Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003711

Physical Location & Seq

Genomic Coordinates Forward (+)

5913970 .. 5914364

Gene Structure 395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAACTTTGTATCGTTTCAGAATGGTGTTACTACTTGGGAGATTGCATTTCAGAAATCTCAGGGACCGGTCACAATCTTTGGAGATATTATTCTGAAAGATAAGATAATCGAATACGATTTAGCACGACAGCGCTTGGGATGGCCAACCCGAGATTGTTCCTTGCCTATGGATGGATGTGAACGTAAGTTTTGGCAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

68

Amino Acids

7.85

Weight (kDa)

7.77

Isoelectric Point (pI)

24.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36670 AT2G36670 AT2G36670 AT2G36670
fragaria_vesca	FvH4_6g17290 FvH4_6g17290
malus_domestica	MD09G1292800.v1.1 MD12G1102500.v1.1 MD14G1096400.v1.1 MD16G1113800.v1.1 MD17G1282200.v1.1 MD17G1282300.v1.1 MD17G1282800.v1.1 MD17G1283200.v1.1
prunus_persica	Prupe.7G007000_v2.0.a1 Prupe.7G007500_v2.0.a1 Prupe.7G122500_v2.0.a1 Prupe.7G122500_v2.0.a1
pyrus_communis	pycom06g08820 pycom09g07760 pycom09g19650 pycom12g10050 pycom14g09440 pycom16g09750 pycom17g27920
rosa_chinensis	RchiOBHm_Chr3g0471401
rosa_laevigata	RLG00000024180
rosa_roxburghii	Rroxscaffold_6G00409970
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh3AG167400 Rh3BG192900 Rh3CG183300 Rh3DG182600
rosa_wichuraiana	Rw3G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	143
AfeI	AGCGCT	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgeI	ACCGGT	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	150
Aor51HI	AGCGCT	1 cut(s)	134
AoxI	GGCC	1 cut(s)	143
AsiGI	ACCGGT	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	145
BccI	CCATC	2 cut(s)	135, 167
BfoI	RGCGCY	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	67
BseGI	GGATG	3 cut(s)	146, 178, 182
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	145
BshTI	ACCGGT	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	150
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	67
BssAI	RCCGGY	1 cut(s)	67
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	3 cut(s)	146, 178, 182
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	3 cut(s)	146, 178, 182
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	65
CspAI	ACCGGT	1 cut(s)	67
CviJI	RGCY	1 cut(s)	145
CviKI_1	RGCY	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	60
EaeI	YGGCCR	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	65
Eco47III	AGCGCT	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	150
FaiI	YATR	1 cut(s)	170
FaqI	GGGAC	1 cut(s)	78
FokI	GGATG	3 cut(s)	153, 185, 189
GlaI	GCGC	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	1 cut(s)	68
HhaI	GCGC	1 cut(s)	135
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HpaII	CCGG	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	182
Hpy188I	TCNGA	3 cut(s)	21, 54, 96
Hpy8I	GTNNAC	1 cut(s)	182
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	184
HspAI	GCGC	1 cut(s)	133
LpnPI	CCDG	2 cut(s)	47, 81
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	2 cut(s)	28, 70
MlsI	TGGCCA	1 cut(s)	145
MluNI	TGGCCA	1 cut(s)	145
Mox20I	TGGCCA	1 cut(s)	145
MscI	TGGCCA	1 cut(s)	145
Msp20I	TGGCCA	1 cut(s)	145
MspI	CCGG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	70
PinAI	ACCGGT	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	65
Sau96I	GGNCC	1 cut(s)	65
SetI	ASST	1 cut(s)	187
SgeI	CNNG	8 cut(s)	48, 74, 80, 138, 148, 162, 164, 175
SinI	GGWCC	1 cut(s)	65
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.