Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003711

Physical Location & Seq

Genomic Coordinates Forward (+)

34138874 .. 34140831

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1282200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGGTTGCAGAATCTGTACATTGTCAGGAGAAGGGGAGCCTCCATGCTTTTTACCTTGGTGGTTGTCATTTCTATCTTTGGTGTCTCTGCCGGAAATGTTTTTCATCTACATAGAGCCTTTCCAATGAATCACCATGTCGAGCTAGAGCAGCTCCAAGCACAGGACACAGTCAGGCACCACCAGTTTTTGGGTGGGGTTGTAAACGTGTCGGTCGCCTTACCAAAACATATCCACTATCCCATCGGGATCTATTTGACGAAGGTGAAAATAGGCTCTCCACCAAGAGAGTTCTATGTGTTGATTGACACGGGCAGTGAGGTGTTTTGGGTTTCCTGCAGTTCCTGCAATGTATGCCCTAGATTTACTGGACTTGGGATATTGGTGTATTTATTGGAAAGTGTCCTTAGTGGTTGGTTGTATATTGCCTTATGCAACTGGTCCAGGTCATTAGAGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

154

Amino Acids

17.2

Weight (kDa)

8.68

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	85 - 117	2.9e-09	Xylanase inhibitor N-terminal
Asp	PF00026	85 - 118	4.3e-08	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36670 AT2G36670 AT2G36670 AT2G36670
fragaria_vesca	FvH4_6g17290 FvH4_6g17290
malus_domestica	MD09G1292800.v1.1 MD12G1102500.v1.1 MD14G1096400.v1.1 MD16G1113800.v1.1 MD17G1282200.v1.1 MD17G1282300.v1.1 MD17G1282800.v1.1 MD17G1283200.v1.1
prunus_persica	Prupe.7G007000_v2.0.a1 Prupe.7G007500_v2.0.a1 Prupe.7G122500_v2.0.a1 Prupe.7G122500_v2.0.a1
pyrus_communis	pycom06g08820 pycom09g07760 pycom09g19650 pycom12g10050 pycom14g09440 pycom16g09750 pycom17g27920
rosa_chinensis	RchiOBHm_Chr3g0471401
rosa_laevigata	RLG00000024180
rosa_roxburghii	Rroxscaffold_6G00409970
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh3AG167400 Rh3BG192900 Rh3CG183300 Rh3DG182600
rosa_wichuraiana	Rw3G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	177
AccB7I	CCANNNNNTGG	1 cut(s)	190
AclWI	GGATC	1 cut(s)	257
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	163, 190
AflIII	ACRYGT	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	443
AluBI	AGCT	2 cut(s)	145, 154
AluI	AGCT	2 cut(s)	145, 154
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	2 cut(s)	16, 345
ApeKI	GCWGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	441
AsuHPI	GGTGA	2 cut(s)	125, 277
AvaII	GGWCC	1 cut(s)	441
BanI	GGYRCC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	2 cut(s)	146, 360
BfmI	CTRYAG	1 cut(s)	337
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	445
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	2 cut(s)	40, 179
BmrFI	CCNGG	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 190
Bse1I	ACTGG	3 cut(s)	184, 373, 443
Bse3DI	GCAATG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	445
BseDI	CCNNGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	2 cut(s)	163, 190
BseMI	GCAATG	1 cut(s)	355
BseNI	ACTGG	3 cut(s)	184, 373, 443
BseXI	GCAGC	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	177
BsiEI	CGRYCG	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	163, 190
BsmAI	GTCTC	1 cut(s)	91
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	40, 179
BspMAI	CTGCAG	1 cut(s)	341
BspPI	GGATC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	18
BsrI	ACTGG	3 cut(s)	184, 373, 443
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	445
Bst4CI	ACNGT	1 cut(s)	172
BstAPI	GCANNNNNTGC	2 cut(s)	345, 354
BstAUI	TGTACA	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	407
BstKTI	GATC	1 cut(s)	252
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	249
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 345, 354
BstNI	CCWGG	1 cut(s)	445
BstSCI	CCNGG	1 cut(s)	443
BstSFI	CTRYAG	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	249
BstYI	RGATCY	1 cut(s)	249
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	322
CaiI	CAGNNNCTG	2 cut(s)	16, 345
Cfr13I	GGNCC	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	2 cut(s)	46, 137
CviJI	RGCY	5 cut(s)	41, 119, 145, 154, 276
CviKI_1	RGCY	5 cut(s)	41, 119, 145, 154, 276
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	49, 140
FaiI	YATR	8 cut(s)	47, 114, 138, 231, 297, 355, 423, 433
FatI	CATG	2 cut(s)	45, 136
Fnu4HI	GCNGC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	2 cut(s)	146, 360
GluI	GCNGC	1 cut(s)	152
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	2 cut(s)	49, 140
HinfI	GANTC	2 cut(s)	13, 130
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	2 cut(s)	125, 277
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188III	TCNNGA	2 cut(s)	28, 247
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	27, 256
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	4 cut(s)	10, 339, 348, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 345, 354
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	2 cut(s)	49, 140
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	2 cut(s)	38, 159
Lsp1109I	GCAGC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	146, 360
MaeII	ACGT	1 cut(s)	207
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MflI	RGATCY	1 cut(s)	249
MnlI	CCTC	2 cut(s)	52, 313
MslI	CAYNNNNRTG	1 cut(s)	454
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	445
MwoI	GCNNNNNNNGC	3 cut(s)	151, 345, 354
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	2 cut(s)	49, 140
NlaIV	GGNNCC	2 cut(s)	40, 179
PfeI	GAWTC	2 cut(s)	13, 130
PflFI	GACNNNGTC	1 cut(s)	170
PflMI	CCANNNNNTGG	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	443
PspN4I	GGNNCC	2 cut(s)	40, 179
PspPI	GGNCC	1 cut(s)	441
PstI	CTGCAG	1 cut(s)	341
PstNI	CAGNNNCTG	2 cut(s)	16, 345
PsuI	RGATCY	1 cut(s)	249
PsyI	GACNNNGTC	1 cut(s)	170
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	454
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	1 cut(s)	441
ScrFI	CCNGG	1 cut(s)	445
SetI	ASST	7 cut(s)	59, 147, 156, 210, 267, 324, 449
SfcI	CTRYAG	1 cut(s)	337
SinI	GGWCC	1 cut(s)	441
SmiMI	CAYNNNNRTG	1 cut(s)	454
SspMI	CTAG	2 cut(s)	146, 360
StyD4I	CCNGG	1 cut(s)	443
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	141
TaqII	GACCGA	1 cut(s)	202
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	13, 130
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	95, 143
TspRI	CASTG	1 cut(s)	322
Tth111I	GACNNNGTC	1 cut(s)	170
Van91I	CCANNNNNTGG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191
XspI	CTAG	2 cut(s)	146, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.