Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003711

Physical Location & Seq

Genomic Coordinates Forward (+)

16125676 .. 16132247

Gene Structure 6572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG183300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGCGGGCCTCTCTTGCCCCGATCTTGGCCCTCCTCGCCCTCCTAACCTCCCCCTCTCTCCTCCCTTCCGCCGCCGCCACCACCACCGCCGCCGCCGCCACTTTTCTGGCTCTCCACAGAGCCTTCCCGCCGACCCACCACCGCGTCCAACTCGACCGCCTCCGCGCGCGTGACCGAGCCCGCCACAGCCGCCTCCTCCAAAACGTCGTCGTCGGCGGCGTCGTCGACTTCTCAGTCGCCGGCTCCTCCGATCCCTACCTCGTCGGGCTTTATTTTACAAAAGTAAAATTGGGCTCTCCACCAAAAGAGTACAATGTGCAGATCGATACCGGAAGCGACATCTTGTGGATTACCTGCAATTCCTGCAGTAATTGCCCCCAGACTAGCGGACTTGGGATTCAGCTCAATTTATATGATTCTGGCAGCTCCTCAACTGCGGGGCAGATCTCCTGTTCAGATCCAATATGCAGTTCTGCGGTTCAAACTTCAGCAACAGAGTGCTCTGAGAGTAACCAGTGCAGTTACACTTTCCAATATGGCGATGGAAGTGGGACGTCTGGTGTCTATGTATCAGATGCACTATATTTCGACATGATTCTGGAGCAGTCTTTTATGGCCAACTCTTCAGCTGCCATCGTTTTCGGGTGTAGTACCTATCAGTCTGGGGATTTGACCAAGACAGATAAAGCGGTGGATGGGATATTTGGGTTCGGCCAAGGGGCATTGTCTGTTATATCCCAGTTGTCATATCGAGGGATAACTCCCAAAGTATTTTCCCATTGTTTGAAGGGAGATGGCAATGGTGGGGGTATACTTGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCCCTCGTTCCATCACAGCCTCATTATAATTTAAATCTTCAGAGCATTGCTGTCAATGGGCAACTCTTACCAATTGATCCAATAGCCTTCACCACATCAAACAGCCGGGGAACTATTGTTGACTCAGGCACAACTTTGACATACCTTGTGGAGGAAGCTTATGATCCTTTTGTCAGTGCTATAACATCGGCTGTTTCACAATCTGCAACTCCCCTTATTTCAAAAGGAAACCAGTGTTATCTAGTCTCCAACAGTTTGGCTGAGGTGTTTCCTCCCGTTAGTCTAAACTTCGCAGCTGGTGCATCGATGGTGTTGAAACCAGAAGAGTACCTTGTACATACGGGTTTCATTGAAGGTGCTGCTATGTGGTGCATTGGCTTTCAGAAGGTTCAGGGAGGGGTGACAATTTTAGGAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

424

Amino Acids

44.55

Weight (kDa)

5.2

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	91 - 275	1.2e-41	Xylanase inhibitor N-terminal
Asp	PF00026	91 - 423	2.9e-22	Eukaryotic aspartyl protease
TAXi_C	PF14541	293 - 416	6.2e-19	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36670 AT2G36670 AT2G36670 AT2G36670
fragaria_vesca	FvH4_6g17290 FvH4_6g17290
malus_domestica	MD09G1292800.v1.1 MD12G1102500.v1.1 MD14G1096400.v1.1 MD16G1113800.v1.1 MD17G1282200.v1.1 MD17G1282300.v1.1 MD17G1282800.v1.1 MD17G1283200.v1.1
prunus_persica	Prupe.7G007000_v2.0.a1 Prupe.7G007500_v2.0.a1 Prupe.7G122500_v2.0.a1 Prupe.7G122500_v2.0.a1
pyrus_communis	pycom06g08820 pycom09g07760 pycom09g19650 pycom12g10050 pycom14g09440 pycom16g09750 pycom17g27920
rosa_chinensis	RchiOBHm_Chr3g0471401
rosa_laevigata	RLG00000024180
rosa_roxburghii	Rroxscaffold_6G00409970
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh3AG167400 Rh3BG192900 Rh3CG183300 Rh3DG182600
rosa_wichuraiana	Rw3G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	882
AasI	GACNNNNNNGTC	1 cut(s)	233
AatII	GACGTC	1 cut(s)	557
Acc36I	ACCTGC	1 cut(s)	362
AccI	GTMKAC	2 cut(s)	225, 811
AccII	CGCG	4 cut(s)	144, 165, 167, 169
AclWI	GGATC	4 cut(s)	245, 452, 926, 1013
AcoI	YGGCCR	2 cut(s)	615, 712
AcuI	CTGAAG	3 cut(s)	471, 609, 878
AcyI	GRCGYC	2 cut(s)	219, 554
AfaI	GTAC	4 cut(s)	311, 652, 1184, 1191
AfiI	CCNNNNNNNGG	2 cut(s)	25, 1006
AgsI	TTSAA	5 cut(s)	482, 787, 1077, 1171, 1208
AjuI	GAANNNNNNNTTGG	2 cut(s)	454, 486
AluBI	AGCT	5 cut(s)	403, 426, 629, 1013, 1151
AluI	AGCT	5 cut(s)	403, 426, 629, 1013, 1151
Alw21I	GWGCWC	1 cut(s)	503
Alw26I	GTCTC	1 cut(s)	1105
AlwI	GGATC	4 cut(s)	245, 452, 926, 1013
AoxI	GGCC	4 cut(s)	6, 27, 615, 712
ApeKI	GCWGC	4 cut(s)	423, 629, 1148, 1214
AspLEI	GCGC	2 cut(s)	167, 169
AspS9I	GGNCC	2 cut(s)	6, 28
AsuC2I	CCSGG	1 cut(s)	962
AsuHPI	GGTGA	3 cut(s)	836, 937, 1267
BalI	TGGCCA	1 cut(s)	617
BanII	GRGCYC	2 cut(s)	181, 296
Bbv12I	GWGCWC	1 cut(s)	503
BbvCI	CCTCAGC	1 cut(s)	1116
BbvI	GCAGC	4 cut(s)	435, 616, 1160, 1201
BccI	CCATC	6 cut(s)	536, 641, 689, 788, 874, 1156
BcnI	CCSGG	1 cut(s)	962
BcoDI	GTCTC	1 cut(s)	1105
BfaI	CTAG	2 cut(s)	384, 1097
BfmI	CTRYAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	362
BglII	AGATCT	1 cut(s)	444
Bme1390I	CCNGG	1 cut(s)	962
BmgT120I	GGNCC	2 cut(s)	6, 28
BmiI	GGNNCC	2 cut(s)	244, 837
BmrFI	CCNGG	1 cut(s)	962
BmrI	ACTGGG	1 cut(s)	733
BmsI	GCATC	2 cut(s)	565, 1166
BmuI	ACTGGG	1 cut(s)	733
BpmI	CTGGAG	1 cut(s)	620
Bpu10I	CCTNAGC	1 cut(s)	1116
BpuMI	CCSGG	1 cut(s)	962
Bsa29I	ATCGAT	2 cut(s)	324, 1160
BsaHI	GRCGYC	2 cut(s)	219, 554
BsaJI	CCNNGG	2 cut(s)	715, 961
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 1006
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	3 cut(s)	514, 739, 1087
Bse3DI	GCAATG	2 cut(s)	805, 900
BseCI	ATCGAT	2 cut(s)	324, 1160
BseDI	CCNNGG	2 cut(s)	715, 961
BseGI	GGATG	1 cut(s)	700
BseLI	CCNNNNNNNGG	2 cut(s)	25, 1006
BseMI	GCAATG	2 cut(s)	805, 900
BseMII	CTCAG	4 cut(s)	246, 495, 993, 1107
BseNI	ACTGG	3 cut(s)	514, 739, 1087
BsePI	GCGCGC	1 cut(s)	165
BseRI	GAGGAG	5 cut(s)	23, 50, 185, 235, 418
BseXI	GCAGC	4 cut(s)	435, 616, 1160, 1201
BsgI	GTGCAG	2 cut(s)	338, 538
Bsh1236I	CGCG	4 cut(s)	144, 165, 167, 169
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	4 cut(s)	8, 29, 617, 714
BshVI	ATCGAT	2 cut(s)	324, 1160
BsiEI	CGRYCG	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	503
BsiSI	CCGG	3 cut(s)	240, 330, 961
BslFI	GGGAC	2 cut(s)	565, 840
BslI	CCNNNNNNNGG	2 cut(s)	25, 1006
BsmAI	GTCTC	1 cut(s)	1105
BsmFI	GGGAC	2 cut(s)	565, 840
BsnI	GGCC	4 cut(s)	8, 29, 617, 714
Bsp1286I	GDGCHC	3 cut(s)	181, 296, 503
Bsp1407I	TGTACA	1 cut(s)	1189
Bsp143I	GATC	7 cut(s)	21, 250, 321, 444, 457, 931, 1018
BspANI	GGCC	4 cut(s)	8, 29, 617, 714
BspCNI	CTCAG	4 cut(s)	245, 496, 992, 1108
BspDI	ATCGAT	2 cut(s)	324, 1160
BspFNI	CGCG	4 cut(s)	144, 165, 167, 169
BspLI	GGNNCC	2 cut(s)	244, 837
BspMAI	CTGCAG	1 cut(s)	368
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	4 cut(s)	245, 452, 926, 1013
BsrDI	GCAATG	2 cut(s)	805, 900
BsrFI	RCCGGY	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	1189
BsrI	ACTGG	3 cut(s)	514, 739, 1087
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	2 cut(s)	715, 961
BssHII	GCGCGC	1 cut(s)	165
BssMI	GATC	7 cut(s)	21, 250, 321, 444, 457, 931, 1018
BssNAI	GTATAC	1 cut(s)	812
BssNI	GRCGYC	2 cut(s)	219, 554
BssT1I	CCWWGG	1 cut(s)	715
Bst1107I	GTATAC	1 cut(s)	812
Bst4CI	ACNGT	1 cut(s)	1109
Bst6I	CTCTTC	2 cut(s)	628, 1173
BstACI	GRCGYC	2 cut(s)	219, 554
BstAPI	GCANNNNNTGC	3 cut(s)	363, 372, 1154
BstAUI	TGTACA	1 cut(s)	1189
BstC8I	GCNNGC	4 cut(s)	6, 167, 181, 241
BstDEI	CTNAG	4 cut(s)	232, 504, 979, 1116
BstENI	CCTNNNNNAGG	1 cut(s)	1004
BstF5I	GGATG	1 cut(s)	700
BstFNI	CGCG	4 cut(s)	144, 165, 167, 169
BstHHI	GCGC	2 cut(s)	167, 169
BstKTI	GATC	7 cut(s)	24, 253, 324, 447, 460, 934, 1021
BstMAI	GTCTC	1 cut(s)	1105
BstMBI	GATC	7 cut(s)	21, 250, 321, 444, 457, 931, 1018
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 35, 95, 189, 363, 372, 1154
BstSCI	CCNGG	1 cut(s)	960
BstSFI	CTRYAG	1 cut(s)	364
BstUI	CGCG	4 cut(s)	144, 165, 167, 169
BstV1I	GCAGC	4 cut(s)	435, 616, 1160, 1201
BstX2I	RGATCY	2 cut(s)	444, 457
BstXI	CCANNNNNNTGG	2 cut(s)	106, 1111
BstYI	RGATCY	2 cut(s)	444, 457
BstZ17I	GTATAC	1 cut(s)	812
Bsu15I	ATCGAT	2 cut(s)	324, 1160
BsuRI	GGCC	4 cut(s)	8, 29, 617, 714
BsuTUI	ATCGAT	2 cut(s)	324, 1160
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	1 cut(s)	700
BtsIMutI	CAGTG	3 cut(s)	521, 1036, 1094
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	4 cut(s)	6, 167, 181, 241
CfoI	GCGC	2 cut(s)	167, 169
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	6, 28
ClaI	ATCGAT	2 cut(s)	324, 1160
CseI	GACGC	2 cut(s)	133, 208
Csp6I	GTAC	4 cut(s)	310, 651, 1183, 1190
CviAII	CATG	1 cut(s)	592
CviQI	GTAC	4 cut(s)	310, 651, 1183, 1190
DdeI	CTNAG	4 cut(s)	232, 504, 979, 1116
DpnI	GATC	7 cut(s)	23, 252, 323, 446, 459, 933, 1020
DpnII	GATC	7 cut(s)	21, 250, 321, 444, 457, 931, 1018
DraI	TTTAAA	1 cut(s)	888
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	2 cut(s)	615, 712
Eam1104I	CTCTTC	2 cut(s)	628, 1173
EarI	CTCTTC	2 cut(s)	628, 1173
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	715
Eco24I	GRGCYC	2 cut(s)	181, 296
Eco57I	CTGAAG	3 cut(s)	471, 609, 878
EcoNI	CCTNNNNNAGG	1 cut(s)	1004
EcoT14I	CCWWGG	1 cut(s)	715
EcoT38I	GRGCYC	2 cut(s)	181, 296
ErhI	CCWWGG	1 cut(s)	715
FaeI	CATG	1 cut(s)	595
FalI	AAGNNNNNCTT	2 cut(s)	1170, 1202
FaqI	GGGAC	2 cut(s)	565, 840
FatI	CATG	1 cut(s)	591
FauI	CCCGC	3 cut(s)	135, 188, 430
FblI	GTMKAC	2 cut(s)	225, 811
FokI	GGATG	1 cut(s)	707
FriOI	GRGCYC	2 cut(s)	181, 296
FspBI	CTAG	2 cut(s)	384, 1097
GlaI	GCGC	2 cut(s)	166, 168
GsuI	CTGGAG	1 cut(s)	620
HaeIII	GGCC	4 cut(s)	8, 29, 617, 714
HapII	CCGG	3 cut(s)	240, 330, 961
HgaI	GACGC	2 cut(s)	133, 208
HhaI	GCGC	2 cut(s)	167, 169
Hin1I	GRCGYC	2 cut(s)	219, 554
Hin1II	CATG	1 cut(s)	595
Hin6I	GCGC	2 cut(s)	165, 167
HinP1I	GCGC	2 cut(s)	165, 167
HincII	GTYRAC	2 cut(s)	226, 976
HindII	GTYRAC	2 cut(s)	226, 976
HindIII	AAGCTT	1 cut(s)	1011
HinfI	GANTC	4 cut(s)	397, 416, 595, 977
HpaII	CCGG	3 cut(s)	240, 330, 961
HphI	GGTGA	3 cut(s)	836, 937, 1267
Hpy166II	GTNNAC	3 cut(s)	226, 812, 976
Hpy188I	TCNGA	6 cut(s)	250, 457, 505, 574, 897, 1239
Hpy188III	TCNNGA	1 cut(s)	599
Hpy8I	GTNNAC	3 cut(s)	226, 812, 976
Hpy99I	CGWCG	6 cut(s)	209, 212, 215, 224, 227, 266
HpyAV	CCTTC	6 cut(s)	75, 133, 781, 952, 1202, 1234
HpyCH4III	ACNGT	1 cut(s)	1109
HpyCH4IV	ACGT	2 cut(s)	204, 554
HpyCH4V	TGCA	9 cut(s)	319, 357, 366, 468, 519, 578, 1061, 1157, 1227
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 35, 95, 189, 363, 372, 1154
HpyF3I	CTNAG	4 cut(s)	232, 504, 979, 1116
HpySE526I	ACGT	2 cut(s)	204, 554
Hsp92I	GRCGYC	2 cut(s)	219, 554
Hsp92II	CATG	1 cut(s)	595
HspAI	GCGC	2 cut(s)	165, 167
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Kzo9I	GATC	7 cut(s)	21, 250, 321, 444, 457, 931, 1018
LmnI	GCTCC	4 cut(s)	248, 431, 601, 835
Lsp1109I	GCAGC	4 cut(s)	435, 616, 1160, 1201
LweI	GCATC	2 cut(s)	565, 1166
MaeI	CTAG	2 cut(s)	384, 1097
MaeII	ACGT	2 cut(s)	204, 554
MaeIII	GTNAC	4 cut(s)	170, 509, 521, 1255
MalI	GATC	7 cut(s)	23, 252, 323, 446, 459, 933, 1020
MauBI	CGCGCGCG	1 cut(s)	165
MboI	GATC	7 cut(s)	21, 250, 321, 444, 457, 931, 1018
MboII	GAAGA	3 cut(s)	615, 884, 1190
MfeI	CAATTG	1 cut(s)	927
MflI	RGATCY	2 cut(s)	444, 457
MhlI	GDGCHC	3 cut(s)	181, 296, 503
MlsI	TGGCCA	1 cut(s)	617
MluCI	AATT	7 cut(s)	287, 358, 370, 406, 883, 927, 1260
MluNI	TGGCCA	1 cut(s)	617
MlyI	GAGTC	1 cut(s)	971
MmeI	TCCRAC	2 cut(s)	172, 1128
Mox20I	TGGCCA	1 cut(s)	617
MroNI	GCCGGC	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	617
MseI	TTAA	1 cut(s)	887
Msp20I	TGGCCA	1 cut(s)	617
MspA1I	CMGCKG	2 cut(s)	629, 1151
MspI	CCGG	3 cut(s)	240, 330, 961
MspR9I	CCNGG	1 cut(s)	962
MunI	CAATTG	1 cut(s)	927
MvnI	CGCG	4 cut(s)	144, 165, 167, 169
MwoI	GCNNNNNNNGC	7 cut(s)	14, 35, 95, 189, 363, 372, 1154
NaeI	GCCGGC	1 cut(s)	241
NciI	CCSGG	1 cut(s)	962
NdeII	GATC	7 cut(s)	21, 250, 321, 444, 457, 931, 1018
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	1 cut(s)	595
NlaIV	GGNNCC	2 cut(s)	244, 837
NmuCI	GTSAC	2 cut(s)	170, 1255
PauI	GCGCGC	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 219
PdiI	GCCGGC	1 cut(s)	241
PfeI	GAWTC	3 cut(s)	397, 416, 595
PleI	GAGTC	1 cut(s)	971
PpsI	GAGTC	1 cut(s)	971
PsiI	TTATAA	1 cut(s)	882
PspN4I	GGNNCC	2 cut(s)	244, 837
PspPI	GGNCC	2 cut(s)	6, 28
PstI	CTGCAG	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	444, 457
PteI	GCGCGC	1 cut(s)	165
PvuII	CAGCTG	2 cut(s)	629, 1151
RsaI	GTAC	4 cut(s)	311, 652, 1184, 1191
RsaNI	GTAC	4 cut(s)	310, 651, 1183, 1190
SalI	GTCGAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	887
Sau3AI	GATC	7 cut(s)	21, 250, 321, 444, 457, 931, 1018
Sau96I	GGNCC	2 cut(s)	6, 28
SchI	GAGTC	1 cut(s)	971
ScrFI	CCNGG	1 cut(s)	962
SduI	GDGCHC	3 cut(s)	181, 296, 503
SfaNI	GCATC	2 cut(s)	565, 1166
SfcI	CTRYAG	1 cut(s)	364
SmiI	ATTTAAAT	1 cut(s)	888
Sse9I	AATT	7 cut(s)	287, 358, 370, 406, 883, 927, 1260
SspMI	CTAG	2 cut(s)	384, 1097
StyD4I	CCNGG	1 cut(s)	960
StyI	CCWWGG	1 cut(s)	715
SwaI	ATTTAAAT	1 cut(s)	888
TaaI	ACNGT	1 cut(s)	1109
TaiI	ACGT	2 cut(s)	207, 557
TaqI	TCGA	6 cut(s)	153, 225, 324, 588, 751, 1160
TaqII	GACCGA	1 cut(s)	189
TasI	AATT	7 cut(s)	287, 358, 370, 406, 883, 927, 1260
TatI	WGTACW	2 cut(s)	309, 1189
TauI	GCSGC	7 cut(s)	74, 77, 92, 95, 98, 192, 219
TfiI	GAWTC	3 cut(s)	397, 416, 595
Tru1I	TTAA	1 cut(s)	887
Tru9I	TTAA	1 cut(s)	887
TscAI	CASTG	3 cut(s)	521, 1036, 1094
TseFI	GTSAC	2 cut(s)	170, 1255
TseI	GCWGC	4 cut(s)	423, 629, 1148, 1214
Tsp45I	GTSAC	2 cut(s)	170, 1255
TspDTI	ATGAA	1 cut(s)	1192
TspRI	CASTG	3 cut(s)	521, 1036, 1094
XagI	CCTNNNNNAGG	1 cut(s)	1004
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XmiI	GTMKAC	2 cut(s)	225, 811
XspI	CTAG	2 cut(s)	384, 1097
ZraI	GACGTC	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.