Prupe.3G094600_v2.0.a1

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
7085566 .. 7094401
8836 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G094600.1

Sequence Viewer

Length: 1356 bp
ATGCTTTCTCTCCACCTTCTCAAACCCCCAATATTCGCCGGAGCGCGAAGCACTCTCGCCCGGGCCAATGCGGCCACTCCACGTGCGTGCCTTAGCGTGGACGTGCGCACGGTCGATCAATCGAAGCCAGGGGTGGCGGTGGGGAGCCAGGAGGTGATGGAGGCGGAGGGGAGGGTTCTGGTGGGGACGTACAAAAGGCCGCCCGTGGTGTTGTACAGTGGCAAAGGATGTAAATTGTACGATCCTGAAGGGCGAGAGTATTTGGATTTGTATTCTGGGATTGCAGTGAACGCTCTTGGACACGGGGATCCTGATTGGATACGGGCTGTCACAGAGCAAGCCCGTACGCTCACCCACGTCAGCAACGCCTACTATTCCATCCCTCAGGTGGAGCTAGCAAAACGTTTGGTGGCTTGCTCCTTTGCTGATCGTGTCTTTTTCTCCAACTCTGGCACAGAAGCAAATGAAGCTGCCATAAAATTTGCAAGAAAGTTTCAAAGATTCTCATTTCCTGAAAAGAAAGAGCCTGCAACAGAATTCATTTCTTTCACCAACAGCTTCCATGGGAGAACGATGGGGGCCGTTGCTTTGACGAGTAAGGAGCATTATCGGTCGCCATTTGAGCCTGTCATGCCTGGAGTTACTTTCTTGGAGTATGGCGATATACAAGCTGCAACAAAACTAATTCATTCTGGCAAAATTGCTGCTGTGTTTCTTGAACCTCTCCAGGGCGAAGGTGGCATACTTAGCGCAACTAAAGAATTCTTGCAATCCTTGCGTGGTGCTTGTGATGATTCGGGGTCGCTACTGGTCTTTGATGAGGTTCAATGCGGCTTAGGCCGAACTGGTTATCTCTGGGCACATGAAGCTTATGGTGTATTCCCAGACATAATGACGCTGGCCAAGCCTCTTGCAGGAGGCCTCCCCATAGGAGCTGTTTTAGTTACAGAAAAAGTCGCTGCTTCAATAAAATATGGAGAACATGGAAGCACATTTGCTGGAGGGCCGCTTATATGCAATGCCGCCCTTTCTGTTTTGAACAAAATCTCAAAGACCGAGTTTCTATCCGGCGTCTCGAACAAAGGTCAGTACTTCAAAGAATTGTTAACAAAGAAGCTGGGAAAAAATCCACACGTGAGAGAAGTACGTGGTTCAGGACTTATCGTTGGTGTAGAGCTAGATGTTTCTGCTTCACCACTCGTCGATGCCTGTCGAAATTTGGGTCTTCTAATAATAACAGCAGGAAAAGGAAATGTTCTCAGGCTTGTGCCCCCTTTGATTATCTCTAAGCAAGAATTGGAGTATGCAGCTGAGGTATTGCTTGAATGTTTGCCGGTCCTTGATGGCTCTAATTGA

Protein Analysis

452

Amino Acids

48.43

Weight (kDa)

8.02

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 107
AccII CGCG 1 cut(s) 46
AciI CCGC 7 cut(s) 71, 137, 164, 200, 831, 1007, 1023
AclI AACGTT 1 cut(s) 403
AclWI GGATC 3 cut(s) 236, 302, 315
AcoI YGGCCR 2 cut(s) 72, 900
AcsI RAATTY 4 cut(s) 479, 536, 761, 1216
AcuI CTGAAG 1 cut(s) 267
AcvI CACGTG 2 cut(s) 83, 1135
AcyI GRCGYC 1 cut(s) 1071
AfaI GTAC 6 cut(s) 191, 215, 239, 346, 1091, 1146
AfiI CCNNNNNNNGG 4 cut(s) 97, 388, 728, 914
AflIII ACRYGT 1 cut(s) 1132
AgsI TTSAA 7 cut(s) 497, 719, 827, 966, 1039, 1096, 1325
AjiI CACGTC 2 cut(s) 103, 358
AjnI CCWGG 4 cut(s) 127, 147, 634, 726
AleI CACNNNNGTG 1 cut(s) 85
AluBI AGCT 9 cut(s) 394, 470, 558, 671, 869, 935, 1117, 1177, 1310
AluI AGCT 9 cut(s) 394, 470, 558, 671, 869, 935, 1117, 1177, 1310
Alw26I GTCTC 1 cut(s) 1078
AlwI GGATC 3 cut(s) 236, 302, 315
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 8 cut(s) 63, 72, 197, 579, 838, 900, 919, 1004
ApeKI GCWGC 5 cut(s) 470, 671, 704, 959, 1307
ApoI RAATTY 4 cut(s) 479, 536, 761, 1216
ArsI GACNNNNNNTTYG 2 cut(s) 1207, 1239
AspLEI GCGC 3 cut(s) 46, 108, 752
AspS9I GGNCC 4 cut(s) 63, 579, 1004, 1336
AsuC2I CCSGG 2 cut(s) 61, 62
AsuHPI GGTGA 4 cut(s) 166, 343, 541, 1185
AsuNHI GCTAGC 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 1 cut(s) 1336
AxyI CCTNAGG 1 cut(s) 384
BaeGI GKGCMC 2 cut(s) 862, 1272
BalI TGGCCA 1 cut(s) 902
BamHI GGATCC 1 cut(s) 307
BarI GAAGNNNNNNTAC 2 cut(s) 726, 758
BbrPI CACGTG 2 cut(s) 83, 1135
BbsI GAAGAC 1 cut(s) 1217
BbvCI CCTCAGC 1 cut(s) 1311
BbvI GCAGC 5 cut(s) 457, 658, 691, 946, 1319
BccI CCATC 4 cut(s) 151, 386, 568, 1337
BceAI ACGGC 1 cut(s) 566
BciT130I CCWGG 4 cut(s) 129, 149, 636, 728
BciVI GTATCC 1 cut(s) 312
BcnI CCSGG 2 cut(s) 61, 62
BcoDI GTCTC 1 cut(s) 1078
BfaI CTAG 2 cut(s) 395, 1178
BfuI GTATCC 1 cut(s) 312
BglI GCCNNNNNGGC 1 cut(s) 71
BmcAI AGTACT 1 cut(s) 1091
Bme1390I CCNGG 6 cut(s) 61, 62, 129, 149, 636, 728
Bme18I GGWCC 1 cut(s) 1336
BmeT110I CYCGRG 1 cut(s) 60
BmgBI CACGTC 2 cut(s) 103, 358
BmgT120I GGNCC 4 cut(s) 63, 579, 1004, 1336
BmiI GGNNCC 3 cut(s) 146, 309, 580
BmrFI CCNGG 6 cut(s) 61, 62, 129, 149, 636, 728
BmsI GCATC 1 cut(s) 1195
BmtI GCTAGC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 1217
BpmI CTGGAG 3 cut(s) 657, 710, 1020
Bpu10I CCTNAGC 3 cut(s) 92, 835, 1311
BpuMI CCSGG 2 cut(s) 61, 62
BsaAI YACGTR 3 cut(s) 83, 1135, 1148
BsaHI GRCGYC 1 cut(s) 1071
BsaJI CCNNGG 5 cut(s) 60, 128, 204, 562, 727
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 388, 728, 914
Bse118I RCCGGY 1 cut(s) 1333
Bse1I ACTGG 2 cut(s) 813, 850
Bse21I CCTNAGG 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 1024
BseBI CCWGG 4 cut(s) 129, 149, 636, 728
BseDI CCNNGG 5 cut(s) 60, 128, 204, 562, 727
BseGI GGATG 2 cut(s) 233, 378
BseLI CCNNNNNNNGG 4 cut(s) 97, 388, 728, 914
BseMI GCAATG 1 cut(s) 1024
BseMII CTCAG 3 cut(s) 398, 1273, 1302
BseNI ACTGG 2 cut(s) 813, 850
BseSI GKGCMC 2 cut(s) 862, 1272
BseXI GCAGC 5 cut(s) 457, 658, 691, 946, 1319
BseYI CCCAGC 1 cut(s) 1117
Bsh1236I CGCG 1 cut(s) 46
Bsh1285I CGRYCG 2 cut(s) 114, 614
BshFI GGCC 8 cut(s) 65, 74, 199, 581, 840, 902, 921, 1006
BsiEI CGRYCG 2 cut(s) 114, 614
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 4 cut(s) 39, 61, 1068, 1334
BsiWI CGTACG 1 cut(s) 344
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 4 cut(s) 97, 388, 728, 914
BsmAI GTCTC 1 cut(s) 1078
BsmBI CGTCTC 1 cut(s) 1078
BsmFI GGGAC 1 cut(s) 199
BsnI GGCC 8 cut(s) 65, 74, 199, 581, 840, 902, 921, 1006
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 862, 1272
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 4 cut(s) 115, 241, 307, 427
Bsp19I CCATGG 1 cut(s) 562
BspACI CCGC 7 cut(s) 71, 137, 164, 200, 831, 1007, 1023
BspANI GGCC 8 cut(s) 65, 74, 199, 581, 840, 902, 921, 1006
BspCNI CTCAG 3 cut(s) 397, 1272, 1303
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 3 cut(s) 146, 309, 580
BspOI GCTAGC 1 cut(s) 398
BspPI GGATC 3 cut(s) 236, 302, 315
BsrDI GCAATG 1 cut(s) 1024
BsrFI RCCGGY 1 cut(s) 1333
BsrGI TGTACA 1 cut(s) 213
BsrI ACTGG 2 cut(s) 813, 850
BssAI RCCGGY 1 cut(s) 1333
BssECI CCNNGG 5 cut(s) 60, 128, 204, 562, 727
BssMI GATC 4 cut(s) 115, 241, 307, 427
BssNI GRCGYC 1 cut(s) 1071
BssT1I CCWWGG 1 cut(s) 562
Bst2UI CCWGG 4 cut(s) 129, 149, 636, 728
Bst4CI ACNGT 2 cut(s) 112, 218
BstACI GRCGYC 1 cut(s) 1071
BstAPI GCANNNNNTGC 1 cut(s) 775
BstAUI TGTACA 1 cut(s) 213
BstBAI YACGTR 3 cut(s) 83, 1135, 1148
BstC8I GCNNGC 6 cut(s) 88, 339, 396, 415, 528, 900
BstDEI CTNAG 7 cut(s) 92, 384, 746, 835, 1259, 1287, 1311
BstDSI CCRYGG 2 cut(s) 204, 562
BstENI CCTNNNNNAGG 1 cut(s) 912
BstF5I GGATG 2 cut(s) 233, 378
BstFNI CGCG 1 cut(s) 46
BstHHI GCGC 3 cut(s) 46, 108, 752
BstKTI GATC 4 cut(s) 118, 244, 310, 430
BstMAI GTCTC 1 cut(s) 1078
BstMBI GATC 4 cut(s) 115, 241, 307, 427
BstMCI CGRYCG 2 cut(s) 114, 614
BstNI CCWGG 4 cut(s) 129, 149, 636, 728
BstSCI CCNGG 6 cut(s) 59, 60, 127, 147, 634, 726
BstSLI GKGCMC 2 cut(s) 862, 1272
BstUI CGCG 1 cut(s) 46
BstV1I GCAGC 5 cut(s) 457, 658, 691, 946, 1319
BstV2I GAAGAC 1 cut(s) 1217
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
Bsu36I CCTNAGG 1 cut(s) 384
BsuI GTATCC 1 cut(s) 312
BsuRI GGCC 8 cut(s) 65, 74, 199, 581, 840, 902, 921, 1006
BtgI CCRYGG 2 cut(s) 204, 562
BtrI CACGTC 2 cut(s) 103, 358
BtsCI GGATG 2 cut(s) 233, 378
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 2 cut(s) 223, 291
Cac8I GCNNGC 6 cut(s) 88, 339, 396, 415, 528, 900
CfoI GCGC 3 cut(s) 46, 108, 752
Cfr10I RCCGGY 1 cut(s) 1333
Cfr13I GGNCC 4 cut(s) 63, 579, 1004, 1336
Cfr9I CCCGGG 1 cut(s) 60
CseI GACGC 2 cut(s) 904, 1060
Csp6I GTAC 6 cut(s) 190, 214, 238, 345, 1090, 1145
CviAII CATG 4 cut(s) 563, 631, 863, 983
CviQI GTAC 6 cut(s) 190, 214, 238, 345, 1090, 1145
DdeI CTNAG 7 cut(s) 92, 384, 746, 835, 1259, 1287, 1311
DpnI GATC 4 cut(s) 117, 243, 309, 429
DpnII GATC 4 cut(s) 115, 241, 307, 427
EaeI YGGCCR 2 cut(s) 72, 900
EciI GGCGGA 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 562
Eco147I AGGCCT 1 cut(s) 921
Eco47I GGWCC 1 cut(s) 1336
Eco57I CTGAAG 1 cut(s) 267
Eco72I CACGTG 2 cut(s) 83, 1135
Eco81I CCTNAGG 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 60
EcoNI CCTNNNNNAGG 1 cut(s) 912
EcoRI GAATTC 2 cut(s) 536, 761
EcoRII CCWGG 4 cut(s) 127, 147, 634, 726
EcoT14I CCWWGG 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 562
Esp3I CGTCTC 1 cut(s) 1078
FaeI CATG 4 cut(s) 566, 634, 866, 986
FaqI GGGAC 1 cut(s) 199
FatI CATG 4 cut(s) 562, 630, 862, 982
FokI GGATG 2 cut(s) 240, 365
FspAI RTGCGCAY 1 cut(s) 107
FspBI CTAG 2 cut(s) 395, 1178
FspI TGCGCA 1 cut(s) 107
GlaI GCGC 3 cut(s) 45, 107, 751
GsaI CCCAGC 1 cut(s) 1121
GsuI CTGGAG 3 cut(s) 657, 710, 1020
HaeIII GGCC 8 cut(s) 65, 74, 199, 581, 840, 902, 921, 1006
HapII CCGG 4 cut(s) 39, 61, 1068, 1334
HgaI GACGC 2 cut(s) 904, 1060
HhaI GCGC 3 cut(s) 46, 108, 752
Hin1I GRCGYC 1 cut(s) 1071
Hin1II CATG 4 cut(s) 566, 634, 866, 986
Hin6I GCGC 3 cut(s) 44, 106, 750
HinP1I GCGC 3 cut(s) 44, 106, 750
HincII GTYRAC 1 cut(s) 1107
HindII GTYRAC 1 cut(s) 1107
HindIII AAGCTT 1 cut(s) 867
HinfI GANTC 2 cut(s) 501, 794
HpaI GTTAAC 1 cut(s) 1107
HpaII CCGG 4 cut(s) 39, 61, 1068, 1334
HphI GGTGA 4 cut(s) 166, 343, 541, 1185
Hpy166II GTNNAC 3 cut(s) 100, 289, 1107
Hpy188III TCNNGA 6 cut(s) 245, 311, 512, 716, 1075, 1155
Hpy8I GTNNAC 3 cut(s) 100, 289, 1107
Hpy99I CGWCG 1 cut(s) 1205
HpyAV CCTTC 3 cut(s) 26, 242, 728
HpyCH4III ACNGT 2 cut(s) 112, 218
HpyCH4IV ACGT 7 cut(s) 82, 102, 188, 357, 403, 1134, 1147
HpyCH4V TGCA 8 cut(s) 284, 485, 530, 674, 769, 914, 1017, 1307
HpyF3I CTNAG 7 cut(s) 92, 384, 746, 835, 1259, 1287, 1311
HpySE526I ACGT 7 cut(s) 82, 102, 188, 357, 403, 1134, 1147
Hsp92I GRCGYC 1 cut(s) 1071
Hsp92II CATG 4 cut(s) 566, 634, 866, 986
HspAI GCGC 3 cut(s) 44, 106, 750
KspAI GTTAAC 1 cut(s) 1107
Kzo9I GATC 4 cut(s) 115, 241, 307, 427
LmnI GCTCC 6 cut(s) 41, 144, 391, 422, 601, 932
Lsp1109I GCAGC 5 cut(s) 457, 658, 691, 946, 1319
LweI GCATC 1 cut(s) 1195
MaeI CTAG 2 cut(s) 395, 1178
MaeII ACGT 7 cut(s) 82, 102, 188, 357, 403, 1134, 1147
MaeIII GTNAC 3 cut(s) 328, 640, 943
MalI GATC 4 cut(s) 117, 243, 309, 429
MboI GATC 4 cut(s) 115, 241, 307, 427
MboII GAAGA 1 cut(s) 1217
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 2 cut(s) 862, 1272
MlsI TGGCCA 1 cut(s) 902
MluNI TGGCCA 1 cut(s) 902
MmeI TCCRAC 1 cut(s) 468
Mox20I TGGCCA 1 cut(s) 902
MscI TGGCCA 1 cut(s) 902
MseI TTAA 1 cut(s) 1106
MslI CAYNNNNRTG 1 cut(s) 85
Msp20I TGGCCA 1 cut(s) 902
MspA1I CMGCKG 1 cut(s) 1310
MspI CCGG 4 cut(s) 39, 61, 1068, 1334
MspR9I CCNGG 6 cut(s) 61, 62, 129, 149, 636, 728
MvaI CCWGG 4 cut(s) 129, 149, 636, 728
MvnI CGCG 1 cut(s) 46
NciI CCSGG 2 cut(s) 61, 62
NcoI CCATGG 1 cut(s) 562
NdeII GATC 4 cut(s) 115, 241, 307, 427
NheI GCTAGC 1 cut(s) 394
NlaIII CATG 4 cut(s) 566, 634, 866, 986
NlaIV GGNNCC 3 cut(s) 146, 309, 580
NmuCI GTSAC 1 cut(s) 328
NsbI TGCGCA 1 cut(s) 107
OliI CACNNNNGTG 1 cut(s) 85
PceI AGGCCT 1 cut(s) 921
PfeI GAWTC 2 cut(s) 501, 794
Pfl23II CGTACG 1 cut(s) 344
PmaCI CACGTG 2 cut(s) 83, 1135
PmlI CACGTG 2 cut(s) 83, 1135
Ppu21I YACGTR 3 cut(s) 83, 1135, 1148
Psp1406I AACGTT 1 cut(s) 403
Psp6I CCWGG 4 cut(s) 127, 147, 634, 726
PspCI CACGTG 2 cut(s) 83, 1135
PspFI CCCAGC 1 cut(s) 1117
PspGI CCWGG 4 cut(s) 127, 147, 634, 726
PspLI CGTACG 1 cut(s) 344
PspN4I GGNNCC 3 cut(s) 146, 309, 580
PspPI GGNCC 4 cut(s) 63, 579, 1004, 1336
PsuI RGATCY 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 1310
RsaI GTAC 6 cut(s) 191, 215, 239, 346, 1091, 1146
RsaNI GTAC 6 cut(s) 190, 214, 238, 345, 1090, 1145
RseI CAYNNNNRTG 1 cut(s) 85
SaqAI TTAA 1 cut(s) 1106
Sau3AI GATC 4 cut(s) 115, 241, 307, 427
Sau96I GGNCC 4 cut(s) 63, 579, 1004, 1336
ScaI AGTACT 1 cut(s) 1091
ScrFI CCNGG 6 cut(s) 61, 62, 129, 149, 636, 728
SduI GDGCHC 2 cut(s) 862, 1272
SfaNI GCATC 1 cut(s) 1195
SfiI GGCCNNNNNGGCC 1 cut(s) 71
SinI GGWCC 1 cut(s) 1336
SmaI CCCGGG 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 85
SrfI GCCCGGGC 1 cut(s) 62
SseBI AGGCCT 1 cut(s) 921
SsiI CCGC 7 cut(s) 71, 137, 164, 200, 831, 1007, 1023
SspI AATATT 1 cut(s) 33
SspMI CTAG 2 cut(s) 395, 1178
StuI AGGCCT 1 cut(s) 921
StyD4I CCNGG 6 cut(s) 59, 60, 127, 147, 634, 726
StyI CCWWGG 1 cut(s) 562
TaaI ACNGT 2 cut(s) 112, 218
TaiI ACGT 7 cut(s) 85, 105, 191, 360, 406, 1137, 1150
TaqI TCGA 5 cut(s) 114, 122, 1076, 1203, 1213
TaqII GACCGA 2 cut(s) 600, 1070
TatI WGTACW 2 cut(s) 213, 1089
TauI GCSGC 5 cut(s) 74, 202, 834, 1009, 1025
TfiI GAWTC 2 cut(s) 501, 794
Tru1I TTAA 1 cut(s) 1106
Tru9I TTAA 1 cut(s) 1106
TscAI CASTG 2 cut(s) 223, 291
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 5 cut(s) 470, 671, 704, 959, 1307
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 4 cut(s) 480, 529, 677, 879
TspMI CCCGGG 1 cut(s) 60
TspRI CASTG 2 cut(s) 223, 291
VpaK11BI GGWCC 1 cut(s) 1336
XagI CCTNNNNNAGG 1 cut(s) 912
XapI RAATTY 4 cut(s) 479, 536, 761, 1216
XcmI CCANNNNNNNNNTGG 2 cut(s) 385, 734
XmaI CCCGGG 1 cut(s) 60
XspI CTAG 2 cut(s) 395, 1178
ZrmI AGTACT 1 cut(s) 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.