Rroxscaffold_6G00409970

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
32450240 .. 32455966
5727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409970.1

Sequence Viewer

Length: 1386 bp
ATGCGGGCCTCTCTTGCCCCGATCTTGGCCCTCCTCGCCCTCCTAACCTCCCCTCTCTCTCCCTTCCGCCGCCACCGCCACCACGGCCGCCGCCGCCACTTTTCTGTCTCTCCACAGAGCCTTCCCGCCGACCCACCACCGCGTCCAACTCGACCGCCTCCGCGCGCGCTTTATTTTACAAAAGTAAAATTGGGCTCTCCACCAAAAGAGTACAATGTGCAGATCGATACCGGAAGCGACATCTTGTGGATTACCTGCAATTCCTGCAGTAATTGCCCCCAGACTAGTGGACTTGGGATTCAGCTCAATTTATATGATTCTGGCAGCTCCTCAACTGCAGGGCAGATCTCCTGTTCAGATCCAATATGCAGTTCTGCGGTTCAAACTTCAGCAACAGAGTGCTCTGAGAGTAACCAGTGCAGTTACACTTTCCAATATGGCGATGGAAGTGGGACATCTGGTGTCTATGTATCAGATGCACTATATTTCGACATGATTCTGGGGCAGTCTTTTATGGCCAACTCTTCAGCTGCCATCGTGTTCGGGTGTAGTACCTATCAGTCTGGGGATTTGACCAAGACAGATAAAGCGGTGGATGGGATATTTGGGTTCGGCCAAGGGGCATTGTCTGTTATATCCCAGTTGTCATATCGAGGGATAACTCCCAAAGTATTTTCCCATTGTTTGAAGGGAGATGGCAATGGTGGGGGTATACTTGTTCTTGGTGAGATTTTGGAGCCAAGTATCGTGTATAGTCCCCTCGTTCCATCACACATTGCTGTCAATGGGCAACTCTTACCAATTGATCCAATAGCCTTCACCACATCAAACAGCCGGGGAACTATTGTTGACTCAGGCACAACTTTGACATACCTTGTGGAGGAAGCTTATGATCCTTTTGTCAGTGCTATAACGTCAGCTGTTTCACAATCTGCAACTCCCCTCATTTCAAAAGGAAACCAGTGTTATCTGGTCTCCAACAGTTTGGCTGAGGTGTTTCCTCCCGTTAGTCTAAACTTCGCAGCTGGTGCATCGATGGTGTTGAAACCAGAAGAGTACCTTGTACATACGGGTTTCGTTGAAGGTGCTGCTATGTGGTGCATTGGCTTTCAGAAGGTTCAGGGAGGGGTGACAATTTTAGGAGATCTTGTTCTAAAAGATAAGATATTTGTGTATGATTTGGCTCACCAACGCATTGGATGGGCCAACTACGATTGCTCATTATCCGTAAATGTTTCAGTAACTACTAGCAAAGACGAATTTATCAATGCAGGACAGCTGAGTAAGAGCAACTCATCAAGAGACACGCTTTTCAAGCTGCTGACAACAGGGATTATGGTTATCTTACTGCACGTATTGGTGTTAGCGGACTTCCATCTTCTGTAG

Protein Analysis

461

Amino Acids

49.2

Weight (kDa)

6.05

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 58 - 242 1.1e-41 Xylanase inhibitor N-terminal
Asp PF00026 58 - 403 1.7e-26 Eukaryotic aspartyl protease
TAXi_C PF14541 258 - 402 3.2e-22 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 263
AccI GTMKAC 1 cut(s) 712
AccII CGCG 4 cut(s) 142, 163, 165, 167
AclWI GGATC 3 cut(s) 353, 800, 887
AcoI YGGCCR 3 cut(s) 85, 516, 613
AcsI RAATTY 1 cut(s) 1259
AcuI CTGAAG 2 cut(s) 372, 510
AfaI GTAC 4 cut(s) 212, 553, 1058, 1065
AfiI CCNNNNNNNGG 2 cut(s) 25, 880
AgsI TTSAA 6 cut(s) 383, 688, 951, 1045, 1082, 1315
AhlI ACTAGT 1 cut(s) 284
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AloI GAACNNNNNNTCC 2 cut(s) 1134, 1166
AluBI AGCT 8 cut(s) 304, 327, 530, 887, 920, 1025, 1279, 1318
AluI AGCT 8 cut(s) 304, 327, 530, 887, 920, 1025, 1279, 1318
Alw21I GWGCWC 1 cut(s) 404
Alw26I GTCTC 3 cut(s) 112, 979, 1296
AlwI GGATC 3 cut(s) 353, 800, 887
AoxI GGCC 6 cut(s) 6, 27, 85, 516, 613, 1203
ApeKI GCWGC 5 cut(s) 324, 530, 1022, 1088, 1318
ApoI RAATTY 1 cut(s) 1259
AspLEI GCGC 3 cut(s) 165, 167, 169
AspS9I GGNCC 3 cut(s) 6, 28, 1203
AsuC2I CCSGG 1 cut(s) 836
AsuHPI GGTGA 4 cut(s) 737, 811, 1141, 1178
BalI TGGCCA 1 cut(s) 518
BanII GRGCYC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 404
BbvCI CCTCAGC 1 cut(s) 990
BbvI GCAGC 5 cut(s) 336, 517, 1034, 1075, 1305
BccI CCATC 8 cut(s) 437, 542, 590, 689, 775, 1030, 1194, 1383
BceAI ACGGC 1 cut(s) 100
BcnI CCSGG 1 cut(s) 836
BcoDI GTCTC 3 cut(s) 112, 979, 1296
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 2 cut(s) 285, 1248
BfmI CTRYAG 3 cut(s) 265, 336, 1382
BfuAI ACCTGC 1 cut(s) 263
BglI GCCNNNNNGGC 1 cut(s) 84
BglII AGATCT 2 cut(s) 345, 1144
BisI GCNGC 9 cut(s) 70, 88, 91, 94, 325, 531, 1023, 1089, 1319
BlsI GCNGC 9 cut(s) 71, 89, 92, 95, 326, 532, 1024, 1090, 1320
Bme1390I CCNGG 1 cut(s) 836
BmgT120I GGNCC 3 cut(s) 6, 28, 1203
BmiI GGNNCC 1 cut(s) 738
BmrFI CCNGG 1 cut(s) 836
BmrI ACTGGG 1 cut(s) 634
BmsI GCATC 2 cut(s) 466, 1040
BmuI ACTGGG 1 cut(s) 634
Bpu10I CCTNAGC 1 cut(s) 990
BpuMI CCSGG 1 cut(s) 836
Bsa29I ATCGAT 2 cut(s) 225, 1034
BsaAI YACGTR 1 cut(s) 1354
BsaI GGTCTC 1 cut(s) 979
BsaJI CCNNGG 3 cut(s) 82, 616, 835
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 1134, 1164
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 880
Bse1I ACTGG 3 cut(s) 415, 640, 961
Bse3DI GCAATG 2 cut(s) 706, 774
BseCI ATCGAT 2 cut(s) 225, 1034
BseDI CCNNGG 3 cut(s) 82, 616, 835
BseGI GGATG 2 cut(s) 601, 1205
BseLI CCNNNNNNNGG 2 cut(s) 25, 880
BseMI GCAATG 2 cut(s) 706, 774
BseMII CTCAG 4 cut(s) 396, 867, 981, 1271
BseNI ACTGG 3 cut(s) 415, 640, 961
BsePI GCGCGC 2 cut(s) 163, 165
BseRI GAGGAG 2 cut(s) 23, 319
BseX3I CGGCCG 1 cut(s) 85
BseXI GCAGC 5 cut(s) 336, 517, 1034, 1075, 1305
BsgI GTGCAG 3 cut(s) 239, 439, 1334
Bsh1236I CGCG 4 cut(s) 142, 163, 165, 167
Bsh1285I CGRYCG 2 cut(s) 88, 155
BshFI GGCC 6 cut(s) 8, 29, 87, 518, 615, 1205
BshVI ATCGAT 2 cut(s) 225, 1034
BsiEI CGRYCG 2 cut(s) 88, 155
BsiHKAI GWGCWC 1 cut(s) 404
BsiSI CCGG 2 cut(s) 231, 835
BslFI GGGAC 2 cut(s) 466, 741
BslI CCNNNNNNNGG 2 cut(s) 25, 880
BsmAI GTCTC 3 cut(s) 112, 979, 1296
BsmFI GGGAC 2 cut(s) 466, 741
BsnI GGCC 6 cut(s) 8, 29, 87, 518, 615, 1205
Bso31I GGTCTC 1 cut(s) 979
Bsp1286I GDGCHC 2 cut(s) 197, 404
Bsp1407I TGTACA 1 cut(s) 1063
Bsp143I GATC 7 cut(s) 21, 222, 345, 358, 805, 892, 1144
BspANI GGCC 6 cut(s) 8, 29, 87, 518, 615, 1205
BspCNI CTCAG 4 cut(s) 397, 866, 982, 1272
BspDI ATCGAT 2 cut(s) 225, 1034
BspFNI CGCG 4 cut(s) 142, 163, 165, 167
BspLI GGNNCC 1 cut(s) 738
BspMAI CTGCAG 2 cut(s) 269, 340
BspMI ACCTGC 1 cut(s) 263
BspPI GGATC 3 cut(s) 353, 800, 887
BspTNI GGTCTC 1 cut(s) 979
BsrDI GCAATG 2 cut(s) 706, 774
BsrGI TGTACA 1 cut(s) 1063
BsrI ACTGG 3 cut(s) 415, 640, 961
BssECI CCNNGG 3 cut(s) 82, 616, 835
BssHII GCGCGC 2 cut(s) 163, 165
BssMI GATC 7 cut(s) 21, 222, 345, 358, 805, 892, 1144
BssNAI GTATAC 1 cut(s) 713
BssT1I CCWWGG 1 cut(s) 616
Bst1107I GTATAC 1 cut(s) 713
Bst4CI ACNGT 1 cut(s) 983
Bst6I CTCTTC 2 cut(s) 529, 1047
BstAPI GCANNNNNTGC 3 cut(s) 264, 273, 1028
BstAUI TGTACA 1 cut(s) 1063
BstBAI YACGTR 1 cut(s) 1354
BstC8I GCNNGC 3 cut(s) 6, 165, 167
BstDEI CTNAG 4 cut(s) 405, 853, 990, 1280
BstDSI CCRYGG 1 cut(s) 82
BstENI CCTNNNNNAGG 1 cut(s) 878
BstF5I GGATG 2 cut(s) 601, 1205
BstFNI CGCG 4 cut(s) 142, 163, 165, 167
BstHHI GCGC 3 cut(s) 165, 167, 169
BstKTI GATC 7 cut(s) 24, 225, 348, 361, 808, 895, 1147
BstMAI GTCTC 3 cut(s) 112, 979, 1296
BstMBI GATC 7 cut(s) 21, 222, 345, 358, 805, 892, 1144
BstMCI CGRYCG 2 cut(s) 88, 155
BstMWI GCNNNNNNNGC 9 cut(s) 14, 35, 75, 84, 93, 264, 273, 1028, 1315
BstSCI CCNGG 1 cut(s) 834
BstSFI CTRYAG 3 cut(s) 265, 336, 1382
BstUI CGCG 4 cut(s) 142, 163, 165, 167
BstV1I GCAGC 5 cut(s) 336, 517, 1034, 1075, 1305
BstX2I RGATCY 3 cut(s) 345, 358, 1144
BstXI CCANNNNNNTGG 3 cut(s) 287, 985, 1196
BstYI RGATCY 3 cut(s) 345, 358, 1144
BstZ17I GTATAC 1 cut(s) 713
BstZI CGGCCG 1 cut(s) 85
Bsu15I ATCGAT 2 cut(s) 225, 1034
BsuRI GGCC 6 cut(s) 8, 29, 87, 518, 615, 1205
BsuTUI ATCGAT 2 cut(s) 225, 1034
BtgI CCRYGG 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 456
BtsCI GGATG 2 cut(s) 601, 1205
BtsIMutI CAGTG 3 cut(s) 422, 910, 968
BveI ACCTGC 1 cut(s) 263
Cac8I GCNNGC 3 cut(s) 6, 165, 167
CfoI GCGC 3 cut(s) 165, 167, 169
Cfr13I GGNCC 3 cut(s) 6, 28, 1203
ClaI ATCGAT 2 cut(s) 225, 1034
CseI GACGC 1 cut(s) 131
Csp6I GTAC 4 cut(s) 211, 552, 1057, 1064
CviAII CATG 1 cut(s) 493
CviQI GTAC 4 cut(s) 211, 552, 1057, 1064
DdeI CTNAG 4 cut(s) 405, 853, 990, 1280
DpnI GATC 7 cut(s) 23, 224, 347, 360, 807, 894, 1146
DpnII GATC 7 cut(s) 21, 222, 345, 358, 805, 892, 1144
EaeI YGGCCR 3 cut(s) 85, 516, 613
EagI CGGCCG 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 529, 1047
EarI CTCTTC 2 cut(s) 529, 1047
EciI GGCGGA 1 cut(s) 56
EclXI CGGCCG 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 197
Eco31I GGTCTC 1 cut(s) 979
Eco52I CGGCCG 1 cut(s) 85
Eco57I CTGAAG 2 cut(s) 372, 510
EcoNI CCTNNNNNAGG 1 cut(s) 878
EcoT14I CCWWGG 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 1 cut(s) 496
FalI AAGNNNNNCTT 2 cut(s) 1044, 1076
FaqI GGGAC 2 cut(s) 466, 741
FatI CATG 1 cut(s) 492
FauI CCCGC 1 cut(s) 133
FblI GTMKAC 1 cut(s) 712
Fnu4HI GCNGC 9 cut(s) 70, 88, 91, 94, 325, 531, 1023, 1089, 1319
FokI GGATG 2 cut(s) 608, 1212
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 9 cut(s) 70, 88, 91, 94, 325, 531, 1023, 1089, 1319
FspBI CTAG 2 cut(s) 285, 1248
GlaI GCGC 3 cut(s) 164, 166, 168
GluI GCNGC 9 cut(s) 70, 88, 91, 94, 325, 531, 1023, 1089, 1319
HaeIII GGCC 6 cut(s) 8, 29, 87, 518, 615, 1205
HapII CCGG 2 cut(s) 231, 835
HgaI GACGC 1 cut(s) 131
HhaI GCGC 3 cut(s) 165, 167, 169
Hin1II CATG 1 cut(s) 496
Hin6I GCGC 3 cut(s) 163, 165, 167
HinP1I GCGC 3 cut(s) 163, 165, 167
HincII GTYRAC 1 cut(s) 850
HindII GTYRAC 1 cut(s) 850
HindIII AAGCTT 1 cut(s) 885
HinfI GANTC 4 cut(s) 298, 317, 496, 851
HpaII CCGG 2 cut(s) 231, 835
HphI GGTGA 4 cut(s) 737, 811, 1141, 1178
Hpy166II GTNNAC 3 cut(s) 290, 713, 850
Hpy188I TCNGA 4 cut(s) 358, 406, 475, 1113
Hpy188III TCNNGA 1 cut(s) 1299
Hpy8I GTNNAC 3 cut(s) 290, 713, 850
HpyAV CCTTC 6 cut(s) 73, 131, 682, 826, 1076, 1108
HpyCH4III ACNGT 1 cut(s) 983
HpyCH4IV ACGT 2 cut(s) 914, 1353
HpyF10VI GCNNNNNNNGC 9 cut(s) 14, 35, 75, 84, 93, 264, 273, 1028, 1315
HpyF3I CTNAG 4 cut(s) 405, 853, 990, 1280
HpySE526I ACGT 2 cut(s) 914, 1353
Hsp92II CATG 1 cut(s) 496
HspAI GCGC 3 cut(s) 163, 165, 167
Kzo9I GATC 7 cut(s) 21, 222, 345, 358, 805, 892, 1144
LmnI GCTCC 2 cut(s) 332, 736
Lsp1109I GCAGC 5 cut(s) 336, 517, 1034, 1075, 1305
LweI GCATC 2 cut(s) 466, 1040
MaeI CTAG 2 cut(s) 285, 1248
MaeII ACGT 2 cut(s) 914, 1353
MaeIII GTNAC 4 cut(s) 410, 422, 1129, 1240
MalI GATC 7 cut(s) 23, 224, 347, 360, 807, 894, 1146
MauBI CGCGCGCG 1 cut(s) 163
MboI GATC 7 cut(s) 21, 222, 345, 358, 805, 892, 1144
MboII GAAGA 3 cut(s) 516, 1064, 1370
MfeI CAATTG 1 cut(s) 801
MflI RGATCY 3 cut(s) 345, 358, 1144
MhlI GDGCHC 2 cut(s) 197, 404
MlsI TGGCCA 1 cut(s) 518
MluCI AATT 7 cut(s) 188, 259, 271, 307, 801, 1134, 1259
MluNI TGGCCA 1 cut(s) 518
MlyI GAGTC 1 cut(s) 845
MmeI TCCRAC 2 cut(s) 170, 1002
Mox20I TGGCCA 1 cut(s) 518
MscI TGGCCA 1 cut(s) 518
Msp20I TGGCCA 1 cut(s) 518
MspA1I CMGCKG 4 cut(s) 530, 920, 1025, 1279
MspI CCGG 2 cut(s) 231, 835
MspR9I CCNGG 1 cut(s) 836
MunI CAATTG 1 cut(s) 801
MvnI CGCG 4 cut(s) 142, 163, 165, 167
MwoI GCNNNNNNNGC 9 cut(s) 14, 35, 75, 84, 93, 264, 273, 1028, 1315
NciI CCSGG 1 cut(s) 836
NdeII GATC 7 cut(s) 21, 222, 345, 358, 805, 892, 1144
NlaIII CATG 1 cut(s) 496
NlaIV GGNNCC 1 cut(s) 738
NmuCI GTSAC 1 cut(s) 1129
PauI GCGCGC 2 cut(s) 163, 165
PfeI GAWTC 3 cut(s) 298, 317, 496
PkrI GCNGC 9 cut(s) 71, 89, 92, 95, 326, 532, 1024, 1090, 1320
PleI GAGTC 1 cut(s) 845
PpsI GAGTC 1 cut(s) 845
Ppu21I YACGTR 1 cut(s) 1354
PspN4I GGNNCC 1 cut(s) 738
PspPI GGNCC 3 cut(s) 6, 28, 1203
PstI CTGCAG 2 cut(s) 269, 340
PsuI RGATCY 3 cut(s) 345, 358, 1144
PteI GCGCGC 2 cut(s) 163, 165
PvuII CAGCTG 4 cut(s) 530, 920, 1025, 1279
RsaI GTAC 4 cut(s) 212, 553, 1058, 1065
RsaNI GTAC 4 cut(s) 211, 552, 1057, 1064
SatI GCNGC 9 cut(s) 70, 88, 91, 94, 325, 531, 1023, 1089, 1319
Sau3AI GATC 7 cut(s) 21, 222, 345, 358, 805, 892, 1144
Sau96I GGNCC 3 cut(s) 6, 28, 1203
SchI GAGTC 1 cut(s) 845
ScrFI CCNGG 1 cut(s) 836
SduI GDGCHC 2 cut(s) 197, 404
SfaNI GCATC 2 cut(s) 466, 1040
SfcI CTRYAG 3 cut(s) 265, 336, 1382
SpeI ACTAGT 1 cut(s) 284
Sse9I AATT 7 cut(s) 188, 259, 271, 307, 801, 1134, 1259
SspMI CTAG 2 cut(s) 285, 1248
StyD4I CCNGG 1 cut(s) 834
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 1 cut(s) 983
TaiI ACGT 2 cut(s) 917, 1356
TaqI TCGA 5 cut(s) 151, 225, 489, 652, 1034
TasI AATT 7 cut(s) 188, 259, 271, 307, 801, 1134, 1259
TatI WGTACW 2 cut(s) 210, 1063
TauI GCSGC 4 cut(s) 72, 90, 93, 96
TfiI GAWTC 3 cut(s) 298, 317, 496
TscAI CASTG 3 cut(s) 422, 910, 968
TseFI GTSAC 1 cut(s) 1129
TseI GCWGC 5 cut(s) 324, 530, 1022, 1088, 1318
Tsp45I GTSAC 1 cut(s) 1129
TspGWI ACGGA 1 cut(s) 1216
TspRI CASTG 3 cut(s) 422, 910, 968
XagI CCTNNNNNAGG 1 cut(s) 878
XapI RAATTY 1 cut(s) 1259
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 712
XspI CTAG 2 cut(s) 285, 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.