Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003711

Physical Location & Seq

Genomic Coordinates Forward (+)

6606759 .. 6608553

Gene Structure 1795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g09750.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGATCTATCAACACCCATTATTTTTGGGTGTGCTACCACGGTGTCCAGTCTTTTGGCTAGGACTGAGGTTTCACTCAATGGGGTATTGGGATTGAGCCAAGGCCCATTGTCTGTCATATCACAGTTATCTTCTCGAGGGATAACTCCGAGTGTCTTCTCTCACTGTTTAAAGGGAGATGGAAATGGTGGAGGTATACTCGTACTCGGAGAGATTTTGGAGCCGAGTATTGTGTATACTCCCCTTGTCCCCAAAAAGTCTTATTATGCAATCAACCTTGAAAGCATTGCAGTCAATGGACAAATTTTGCCCATTGATCCATCAACTTTCAGAACATCAGATGAGCGTGCAACTTTTGTCGACACGGGAACCACGTTGGCATTTTTTGTAGAAGAGGCATATGAACCTCTTGTCCATGCAATAACTTCGGCTTCCAATTTTGTGTCTCTGATCATTTCAGAAGAGTCCCAATGTTATATGATCTACACCAGTTTGGGAAAGTCATTTCCTTCGGTCACACTCAACTTTGCAGCTGGTGCGTCAATGACTTTGAAACCACAAGACTACCTGCTATATTCAGTATCTCATGTTGGTGCTGCCATGTGGTGCTTAGGTTTCAAGAAAGCTCATGGAGCAAGCCAGGGCTTCACAGTGTTAGGAGATCTTGTTCTGAGGGATAAGATTGTGGTATATGATTTAGCCCGTCAACAACTCGGATGGGCTAATTACAACTGCGCATCTCCGGTGAATTTCTCTACGGCTTTTCATCCAGCACACCGAAGTGGAAGCAGTGGCTCATCAGGAGACACACTAATCAAGCTGCTAAAAACTGGGATTGTGCTCCTCTTGATGCATTTGTTCAATCTGTATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

292

Amino Acids

31.15

Weight (kDa)

6.14

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36670 AT2G36670 AT2G36670 AT2G36670
fragaria_vesca	FvH4_6g17290 FvH4_6g17290
malus_domestica	MD09G1292800.v1.1 MD12G1102500.v1.1 MD14G1096400.v1.1 MD16G1113800.v1.1 MD17G1282200.v1.1 MD17G1282300.v1.1 MD17G1282800.v1.1 MD17G1283200.v1.1
prunus_persica	Prupe.7G007000_v2.0.a1 Prupe.7G007500_v2.0.a1 Prupe.7G122500_v2.0.a1 Prupe.7G122500_v2.0.a1
pyrus_communis	pycom06g08820 pycom09g07760 pycom09g19650 pycom12g10050 pycom14g09440 pycom16g09750 pycom17g27920
rosa_chinensis	RchiOBHm_Chr3g0471401
rosa_laevigata	RLG00000024180
rosa_roxburghii	Rroxscaffold_6G00409970
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh3AG167400 Rh3BG192900 Rh3CG183300 Rh3DG182600
rosa_wichuraiana	Rw3G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	736
Acc36I	ACCTGC	1 cut(s)	576
AccI	GTMKAC	3 cut(s)	196, 236, 360
AclWI	GGATC	2 cut(s)	12, 311
AcsI	RAATTY	2 cut(s)	303, 748
AfaI	GTAC	1 cut(s)	204
AgsI	TTSAA	4 cut(s)	281, 553, 619, 862
AjnI	CCWGG	1 cut(s)	639
AleI	CACNNNNGTG	1 cut(s)	780
AloI	GAACNNNNNNTCC	4 cut(s)	396, 428, 651, 683
AluBI	AGCT	3 cut(s)	533, 626, 820
AluI	AGCT	3 cut(s)	533, 626, 820
Alw21I	GWGCWC	1 cut(s)	843
Alw26I	GTCTC	2 cut(s)	450, 798
AlwI	GGATC	2 cut(s)	12, 311
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	3 cut(s)	530, 596, 820
ApoI	RAATTY	2 cut(s)	303, 748
AspLEI	GCGC	1 cut(s)	737
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	757
AvaI	CYCGRG	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	843
BbvI	GCAGC	3 cut(s)	542, 583, 807
BccI	CCATC	3 cut(s)	173, 328, 711
BceAI	ACGGC	1 cut(s)	774
BcgI	CGANNNNNNTGC	2 cut(s)	408, 442
BciT130I	CCWGG	1 cut(s)	641
BclI	TGATCA	1 cut(s)	450
BcoDI	GTCTC	2 cut(s)	450, 798
BfaI	CTAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	576
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	3 cut(s)	531, 597, 821
BlsI	GCNGC	3 cut(s)	532, 598, 822
Bme1390I	CCNGG	1 cut(s)	641
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	2 cut(s)	222, 370
BmrFI	CCNGG	1 cut(s)	641
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	2 cut(s)	746, 840
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	183, 215
Bpu10I	CCTNAGC	1 cut(s)	610
BsaJI	CCNNGG	3 cut(s)	39, 100, 640
BsaWI	WCCGGW	1 cut(s)	742
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bse1I	ACTGG	3 cut(s)	48, 489, 835
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	641
BseDI	CCNNGG	3 cut(s)	39, 100, 640
BseGI	GGATG	2 cut(s)	722, 766
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	57, 662
BseNI	ACTGG	3 cut(s)	48, 489, 835
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	3 cut(s)	542, 583, 807
BshFI	GGCC	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	843
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	743
BslFI	GGGAC	2 cut(s)	233, 451
BsmAI	GTCTC	2 cut(s)	450, 798
BsmFI	GGGAC	2 cut(s)	233, 451
BsnI	GGCC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	843
Bsp143I	GATC	5 cut(s)	4, 316, 450, 480, 661
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	2 cut(s)	58, 663
BspLI	GGNNCC	2 cut(s)	222, 370
BspMI	ACCTGC	1 cut(s)	576
BspPI	GGATC	2 cut(s)	12, 311
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	48, 489, 835
BssECI	CCNNGG	3 cut(s)	39, 100, 640
BssMI	GATC	5 cut(s)	4, 316, 450, 480, 661
BssNAI	GTATAC	2 cut(s)	197, 237
BssT1I	CCWWGG	1 cut(s)	100
Bst1107I	GTATAC	2 cut(s)	197, 237
Bst2UI	CCWGG	1 cut(s)	641
Bst4CI	ACNGT	4 cut(s)	43, 126, 167, 652
Bst6I	CTCTTC	2 cut(s)	387, 456
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	348, 637
BstDEI	CTNAG	3 cut(s)	66, 610, 671
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	722, 766
BstHHI	GCGC	1 cut(s)	737
BstKTI	GATC	5 cut(s)	7, 319, 453, 483, 664
BstMAI	GTCTC	2 cut(s)	450, 798
BstMBI	GATC	5 cut(s)	4, 316, 450, 480, 661
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 632
BstNI	CCWGG	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	639
BstV1I	GCAGC	3 cut(s)	542, 583, 807
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	4, 661
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	2 cut(s)	4, 661
BstZ17I	GTATAC	2 cut(s)	197, 237
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	722, 766
BtsI	GCAGTG	1 cut(s)	796
BtsIMutI	CAGTG	3 cut(s)	163, 657, 796
BveI	ACCTGC	1 cut(s)	576
Cac8I	GCNNGC	2 cut(s)	348, 637
CfoI	GCGC	1 cut(s)	737
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	528
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	4 cut(s)	416, 587, 601, 629
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	3 cut(s)	66, 610, 671
DpnI	GATC	5 cut(s)	6, 318, 452, 482, 663
DpnII	GATC	5 cut(s)	4, 316, 450, 480, 661
DraI	TTTAAA	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	387, 456
EarI	CTCTTC	2 cut(s)	387, 456
Eco130I	CCWWGG	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	639
EcoT14I	CCWWGG	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	855
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	4 cut(s)	419, 590, 604, 632
FaqI	GGGAC	2 cut(s)	233, 451
FatI	CATG	4 cut(s)	415, 586, 600, 628
FauNDI	CATATG	1 cut(s)	400
FbaI	TGATCA	1 cut(s)	450
FblI	GTMKAC	3 cut(s)	196, 236, 360
Fnu4HI	GCNGC	3 cut(s)	531, 597, 821
FokI	GGATG	2 cut(s)	729, 753
Fsp4HI	GCNGC	3 cut(s)	531, 597, 821
FspBI	CTAG	1 cut(s)	60
FspI	TGCGCA	1 cut(s)	736
GlaI	GCGC	1 cut(s)	736
GluI	GCNGC	3 cut(s)	531, 597, 821
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	743
HgaI	GACGC	1 cut(s)	528
HhaI	GCGC	1 cut(s)	737
Hin1II	CATG	4 cut(s)	419, 590, 604, 632
Hin6I	GCGC	1 cut(s)	735
HinP1I	GCGC	1 cut(s)	735
HincII	GTYRAC	2 cut(s)	361, 707
HindII	GTYRAC	2 cut(s)	361, 707
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	1 cut(s)	743
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	4 cut(s)	197, 237, 361, 707
Hpy188I	TCNGA	8 cut(s)	150, 209, 332, 340, 450, 460, 672, 716
Hpy188III	TCNNGA	4 cut(s)	135, 619, 801, 847
Hpy8I	GTNNAC	4 cut(s)	197, 237, 361, 707
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	4 cut(s)	43, 126, 167, 652
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	6 cut(s)	269, 290, 350, 419, 530, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 632
HpyF3I	CTNAG	3 cut(s)	66, 610, 671
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	4 cut(s)	419, 590, 604, 632
HspAI	GCGC	1 cut(s)	735
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	5 cut(s)	4, 316, 450, 480, 661
LmnI	GCTCC	3 cut(s)	220, 632, 846
Lsp1109I	GCAGC	3 cut(s)	542, 583, 807
LweI	GCATC	2 cut(s)	746, 840
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	5 cut(s)	6, 318, 452, 482, 663
MboI	GATC	5 cut(s)	4, 316, 450, 480, 661
MboII	GAAGA	4 cut(s)	123, 148, 404, 473
MflI	RGATCY	2 cut(s)	4, 661
MhlI	GDGCHC	1 cut(s)	843
MluCI	AATT	4 cut(s)	303, 436, 724, 748
MlyI	GAGTC	1 cut(s)	473
MnlI	CCTC	7 cut(s)	61, 131, 185, 388, 417, 666, 854
Mph1103I	ATGCAT	1 cut(s)	855
MseI	TTAA	1 cut(s)	170
MslI	CAYNNNNRTG	2 cut(s)	591, 780
MspA1I	CMGCKG	1 cut(s)	533
MspI	CCGG	1 cut(s)	743
MspR9I	CCNGG	1 cut(s)	641
MvaI	CCWGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	2 cut(s)	536, 632
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	5 cut(s)	4, 316, 450, 480, 661
NlaIII	CATG	4 cut(s)	419, 590, 604, 632
NlaIV	GGNNCC	2 cut(s)	222, 370
NmeAIII	GCCGAG	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	514
NsbI	TGCGCA	1 cut(s)	736
NsiI	ATGCAT	1 cut(s)	855
OliI	CACNNNNGTG	1 cut(s)	780
PaeR7I	CTCGAG	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	532, 598, 822
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	639
PspGI	CCWGG	1 cut(s)	639
PspN4I	GGNNCC	2 cut(s)	222, 370
PspPI	GGNCC	1 cut(s)	104
PsuI	RGATCY	2 cut(s)	4, 661
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	2 cut(s)	591, 780
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	3 cut(s)	531, 597, 821
Sau3AI	GATC	5 cut(s)	4, 316, 450, 480, 661
Sau96I	GGNCC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	641
SduI	GDGCHC	1 cut(s)	843
SfaNI	GCATC	2 cut(s)	746, 840
Sfr274I	CTCGAG	1 cut(s)	135
SlaI	CTCGAG	1 cut(s)	135
SmiMI	CAYNNNNRTG	2 cut(s)	591, 780
SmlI	CTYRAG	1 cut(s)	135
SmoI	CTYRAG	1 cut(s)	135
Sse9I	AATT	4 cut(s)	303, 436, 724, 748
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	639
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	4 cut(s)	43, 126, 167, 652
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	2 cut(s)	136, 360
TaqII	GACCGA	1 cut(s)	502
TasI	AATT	4 cut(s)	303, 436, 724, 748
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	3 cut(s)	170, 657, 796
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	3 cut(s)	530, 596, 820
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	417, 755
TspRI	CASTG	3 cut(s)	170, 657, 796
XapI	RAATTY	2 cut(s)	303, 748
XhoI	CTCGAG	1 cut(s)	135
XmiI	GTMKAC	3 cut(s)	196, 236, 360
XspI	CTAG	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.