Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003711

Physical Location & Seq

Genomic Coordinates Forward (+)

15494297 .. 15500367

Gene Structure 6071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG167400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATTCTGGAGCAGTCTTTTATGGCCAACTCTTCAGCTGCCATCGTTTTCGGGTGTAGTACCTATCAGTCTGGGGATTTGACCAAGACAGATAAAGCGGTGGATGGGATATTTGGGTTCGGCCAAGGGGCATTGTCTGTTATATCCCAGTTGTCATATCGAGGGATAACTCCCAAAGTATTTTCCCATTGTTTGAAGGGAGATGGCAATGGTGGGGGTATACTTGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCCCTCGTTCCATCACAGCCTCATTATAATTTAAATCTTCAGAGCATTGCTGTCAATGGGCAACTCTTACCAATTGATCCAATAGCCTTCACCACATCAAACAGCCGGGGAACTATTGTTGACTCAGGCACAACTTTGACATACCTTGTGGAGGAAGCTTATGATCCTTTTGTCAGTGCTATAACATCGGCTGTTTCACAATCTGCAACTCCCCTTATTTCAAAAGGAAACCAGTGTTATCTAGTCTCCAACAGTTTGGCTGAGGTGTTTCCTCCCGTTAGTCTAAACTTCGCAGCTGGTGCATCGATGGTGTTGAAACCAGAAGAGTACCTTGTACATACGGGTTTCATTGTAAGTCGTTCCTCTTGCTCCTTCTGGATAGGTGTCTTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

219

Amino Acids

23.1

Weight (kDa)

4.86

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	12 - 78	3.6e-14	Xylanase inhibitor N-terminal
Asp	PF00026	16 - 213	1.9e-10	Eukaryotic aspartyl protease
TAXi_C	PF14541	96 - 201	1.1e-17	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36670 AT2G36670 AT2G36670 AT2G36670
fragaria_vesca	FvH4_6g17290 FvH4_6g17290
malus_domestica	MD09G1292800.v1.1 MD12G1102500.v1.1 MD14G1096400.v1.1 MD16G1113800.v1.1 MD17G1282200.v1.1 MD17G1282300.v1.1 MD17G1282800.v1.1 MD17G1283200.v1.1
prunus_persica	Prupe.7G007000_v2.0.a1 Prupe.7G007500_v2.0.a1 Prupe.7G122500_v2.0.a1 Prupe.7G122500_v2.0.a1
pyrus_communis	pycom06g08820 pycom09g07760 pycom09g19650 pycom12g10050 pycom14g09440 pycom16g09750 pycom17g27920
rosa_chinensis	RchiOBHm_Chr3g0471401
rosa_laevigata	RLG00000024180
rosa_roxburghii	Rroxscaffold_6G00409970
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh3AG167400 Rh3BG192900 Rh3CG183300 Rh3DG182600
rosa_wichuraiana	Rw3G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	220
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	2 cut(s)	335, 422
AcoI	YGGCCR	2 cut(s)	24, 121
AcuI	CTGAAG	2 cut(s)	18, 287
AfaI	GTAC	3 cut(s)	61, 593, 600
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	196, 486, 580
AluBI	AGCT	3 cut(s)	38, 422, 560
AluI	AGCT	3 cut(s)	38, 422, 560
Alw26I	GTCTC	1 cut(s)	514
AlwI	GGATC	2 cut(s)	335, 422
AoxI	GGCC	2 cut(s)	24, 121
ApeKI	GCWGC	2 cut(s)	38, 557
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	245, 346
BalI	TGGCCA	1 cut(s)	26
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	2 cut(s)	25, 569
BccI	CCATC	5 cut(s)	50, 98, 197, 283, 565
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	514
BfaI	CTAG	1 cut(s)	506
BisI	GCNGC	2 cut(s)	39, 558
BlsI	GCNGC	2 cut(s)	40, 559
Bme1390I	CCNGG	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	575
BmuI	ACTGGG	1 cut(s)	142
BpmI	CTGGAG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	124, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	148, 496
Bse3DI	GCAATG	2 cut(s)	214, 309
BseCI	ATCGAT	1 cut(s)	569
BseDI	CCNNGG	2 cut(s)	124, 370
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	2 cut(s)	214, 309
BseMII	CTCAG	2 cut(s)	402, 516
BseNI	ACTGG	2 cut(s)	148, 496
BseXI	GCAGC	2 cut(s)	25, 569
BshFI	GGCC	2 cut(s)	26, 123
BshVI	ATCGAT	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	514
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	26, 123
Bsp1407I	TGTACA	1 cut(s)	598
Bsp143I	GATC	2 cut(s)	340, 427
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	2 cut(s)	26, 123
BspCNI	CTCAG	2 cut(s)	401, 517
BspDI	ATCGAT	1 cut(s)	569
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	2 cut(s)	335, 422
BsrDI	GCAATG	2 cut(s)	214, 309
BsrGI	TGTACA	1 cut(s)	598
BsrI	ACTGG	2 cut(s)	148, 496
BssECI	CCNNGG	2 cut(s)	124, 370
BssMI	GATC	2 cut(s)	340, 427
BssNAI	GTATAC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	124
Bst1107I	GTATAC	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	2 cut(s)	37, 582
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstAUI	TGTACA	1 cut(s)	598
BstDEI	CTNAG	3 cut(s)	388, 525, 652
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	2 cut(s)	343, 430
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	2 cut(s)	340, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	25, 569
BstXI	CCANNNNNNTGG	1 cut(s)	520
BstZ17I	GTATAC	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	569
BsuRI	GGCC	2 cut(s)	26, 123
BsuTUI	ATCGAT	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	445, 503
ClaI	ATCGAT	1 cut(s)	569
Csp6I	GTAC	3 cut(s)	60, 592, 599
CviQI	GTAC	3 cut(s)	60, 592, 599
DdeI	CTNAG	3 cut(s)	388, 525, 652
DpnI	GATC	2 cut(s)	342, 429
DpnII	GATC	2 cut(s)	340, 427
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	24, 121
Eam1104I	CTCTTC	2 cut(s)	37, 582
EarI	CTCTTC	2 cut(s)	37, 582
Eco130I	CCWWGG	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	18, 287
EcoNI	CCTNNNNNAGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FaqI	GGGAC	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	2 cut(s)	39, 558
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	39, 558
FspBI	CTAG	1 cut(s)	506
GluI	GCNGC	2 cut(s)	39, 558
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	26, 123
HapII	CCGG	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	2 cut(s)	4, 386
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	2 cut(s)	245, 346
Hpy166II	GTNNAC	2 cut(s)	221, 385
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	2 cut(s)	8, 640
Hpy8I	GTNNAC	2 cut(s)	221, 385
HpyAV	CCTTC	3 cut(s)	190, 361, 646
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4V	TGCA	2 cut(s)	470, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	3 cut(s)	388, 525, 652
Kzo9I	GATC	2 cut(s)	340, 427
LmnI	GCTCC	3 cut(s)	10, 244, 638
LpnPI	CCDG	8 cut(s)	57, 161, 375, 383, 509, 546, 597, 625
Lsp1109I	GCAGC	2 cut(s)	25, 569
LweI	GCATC	1 cut(s)	575
MaeI	CTAG	1 cut(s)	506
MalI	GATC	2 cut(s)	342, 429
MboI	GATC	2 cut(s)	340, 427
MboII	GAAGA	3 cut(s)	24, 293, 599
MfeI	CAATTG	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	2 cut(s)	292, 336
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	7 cut(s)	155, 278, 294, 409, 520, 546, 637
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	2 cut(s)	38, 560
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	563
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	2 cut(s)	340, 427
NlaIV	GGNNCC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	40, 559
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PsiI	TTATAA	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	246
PvuII	CAGCTG	2 cut(s)	38, 560
RsaI	GTAC	3 cut(s)	61, 593, 600
RsaNI	GTAC	3 cut(s)	60, 592, 599
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	2 cut(s)	39, 558
Sau3AI	GATC	2 cut(s)	340, 427
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	8 cut(s)	40, 65, 411, 424, 531, 562, 597, 649
SfaNI	GCATC	1 cut(s)	575
SmiI	ATTTAAAT	1 cut(s)	297
Sse9I	AATT	2 cut(s)	292, 336
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	124
SwaI	ATTTAAAT	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	518
TaqI	TCGA	2 cut(s)	160, 569
TasI	AATT	2 cut(s)	292, 336
TatI	WGTACW	1 cut(s)	598
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	2 cut(s)	445, 503
TseI	GCWGC	2 cut(s)	38, 557
TspDTI	ATGAA	1 cut(s)	601
TspRI	CASTG	2 cut(s)	445, 503
XagI	CCTNNNNNAGG	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.