pycom09g19650

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
20507084 .. 20509343
2260 bp
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UTR
Exon/CDS
Intron
pycom09g19650.2

Sequence Viewer

Length: 600 bp
ATGTGCGGCAAATGCTCTCGTCAAAGCCACCGGTGCAACTATGATATGACATATTCCGGCGGAAATCGCATCACTAGTTGTCTCGTATCAGATGTGCTGCATCTTGACACTATTCCAGTGCGATCTTATGTTGCATTGGAATCTTCAGCACCCATTGTTTTCGGGTGTACCACTTCTGTATCCGGACTTTTGGCTGGGACCCGAGCCTCAGTCAATGGGATATTTGGCTTTAGCCAAGGTCCCATGTCTGTTCTATCGCAGTTGTCTTCACGAGGAATGACTCCCAGCGTGTTCTCCCACTGTTTGAAAGGAGATGACTATGGTGGGGTTATACTCATACTTGGTGACATTTTGGAGCCGAGTATTGTTTATACTCCCCTTGTCCCGAAGCGGCCATATCATGCAATCTACTTACGGAGCATTGCTGTTAACGGGAAAATTTTGCCGATTGATCCATTAGCGTTTACAGTATCACATGGGCGAGGAACTGTTGTGGACTCGGGAACTACTCTAGCATATCTTATAGAAGAATTATATGAACCTTTTATACATGCTGTAATTCGAGATCCATTAGTTCTTTTATACGAAAGGGTACAGTAA

Protein Analysis

200

Amino Acids

21.54

Weight (kDa)

6.99

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 182
AciI CCGC 3 cut(s) 6, 60, 391
AclWI GGATC 2 cut(s) 446, 560
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 1 cut(s) 438
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 2 cut(s) 169, 594
AgeI ACCGGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 307
AhlI ACTAGT 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 2 cut(s) 446, 560
Ama87I CYCGRG 2 cut(s) 201, 499
Aor13HI TCCGGA 1 cut(s) 182
AoxI GGCC 1 cut(s) 392
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 438
AsiGI ACCGGT 1 cut(s) 30
AspS9I GGNCC 2 cut(s) 198, 239
AsuHPI GGTGA 1 cut(s) 356
AvaI CYCGRG 2 cut(s) 201, 499
AvaII GGWCC 2 cut(s) 198, 239
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BauI CACGAG 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 84
BciVI GTATCC 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 86
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 2 cut(s) 75, 512
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 3 cut(s) 7, 98, 392
BlsI GCNGC 3 cut(s) 8, 99, 393
Bme18I GGWCC 2 cut(s) 198, 239
BmeT110I CYCGRG 2 cut(s) 201, 499
BmgT120I GGNCC 2 cut(s) 198, 239
BmiI GGNNCC 4 cut(s) 199, 200, 241, 357
BmsI GCATC 2 cut(s) 78, 109
BpiI GAAGAC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 235
BsaWI WCCGGW 2 cut(s) 30, 182
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 420
BseAI TCCGGA 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 84
BseYI CCCAGC 2 cut(s) 194, 284
BshFI GGCC 1 cut(s) 394
BshTI ACCGGT 1 cut(s) 30
BsiHKCI CYCGRG 2 cut(s) 201, 499
BsiSI CCGG 3 cut(s) 31, 57, 183
BslFI GGGAC 3 cut(s) 211, 225, 368
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 3 cut(s) 211, 225, 368
BsnI GGCC 1 cut(s) 394
BsoBI CYCGRG 2 cut(s) 201, 499
Bsp13I TCCGGA 1 cut(s) 182
Bsp143I GATC 3 cut(s) 122, 451, 565
BspACI CCGC 3 cut(s) 6, 60, 391
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 1 cut(s) 221
BspEI TCCGGA 1 cut(s) 182
BspLI GGNNCC 4 cut(s) 199, 200, 241, 357
BspPI GGATC 2 cut(s) 446, 560
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 30
BsrI ACTGG 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 3 cut(s) 122, 451, 565
BssSI CACGAG 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 235
Bst2BI CACGAG 1 cut(s) 270
Bst4CI ACNGT 4 cut(s) 302, 469, 490, 597
BstDEI CTNAG 1 cut(s) 208
BstKTI GATC 3 cut(s) 125, 454, 568
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 3 cut(s) 122, 451, 565
BstMWI GCNNNNNNNGC 3 cut(s) 12, 33, 66
BstNSI RCATGY 1 cut(s) 554
BstV1I GCAGC 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 394
BtsIMutI CAGTG 2 cut(s) 123, 298
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 2 cut(s) 198, 239
Csp6I GTAC 2 cut(s) 168, 593
CspAI ACCGGT 1 cut(s) 30
CviAII CATG 4 cut(s) 244, 401, 476, 551
CviJI RGCY 7 cut(s) 27, 194, 206, 228, 234, 358, 394
CviKI_1 RGCY 7 cut(s) 27, 194, 206, 228, 234, 358, 394
CviQI GTAC 2 cut(s) 168, 593
DdeI CTNAG 1 cut(s) 208
DpnI GATC 3 cut(s) 124, 453, 567
DpnII GATC 3 cut(s) 122, 451, 565
EaeI YGGCCR 1 cut(s) 392
EciI GGCGGA 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 198, 239
Eco57I CTGAAG 1 cut(s) 129
Eco88I CYCGRG 2 cut(s) 201, 499
EcoO109I RGGNCCY 2 cut(s) 198, 239
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 4 cut(s) 247, 404, 479, 554
FaqI GGGAC 3 cut(s) 211, 225, 368
FatI CATG 4 cut(s) 243, 400, 475, 550
Fnu4HI GCNGC 3 cut(s) 7, 98, 392
Fsp4HI GCNGC 3 cut(s) 7, 98, 392
FspBI CTAG 2 cut(s) 75, 512
GluI GCNGC 3 cut(s) 7, 98, 392
GsaI CCCAGC 2 cut(s) 198, 288
HaeIII GGCC 1 cut(s) 394
HapII CCGG 3 cut(s) 31, 57, 183
Hin1II CATG 4 cut(s) 247, 404, 479, 554
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 3 cut(s) 140, 280, 497
HpaI GTTAAC 1 cut(s) 430
HpaII CCGG 3 cut(s) 31, 57, 183
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 4 cut(s) 168, 430, 465, 496
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 6 cut(s) 104, 183, 270, 385, 501, 563
Hpy8I GTNNAC 4 cut(s) 168, 430, 465, 496
HpyCH4III ACNGT 4 cut(s) 302, 469, 490, 597
HpyCH4V TGCA 4 cut(s) 36, 100, 134, 404
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 33, 66
HpyF3I CTNAG 1 cut(s) 208
Hsp92II CATG 4 cut(s) 247, 404, 479, 554
KflI GGGWCCC 1 cut(s) 198
Kpn2I TCCGGA 1 cut(s) 182
KspAI GTTAAC 1 cut(s) 430
Kzo9I GATC 3 cut(s) 122, 451, 565
LmnI GCTCC 2 cut(s) 355, 417
LpnPI CCDG 6 cut(s) 44, 70, 129, 180, 196, 298
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 2 cut(s) 78, 109
MaeI CTAG 2 cut(s) 75, 512
MaeIII GTNAC 1 cut(s) 344
MalI GATC 3 cut(s) 124, 453, 567
MboI GATC 3 cut(s) 122, 451, 565
MboII GAAGA 3 cut(s) 135, 258, 539
MflI RGATCY 1 cut(s) 565
MluCI AATT 3 cut(s) 438, 530, 558
MlyI GAGTC 2 cut(s) 274, 491
MnlI CCTC 3 cut(s) 217, 266, 476
MroI TCCGGA 1 cut(s) 182
MseI TTAA 1 cut(s) 429
MspI CCGG 3 cut(s) 31, 57, 183
MwoI GCNNNNNNNGC 3 cut(s) 12, 33, 66
NdeII GATC 3 cut(s) 122, 451, 565
NlaIII CATG 4 cut(s) 247, 404, 479, 554
NlaIV GGNNCC 4 cut(s) 199, 200, 241, 357
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 1 cut(s) 344
NspI RCATGY 1 cut(s) 554
PfeI GAWTC 1 cut(s) 140
PinAI ACCGGT 1 cut(s) 30
PkrI GCNGC 3 cut(s) 8, 99, 393
PleI GAGTC 2 cut(s) 274, 491
PpsI GAGTC 2 cut(s) 274, 491
PpuMI RGGWCCY 2 cut(s) 198, 239
Psp5II RGGWCCY 2 cut(s) 198, 239
PspFI CCCAGC 2 cut(s) 194, 284
PspN4I GGNNCC 4 cut(s) 199, 200, 241, 357
PspPI GGNCC 2 cut(s) 198, 239
PspPPI RGGWCCY 2 cut(s) 198, 239
PsrI GAACNNNNNNTAC 2 cut(s) 531, 563
PsuI RGATCY 1 cut(s) 565
RsaI GTAC 2 cut(s) 169, 594
RsaNI GTAC 2 cut(s) 168, 593
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 3 cut(s) 7, 98, 392
Sau3AI GATC 3 cut(s) 122, 451, 565
Sau96I GGNCC 2 cut(s) 198, 239
SchI GAGTC 2 cut(s) 274, 491
SetI ASST 2 cut(s) 241, 544
SfaNI GCATC 2 cut(s) 78, 109
SgrAI CRCCGGYG 1 cut(s) 30
SinI GGWCC 2 cut(s) 198, 239
SpeI ACTAGT 1 cut(s) 74
Sse9I AATT 3 cut(s) 438, 530, 558
SsiI CCGC 3 cut(s) 6, 60, 391
SspMI CTAG 2 cut(s) 75, 512
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 4 cut(s) 302, 469, 490, 597
TaqI TCGA 1 cut(s) 562
TasI AATT 3 cut(s) 438, 530, 558
TauI GCSGC 2 cut(s) 9, 394
TfiI GAWTC 1 cut(s) 140
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 2 cut(s) 123, 305
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 1 cut(s) 552
TspGWI ACGGA 1 cut(s) 430
TspRI CASTG 2 cut(s) 123, 305
VpaK11BI GGWCC 2 cut(s) 198, 239
XapI RAATTY 1 cut(s) 438
XceI RCATGY 1 cut(s) 554
XspI CTAG 2 cut(s) 75, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.