473, 476, 1378
NaeI	GCCGGC	1 cut(s)	229
NcoI	CCATGG	2 cut(s)	1095, 1290
NdeII	GATC	7 cut(s)	394, 514, 532, 826, 837, 1170, 1497
NgoMIV	GCCGGC	1 cut(s)	227
NlaIV	GGNNCC	5 cut(s)	629, 965, 1017, 1479, 1628
NmuCI	GTSAC	1 cut(s)	976
NsiI	ATGCAT	1 cut(s)	186
NspI	RCATGY	3 cut(s)	463, 1351, 1438
NspV	TTCGAA	1 cut(s)	522
PaeR7I	CTCGAG	1 cut(s)	1457
PceI	AGGCCT	1 cut(s)	1089
PciI	ACATGT	2 cut(s)	459, 1434
PcsI	WCGNNNNNNNCGW	1 cut(s)	1455
PctI	GAATGC	2 cut(s)	1227, 1576
PdiI	GCCGGC	1 cut(s)	229
PdmI	GAANNNNTTC	2 cut(s)	1640, 1679
PfeI	GAWTC	5 cut(s)	288, 947, 1194, 1239, 1305
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	9 cut(s)	205, 436, 469, 478, 784, 916, 1371, 1374, 1576
PleI	GAGTC	4 cut(s)	491, 983, 1039, 1734
PpsI	GAGTC	4 cut(s)	491, 983, 1039, 1734
PscI	ACATGT	2 cut(s)	459, 1434
Psp124BI	GAGCTC	2 cut(s)	1523, 1770
Psp6I	CCWGG	2 cut(s)	1206, 1720
PspFI	CCCAGC	1 cut(s)	1607
PspGI	CCWGG	2 cut(s)	1206, 1720
PspN4I	GGNNCC	5 cut(s)	629, 965, 1017, 1479, 1628
PspPI	GGNCC	1 cut(s)	787
PstI	CTGCAG	2 cut(s)	481, 1374
PstNI	CAGNNNCTG	1 cut(s)	1378
PsuI	RGATCY	2 cut(s)	532, 826
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	5 cut(s)	722, 1390, 1412, 1538, 1709
RsaNI	GTAC	5 cut(s)	721, 1389, 1411, 1537, 1708
RseI	CAYNNNNRTG	3 cut(s)	75, 254, 1295
Rsr2I	CGGWCCG	1 cut(s)	787
RsrII	CGGWCCG	1 cut(s)	787
SacI	GAGCTC	2 cut(s)	1523, 1770
SaqAI	TTAA	2 cut(s)	921, 1560
SatI	GCNGC	9 cut(s)	204, 435, 468, 477, 783, 915, 1370, 1373, 1575
Sau3AI	GATC	7 cut(s)	394, 514, 532, 826, 837, 1170, 1497
Sau96I	GGNCC	1 cut(s)	787
ScaI	AGTACT	1 cut(s)	1412
SchI	GAGTC	4 cut(s)	492, 984, 1039, 1735
ScrFI	CCNGG	2 cut(s)	1208, 1722
SduI	GDGCHC	4 cut(s)	1020, 1491, 1523, 1770
SfaNI	GCATC	4 cut(s)	171, 190, 1116, 1345
SfcI	CTRYAG	3 cut(s)	477, 1250, 1370
Sfr274I	CTCGAG	1 cut(s)	1457
SfuI	TTCGAA	1 cut(s)	522
SinI	GGWCC	1 cut(s)	787
SlaI	CTCGAG	1 cut(s)	1457
SmiMI	CAYNNNNRTG	3 cut(s)	75, 254, 1295
SmlI	CTYRAG	2 cut(s)	1457, 1490
SmoI	CTYRAG	2 cut(s)	1457, 1490
SpeI	ACTAGT	1 cut(s)	746
Sse9I	AATT	7 cut(s)	518, 618, 762, 872, 918, 1217, 1425
SseBI	AGGCCT	1 cut(s)	1089
SsiI	CCGC	4 cut(s)	149, 204, 785, 790
SspI	AATATT	1 cut(s)	1564
SspMI	CTAG	5 cut(s)	332, 581, 747, 1007, 1271
SstI	GAGCTC	2 cut(s)	1523, 1770
StuI	AGGCCT	1 cut(s)	1089
StyD4I	CCNGG	2 cut(s)	1206, 1720
StyI	CCWWGG	2 cut(s)	1095, 1290
TaaI	ACNGT	2 cut(s)	346, 1552
TaiI	ACGT	2 cut(s)	1332, 1449
TaqI	TCGA	9 cut(s)	318, 522, 557, 739, 759, 840, 1458, 1496, 1502
TaqII	GACCGA	1 cut(s)	1439
TasI	AATT	7 cut(s)	518, 618, 762, 872, 918, 1217, 1425
TatI	WGTACW	2 cut(s)	1388, 1410
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	5 cut(s)	288, 947, 1194, 1239, 1305
Tru1I	TTAA	2 cut(s)	921, 1560
Tru9I	TTAA	2 cut(s)	921, 1560
TscAI	CASTG	4 cut(s)	238, 1371, 1383, 1557
TseFI	GTSAC	1 cut(s)	976
TseI	GCWGC	8 cut(s)	434, 467, 476, 782, 914, 1369, 1372, 1574
Tsp45I	GTSAC	1 cut(s)	976
TspDTI	ATGAA	3 cut(s)	436, 1405, 1672
TspRI	CASTG	4 cut(s)	238, 1371, 1383, 1557
Van91I	CCANNNNNTGG	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	787
XapI	RAATTY	2 cut(s)	872, 1217
XceI	RCATGY	3 cut(s)	463, 1351, 1438
XhoI	CTCGAG	1 cut(s)	1457
XmiI	GTMKAC	1 cut(s)	1185
XmnI	GAANNNNTTC	2 cut(s)	1640, 1679
XspI	CTAG	5 cut(s)	332, 581, 747, 1007, 1271
ZrmI	AGTACT	1 cut(s)	1412
Zsp2I	ATGCAT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.