Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004431

Physical Location & Seq

Genomic Coordinates Reverse (-)

56335043 .. 56338630

Gene Structure 3588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG388900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGATGACTTCTCTCCAGCTCCTGAACCCCCCAGTTTTAGCGGGAAAACGAAGCCCCCGCGTATGGACCACTGGGGTGACGCCACGTGGGTGTCTTAACGTGGACGTGCGAGCACGGGATCAAAAGGTGCCGGCGGCGGTGGGGAGCCAGGAGGTGATGGAGGCGGAGAAGAGGGTTATGGTGGGGACGTACAATAGACCACCGGTGGTGATCGCCAGTGGCAAAGGATGTAAATTGTACGATCCTGAAGGGCGAGAGTATTTGGACTTGATGTCTGGGATTGCTGTCAATGCGCTTGGACATGGGGATCCGGATTGGATACGGGCCGTTACAGAGCAAGCCCATGTGCTCACCCATGTCAGCAATGTCTATTTTTCCATTCCCCAGGTGGAGCTGGCAAAACGGCTGGTGGCTTGCTCCTTTGCTGACCGTGTCTTTTTCTCAAACTCGGGAACTGAAGCAAATGAAGCTGCCATAAAATTTGCAAGAAAGTTCCAAAGATTTTCAAACCCTGTGAAGAAAGAGCCTACAACAGAATTCATTTCTTTCACTAACAGCTTCCATGGGAGGACGATGGGGTCCGTGGCTTTGACTAGTAAAGAGCATTACCGATCACCATTTGAGCCTCTCATGCCTGGAGTCACTTTCTTAGATTATGGAAATGTACAAGCTGCAAGAAAGCTAATTAAATCTGGCAAAATCGCTGCTGTGTTTGTTGAACCTATCCAGGGTGAAGGTGGGATAAATAGTGCAACTAAAGAATTTTTGCAATCCTTGCGTGGTGCTTGTGATGATTCAGGTTCTCTTCTGGTCTTTGATGAGGTTCAATGTGGGTTGGGTCGAACTGGTTATCTCTGGGCGCATGAAGCTTATGGTGTATTCCCAGATATAATGACTCTGGCCAAGCCTCTTGCAGGAGGACTTCCCATAGGAGCTGTATTAGTGACTGAAAGGGTTGCTGCTTCAATGAAGTATGGAGAGCATGGAAGCACTTTTGCTGGGGGGCCCCTTATCTGCAATGCTGCCCTTGCGGTCTTGGACAAAATTTCCAAGCCTGAGTTTCTCAAAAGCGTCTCAGAGAAAGGTCAGTACTTCAAAGAAGTGCTGACAAAGAAGCTGGATACAAATCCACATGTGAGAGAAGTACGGGGTTTGGGTCTCATTGTTGGAGTAGAGCTGGACGTGTCTGCTTCACCGCTTGTCGATGCCTGTAGGAATTCTGGTCTTCTGATAATAACAGCCGGAAAAGGAAATGTCCTCAGGCTTGTGCCGCCGTTGATCATCTCTAAGCCAGAATTGGAGCATGCAGCTGAGATTTTGCTTGAATGTTTGCCTGCCCTTGATGGCTCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003992 GO:0005488 GO:0005507 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0019752 GO:0019842 GO:0022622 GO:0030170 GO:0032501 GO:0032502 GO:0036094 GO:0042742 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044419 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046872 GO:0046914 GO:0048037 GO:0048364 GO:0048731 GO:0048856 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0070279 GO:0071704 GO:0080022 GO:0097159 GO:0098542 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

451

Amino Acids

48.62

Weight (kDa)

8.31

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_3	PF00202	66 - 444	2.8e-116	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80600
fragaria_vesca	FvH4_3g15500 FvH4_3g15500 FvH4_6g29020
malus_domestica	MD05G1222800.v1.1 MD05G1223000.v1.1 MD10G1204400.v1.1 MD17G1219100.v1.1
prunus_persica	Prupe.3G094600_v2.0.a1 Prupe.4G137500_v2.0.a1
pyrus_communis	pycom05g20540
rosa_chinensis	RchiOBHm_Chr2g0133691 RchiOBHm_Chr5g0026121
rosa_laevigata	RLG00000019356 RLG00000032903
rosa_multiflora	Rmu_sc0000924.1_g000010 Rmu_sc0002806.1_g000006 Rmu_sc0002909.1_g000021 Rmu_sc0007285.1_g000005
rosa_roxburghii	Rroxscaffold_1G00053190 Rroxscaffold_2G00110900
rosa_rugosa	Rorug02G0313000 Rorug05G0090700
rosa_samantha	Rh2AG366400 Rh2BG372000 Rh2CG349500 Rh2DG388900 Rh5CG199400 Rh5DG182000
rosa_wichuraiana	Rw0G015720 Rw2G029810 Rw5G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	127
AccII	CGCG	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	310
AciI	CCGC	8 cut(s)	41, 58, 134, 137, 164, 1031, 1196, 1271
AclWI	GGATC	4 cut(s)	126, 236, 302, 315
AcoI	YGGCCR	1 cut(s)	900
AcsI	RAATTY	5 cut(s)	479, 536, 761, 1044, 1216
AcuI	CTGAAG	2 cut(s)	267, 477
AcvI	CACGTG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	5 cut(s)	191, 239, 666, 1091, 1146
AfiI	CCNNNNNNNGG	3 cut(s)	63, 728, 914
AflIII	ACRYGT	2 cut(s)	1132, 1182
AgeI	ACCGGT	1 cut(s)	202
AgsI	TTSAA	6 cut(s)	507, 719, 827, 966, 1096, 1325
AhdI	GACNNNNNGTC	1 cut(s)	271
AhlI	ACTAGT	1 cut(s)	593
AjiI	CACGTC	2 cut(s)	106, 1183
AjnI	CCWGG	4 cut(s)	147, 384, 634, 726
AleI	CACNNNNGTG	2 cut(s)	74, 88
Alw21I	GWGCWC	2 cut(s)	115, 351
Alw26I	GTCTC	2 cut(s)	1078, 1163
AlwI	GGATC	4 cut(s)	126, 236, 302, 315
AlwNI	CAGNNNCTG	1 cut(s)	22
Ama87I	CYCGRG	1 cut(s)	448
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	3 cut(s)	324, 900, 1004
ApaI	GGGCCC	1 cut(s)	1008
ApeKI	GCWGC	6 cut(s)	470, 671, 704, 959, 1022, 1307
ApoI	RAATTY	5 cut(s)	479, 536, 761, 1044, 1216
AsiGI	ACCGGT	1 cut(s)	202
AspLEI	GCGC	2 cut(s)	295, 862
AspS9I	GGNCC	5 cut(s)	66, 324, 579, 1004, 1005
AsuHPI	GGTGA	7 cut(s)	88, 166, 220, 343, 606, 743, 1185
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	2 cut(s)	66, 579
AxyI	CCTNAGG	1 cut(s)	1259
BaeGI	GKGCMC	1 cut(s)	1008
BalI	TGGCCA	1 cut(s)	902
BamHI	GGATCC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	1008
BbrPI	CACGTG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	1217
Bbv12I	GWGCWC	2 cut(s)	115, 351
BbvI	GCAGC	6 cut(s)	457, 658, 691, 946, 1009, 1319
BccI	CCATC	3 cut(s)	151, 568, 1337
BceAI	ACGGC	3 cut(s)	311, 419, 1258
BciT130I	CCWGG	4 cut(s)	149, 386, 636, 728
BciVI	GTATCC	2 cut(s)	312, 1114
BclI	TGATCA	1 cut(s)	1278
BcoDI	GTCTC	2 cut(s)	1078, 1163
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	1 cut(s)	594
BfmI	CTRYAG	1 cut(s)	1210
BfuI	GTATCC	2 cut(s)	312, 1114
BisI	GCNGC	8 cut(s)	135, 471, 672, 705, 960, 1023, 1271, 1308
BlsI	GCNGC	8 cut(s)	136, 472, 673, 706, 961, 1024, 1272, 1309
BmcAI	AGTACT	1 cut(s)	1091
Bme1390I	CCNGG	4 cut(s)	149, 386, 636, 728
Bme18I	GGWCC	2 cut(s)	66, 579
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	448
BmgBI	CACGTC	2 cut(s)	106, 1183
BmgT120I	GGNCC	5 cut(s)	66, 324, 579, 1004, 1005
BmiI	GGNNCC	7 cut(s)	129, 146, 309, 580, 1005, 1006, 1007
BmrFI	CCNGG	4 cut(s)	149, 386, 636, 728
BmrI	ACTGGG	2 cut(s)	26, 81
BmsI	GCATC	1 cut(s)	1195
BmuI	ACTGGG	2 cut(s)	26, 81
BpiI	GAAGAC	1 cut(s)	1217
BpmI	CTGGAG	1 cut(s)	657
BsaAI	YACGTR	1 cut(s)	86
BsaBI	GATNNNNATC	1 cut(s)	1125
BsaHI	GRCGYC	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	1163
BsaJI	CCNNGG	4 cut(s)	384, 562, 582, 727
BsaWI	WCCGGW	2 cut(s)	202, 310
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 728, 914
Bse118I	RCCGGY	2 cut(s)	130, 202
Bse1I	ACTGG	4 cut(s)	32, 76, 216, 850
Bse21I	CCTNAGG	1 cut(s)	1259
Bse3DI	GCAATG	2 cut(s)	370, 1024
Bse8I	GATNNNNATC	1 cut(s)	1125
BseAI	TCCGGA	1 cut(s)	310
BseBI	CCWGG	4 cut(s)	149, 386, 636, 728
BseDI	CCNNGG	4 cut(s)	384, 562, 582, 727
BseGI	GGATG	1 cut(s)	233
BseJI	GATNNNNATC	1 cut(s)	1125
BseLI	CCNNNNNNNGG	3 cut(s)	63, 728, 914
BseMI	GCAATG	2 cut(s)	370, 1024
BseMII	CTCAG	4 cut(s)	1047, 1089, 1273, 1302
BseNI	ACTGG	4 cut(s)	32, 76, 216, 850
BseSI	GKGCMC	1 cut(s)	1008
BseXI	GCAGC	6 cut(s)	457, 658, 691, 946, 1009, 1319
BseYI	CCCAGC	1 cut(s)	998
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	326, 902, 1006
BshNI	GGYRCC	1 cut(s)	127
BshTI	ACCGGT	1 cut(s)	202
BsiHKAI	GWGCWC	2 cut(s)	115, 351
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	4 cut(s)	131, 203, 311, 1242
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	3 cut(s)	63, 728, 914
BsmAI	GTCTC	2 cut(s)	1078, 1163
BsmBI	CGTCTC	1 cut(s)	1078
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	326, 902, 1006
Bso31I	GGTCTC	1 cut(s)	1163
BsoBI	CYCGRG	1 cut(s)	448
Bsp120I	GGGCCC	1 cut(s)	1004
Bsp1286I	GDGCHC	3 cut(s)	115, 351, 1008
Bsp13I	TCCGGA	1 cut(s)	310
Bsp1407I	TGTACA	1 cut(s)	664
Bsp143I	GATC	6 cut(s)	118, 210, 241, 307, 611, 1278
Bsp19I	CCATGG	1 cut(s)	562
BspACI	CCGC	8 cut(s)	41, 58, 134, 137, 164, 1031, 1196, 1271
BspANI	GGCC	3 cut(s)	326, 902, 1006
BspCNI	CTCAG	4 cut(s)	1048, 1088, 1272, 1303
BspEI	TCCGGA	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	7 cut(s)	129, 146, 309, 580, 1005, 1006, 1007
BspPI	GGATC	4 cut(s)	126, 236, 302, 315
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	1163
BsrDI	GCAATG	2 cut(s)	370, 1024
BsrFI	RCCGGY	2 cut(s)	130, 202
BsrGI	TGTACA	1 cut(s)	664
BsrI	ACTGG	4 cut(s)	32, 76, 216, 850
BssAI	RCCGGY	2 cut(s)	130, 202
BssECI	CCNNGG	4 cut(s)	384, 562, 582, 727
BssMI	GATC	6 cut(s)	118, 210, 241, 307, 611, 1278
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	562
Bst2UI	CCWGG	4 cut(s)	149, 386, 636, 728
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	2 cut(s)	164, 810
BstACI	GRCGYC	1 cut(s)	80
BstAPI	GCANNNNNTGC	1 cut(s)	775
BstAUI	TGTACA	1 cut(s)	664
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	7 cut(s)	111, 132, 339, 396, 415, 1305, 1335
BstDEI	CTNAG	6 cut(s)	649, 1056, 1075, 1259, 1287, 1311
BstDSI	CCRYGG	2 cut(s)	562, 582
BstENI	CCTNNNNNAGG	1 cut(s)	912
BstF5I	GGATG	1 cut(s)	233
BstFNI	CGCG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	295, 862
BstKTI	GATC	6 cut(s)	121, 213, 244, 310, 614, 1281
BstMAI	GTCTC	2 cut(s)	1078, 1163
BstMBI	GATC	6 cut(s)	118, 210, 241, 307, 611, 1278
BstMWI	GCNNNNNNNGC	7 cut(s)	290, 467, 631, 775, 866, 1028, 1270
BstNI	CCWGG	4 cut(s)	149, 386, 636, 728
BstNSI	RCATGY	2 cut(s)	1136, 1307
BstSCI	CCNGG	4 cut(s)	147, 384, 634, 726
BstSFI	CTRYAG	1 cut(s)	1210
BstSLI	GKGCMC	1 cut(s)	1008
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	6 cut(s)	457, 658, 691, 946, 1009, 1319
BstV2I	GAAGAC	1 cut(s)	1217
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
Bsu36I	CCTNAGG	1 cut(s)	1259
BsuI	GTATCC	2 cut(s)	312, 1114
BsuRI	GGCC	3 cut(s)	326, 902, 1006
BtgI	CCRYGG	2 cut(s)	562, 582
BtrI	CACGTC	2 cut(s)	106, 1183
BtsCI	GGATG	1 cut(s)	233
BtsIMutI	CAGTG	2 cut(s)	69, 223
Cac8I	GCNNGC	7 cut(s)	111, 132, 339, 396, 415, 1305, 1335
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	2 cut(s)	295, 862
Cfr10I	RCCGGY	2 cut(s)	130, 202
Cfr13I	GGNCC	5 cut(s)	66, 324, 579, 1004, 1005
CseI	GACGC	2 cut(s)	88, 1060
Csp6I	GTAC	5 cut(s)	190, 238, 665, 1090, 1145
CspAI	ACCGGT	1 cut(s)	202
CviAII	CATG	9 cut(s)	302, 344, 356, 563, 631, 863, 983, 1133, 1304
CviQI	GTAC	5 cut(s)	190, 238, 665, 1090, 1145
DdeI	CTNAG	6 cut(s)	649, 1056, 1075, 1259, 1287, 1311
DpnI	GATC	6 cut(s)	120, 212, 243, 309, 613, 1280
DpnII	GATC	6 cut(s)	118, 210, 241, 307, 611, 1278
DrdI	GACNNNNNNGTC	1 cut(s)	577
DriI	GACNNNNNGTC	1 cut(s)	271
DseDI	GACNNNNNNGTC	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	900
Eam1104I	CTCTTC	2 cut(s)	164, 810
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EarI	CTCTTC	2 cut(s)	164, 810
EciI	GGCGGA	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	562
Eco24I	GRGCYC	1 cut(s)	1008
Eco31I	GGTCTC	1 cut(s)	1163
Eco47I	GGWCC	2 cut(s)	66, 579
Eco57I	CTGAAG	2 cut(s)	267, 477
Eco72I	CACGTG	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	1259
Eco88I	CYCGRG	1 cut(s)	448
EcoNI	CCTNNNNNAGG	1 cut(s)	912
EcoO109I	RGGNCCY	2 cut(s)	1004, 1005
EcoRI	GAATTC	2 cut(s)	536, 1216
EcoRII	CCWGG	4 cut(s)	147, 384, 634, 726
EcoT14I	CCWWGG	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	1008
ErhI	CCWWGG	1 cut(s)	562
Esp3I	CGTCTC	1 cut(s)	1078
FaeI	CATG	9 cut(s)	305, 347, 359, 566, 634, 866, 986, 1136, 1307
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	9 cut(s)	301, 343, 355, 562, 630, 862, 982, 1132, 1303
FauI	CCCGC	2 cut(s)	34, 65
FbaI	TGATCA	1 cut(s)	1278
Fnu4HI	GCNGC	8 cut(s)	135, 471, 672, 705, 960, 1023, 1271, 1308
FokI	GGATG	1 cut(s)	240
FriOI	GRGCYC	1 cut(s)	1008
Fsp4HI	GCNGC	8 cut(s)	135, 471, 672, 705, 960, 1023, 1271, 1308
FspBI	CTAG	1 cut(s)	594
GlaI	GCGC	2 cut(s)	294, 861
GluI	GCNGC	8 cut(s)	135, 471, 672, 705, 960, 1023, 1271, 1308
GsaI	CCCAGC	1 cut(s)	1002
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	3 cut(s)	326, 902, 1006
HapII	CCGG	4 cut(s)	131, 203, 311, 1242
HgaI	GACGC	2 cut(s)	88, 1060
HhaI	GCGC	2 cut(s)	295, 862
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	9 cut(s)	305, 347, 359, 566, 634, 866, 986, 1136, 1307
Hin6I	GCGC	2 cut(s)	293, 860
HinP1I	GCGC	2 cut(s)	293, 860
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	3 cut(s)	639, 794, 895
HpaII	CCGG	4 cut(s)	131, 203, 311, 1242
HphI	GGTGA	7 cut(s)	88, 166, 220, 343, 606, 743, 1185
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	1078, 1230
Hpy188III	TCNNGA	4 cut(s)	22, 245, 311, 450
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	242, 728
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	5 cut(s)	85, 99, 105, 188, 1182
HpyCH4V	TGCA	7 cut(s)	485, 674, 752, 769, 914, 1017, 1307
HpyF10VI	GCNNNNNNNGC	7 cut(s)	290, 467, 631, 775, 866, 1028, 1270
HpyF3I	CTNAG	6 cut(s)	649, 1056, 1075, 1259, 1287, 1311
HpySE526I	ACGT	5 cut(s)	85, 99, 105, 188, 1182
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	9 cut(s)	305, 347, 359, 566, 634, 866, 986, 1136, 1307
HspAI	GCGC	2 cut(s)	293, 860
Kpn2I	TCCGGA	1 cut(s)	310
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Ksp22I	TGATCA	1 cut(s)	1278
Kzo9I	GATC	6 cut(s)	118, 210, 241, 307, 611, 1278
LmnI	GCTCC	6 cut(s)	24, 144, 391, 422, 932, 1300
Lsp1109I	GCAGC	6 cut(s)	457, 658, 691, 946, 1009, 1319
LweI	GCATC	1 cut(s)	1195
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	5 cut(s)	85, 99, 105, 188, 1182
MaeIII	GTNAC	4 cut(s)	76, 328, 640, 943
MalI	GATC	6 cut(s)	120, 212, 243, 309, 613, 1280
MboI	GATC	6 cut(s)	118, 210, 241, 307, 611, 1278
MboII	GAAGA	4 cut(s)	181, 529, 797, 1217
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	3 cut(s)	115, 351, 1008
MlsI	TGGCCA	1 cut(s)	902
MluCI	AATT	8 cut(s)	233, 479, 536, 684, 761, 1044, 1216, 1295
MluNI	TGGCCA	1 cut(s)	902
MlyI	GAGTC	2 cut(s)	648, 889
MmeI	TCCRAC	1 cut(s)	1147
MnlI	CCTC	9 cut(s)	145, 154, 165, 561, 636, 814, 911, 918, 1268
Mox20I	TGGCCA	1 cut(s)	902
MroI	TCCGGA	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	902
MseI	TTAA	2 cut(s)	96, 687
MslI	CAYNNNNRTG	2 cut(s)	74, 88
Msp20I	TGGCCA	1 cut(s)	902
MspA1I	CMGCKG	1 cut(s)	1310
MspI	CCGG	4 cut(s)	131, 203, 311, 1242
MspR9I	CCNGG	4 cut(s)	149, 386, 636, 728
MvaI	CCWGG	4 cut(s)	149, 386, 636, 728
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	7 cut(s)	290, 467, 631, 775, 866, 1028, 1270
NaeI	GCCGGC	1 cut(s)	132
NcoI	CCATGG	1 cut(s)	562
NdeII	GATC	6 cut(s)	118, 210, 241, 307, 611, 1278
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	9 cut(s)	305, 347, 359, 566, 634, 866, 986, 1136, 1307
NlaIV	GGNNCC	7 cut(s)	129, 146, 309, 580, 1005, 1006, 1007
NmuCI	GTSAC	3 cut(s)	76, 640, 943
NspI	RCATGY	2 cut(s)	1136, 1307
OliI	CACNNNNGTG	2 cut(s)	74, 88
PaeI	GCATGC	1 cut(s)	1307
PciI	ACATGT	1 cut(s)	1132
PdiI	GCCGGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	794
PflFI	GACNNNGTC	1 cut(s)	431
PinAI	ACCGGT	1 cut(s)	202
PkrI	GCNGC	8 cut(s)	136, 472, 673, 706, 961, 1024, 1272, 1309
PleI	GAGTC	2 cut(s)	647, 889
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
PpsI	GAGTC	2 cut(s)	647, 889
Ppu21I	YACGTR	1 cut(s)	86
PscI	ACATGT	1 cut(s)	1132
Psp6I	CCWGG	4 cut(s)	147, 384, 634, 726
PspCI	CACGTG	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	998
PspGI	CCWGG	4 cut(s)	147, 384, 634, 726
PspN4I	GGNNCC	7 cut(s)	129, 146, 309, 580, 1005, 1006, 1007
PspOMI	GGGCCC	1 cut(s)	1004
PspPI	GGNCC	5 cut(s)	66, 324, 579, 1004, 1005
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	431
PvuII	CAGCTG	1 cut(s)	1310
RsaI	GTAC	5 cut(s)	191, 239, 666, 1091, 1146
RsaNI	GTAC	5 cut(s)	190, 238, 665, 1090, 1145
RseI	CAYNNNNRTG	2 cut(s)	74, 88
SaqAI	TTAA	2 cut(s)	96, 687
SatI	GCNGC	8 cut(s)	135, 471, 672, 705, 960, 1023, 1271, 1308
Sau3AI	GATC	6 cut(s)	118, 210, 241, 307, 611, 1278
Sau96I	GGNCC	5 cut(s)	66, 324, 579, 1004, 1005
ScaI	AGTACT	1 cut(s)	1091
SchI	GAGTC	2 cut(s)	648, 889
ScrFI	CCNGG	4 cut(s)	149, 386, 636, 728
SduI	GDGCHC	3 cut(s)	115, 351, 1008
SfaNI	GCATC	1 cut(s)	1195
SfcI	CTRYAG	1 cut(s)	1210
SgrAI	CRCCGGYG	1 cut(s)	202
SinI	GGWCC	2 cut(s)	66, 579
SmiMI	CAYNNNNRTG	2 cut(s)	74, 88
SpeI	ACTAGT	1 cut(s)	593
SphI	GCATGC	1 cut(s)	1307
Sse9I	AATT	8 cut(s)	233, 479, 536, 684, 761, 1044, 1216, 1295
SsiI	CCGC	8 cut(s)	41, 58, 134, 137, 164, 1031, 1196, 1271
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	4 cut(s)	147, 384, 634, 726
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	5 cut(s)	88, 102, 108, 191, 1185
TaqI	TCGA	2 cut(s)	841, 1203
TasI	AATT	8 cut(s)	233, 479, 536, 684, 761, 1044, 1216, 1295
TatI	WGTACW	2 cut(s)	664, 1089
TauI	GCSGC	2 cut(s)	137, 1273
TfiI	GAWTC	1 cut(s)	794
Tru1I	TTAA	2 cut(s)	96, 687
Tru9I	TTAA	2 cut(s)	96, 687
TscAI	CASTG	2 cut(s)	76, 223
TseFI	GTSAC	3 cut(s)	76, 640, 943
TseI	GCWGC	6 cut(s)	470, 671, 704, 959, 1022, 1307
Tsp45I	GTSAC	3 cut(s)	76, 640, 943
TspDTI	ATGAA	4 cut(s)	480, 529, 879, 983
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	2 cut(s)	76, 223
Tth111I	GACNNNGTC	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	66, 579
XagI	CCTNNNNNAGG	1 cut(s)	912
XapI	RAATTY	5 cut(s)	479, 536, 761, 1044, 1216
XceI	RCATGY	2 cut(s)	1136, 1307
XcmI	CCANNNNNNNNNTGG	2 cut(s)	385, 734
XspI	CTAG	1 cut(s)	594
ZrmI	AGTACT	1 cut(s)	1091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.