Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003711

Physical Location & Seq

Genomic Coordinates Forward (+)

34216089 .. 34217421

Gene Structure 1333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1283200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTGGGTTTCATGCTCGTCATGCAAAGTTTGTCCCCGGCATACTGAGCTTGGCGGACTTTCGTTCAATTTCTACGACCCTGCCGACTCATCCACCGCTCGGCCAGTTCCTTGTTCCGACAAGTTGTGCAAAGCTTCTTTAGAGACCGAATGCTCACATCCGACAAAACAGTGCAGATATCATCTGAGATATGCAGACGAAGATGAGATAGCCGGGTATTACATGTCAGATGAAGTACATTTTGACATGATACTGGTTCAGTCTCATGTTAAAATTGAGTCTTCAGCGACCGTTGTTTTCGGGTGTAGTACCTCTGTGGCTGGGCTTTTGGGGGGGACTATAGCTTCAGTCAACGGAGTATTTGGATTCGGCCAAGGGCTAATGTCAGTTATATCACAGTTGTCCTCTCAAGGGGCAACTGCTAATGTGTTCTCCCATTGTTTGAAGGGCGATGACAATGGAGGTGGTATACTCGTTCTTGGTGAGATTTTAGAGCCAAGTATCGTTTATACCCCTCTTGTCCCGACAGTGTATGTCTCTCTTCTTAAAATTTATTTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

188

Amino Acids

20.09

Weight (kDa)

5.22

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	1 - 161	5.3e-31	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36670 AT2G36670 AT2G36670 AT2G36670
fragaria_vesca	FvH4_6g17290 FvH4_6g17290
malus_domestica	MD09G1292800.v1.1 MD12G1102500.v1.1 MD14G1096400.v1.1 MD16G1113800.v1.1 MD17G1282200.v1.1 MD17G1282300.v1.1 MD17G1282800.v1.1 MD17G1283200.v1.1
prunus_persica	Prupe.7G007000_v2.0.a1 Prupe.7G007500_v2.0.a1 Prupe.7G122500_v2.0.a1 Prupe.7G122500_v2.0.a1
pyrus_communis	pycom06g08820 pycom09g07760 pycom09g19650 pycom12g10050 pycom14g09440 pycom16g09750 pycom17g27920
rosa_chinensis	RchiOBHm_Chr3g0471401
rosa_laevigata	RLG00000024180
rosa_roxburghii	Rroxscaffold_6G00409970
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh3AG167400 Rh3BG192900 Rh3CG183300 Rh3DG182600
rosa_wichuraiana	Rw3G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	469
AciI	CCGC	2 cut(s)	54, 96
AcoI	YGGCCR	2 cut(s)	101, 370
AcsI	RAATTY	1 cut(s)	549
AcuI	CTGAAG	2 cut(s)	267, 330
AfaI	GTAC	2 cut(s)	237, 310
AfiI	CCNNNNNNNGG	2 cut(s)	99, 411
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	67, 445
AluBI	AGCT	3 cut(s)	49, 134, 344
AluI	AGCT	3 cut(s)	49, 134, 344
Alw26I	GTCTC	3 cut(s)	137, 267, 541
AoxI	GGCC	2 cut(s)	101, 370
ApoI	RAATTY	1 cut(s)	549
AsuC2I	CCSGG	2 cut(s)	37, 214
AsuHPI	GGTGA	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	273
BcnI	CCSGG	2 cut(s)	37, 214
BcoDI	GTCTC	3 cut(s)	137, 267, 541
BfmI	CTRYAG	1 cut(s)	339
Bme1390I	CCNGG	2 cut(s)	37, 214
BmrFI	CCNGG	2 cut(s)	37, 214
BpiI	GAAGAC	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	2 cut(s)	37, 214
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	35, 373
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 411
Bse1I	ACTGG	2 cut(s)	104, 258
BseDI	CCNNGG	2 cut(s)	35, 373
BseGI	GGATG	2 cut(s)	89, 157
BseLI	CCNNNNNNNGG	2 cut(s)	99, 411
BseMII	CTCAG	2 cut(s)	36, 176
BseNI	ACTGG	2 cut(s)	104, 258
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	103, 372
BsiEI	CGRYCG	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	37, 213
BslFI	GGGAC	3 cut(s)	18, 349, 506
BslI	CCNNNNNNNGG	2 cut(s)	99, 411
BsmAI	GTCTC	3 cut(s)	137, 267, 541
BsmFI	GGGAC	3 cut(s)	18, 349, 506
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	103, 372
Bso31I	GGTCTC	1 cut(s)	137
BspACI	CCGC	2 cut(s)	54, 96
BspANI	GGCC	2 cut(s)	103, 372
BspCNI	CTCAG	2 cut(s)	37, 177
BspTNI	GGTCTC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	104, 258
BssECI	CCNNGG	2 cut(s)	35, 373
BssNAI	GTATAC	1 cut(s)	470
BssT1I	CCWWGG	1 cut(s)	373
Bst1107I	GTATAC	1 cut(s)	470
Bst4CI	ACNGT	4 cut(s)	171, 292, 399, 529
Bst6I	CTCTTC	1 cut(s)	546
BstDEI	CTNAG	2 cut(s)	45, 185
BstF5I	GGATG	2 cut(s)	89, 157
BstMAI	GTCTC	3 cut(s)	137, 267, 541
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 46
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	35, 212
BstSFI	CTRYAG	1 cut(s)	339
BstV2I	GAAGAC	1 cut(s)	273
BstZ17I	GTATAC	1 cut(s)	470
BsuRI	GGCC	2 cut(s)	103, 372
BtgZI	GCGATG	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	89, 157
BtsIMutI	CAGTG	2 cut(s)	176, 534
Csp6I	GTAC	2 cut(s)	236, 309
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	5 cut(s)	12, 21, 223, 247, 266
CviQI	GTAC	2 cut(s)	236, 309
DdeI	CTNAG	2 cut(s)	45, 185
EaeI	YGGCCR	2 cut(s)	101, 370
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
EciI	GGCGGA	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	373
Eco31I	GGTCTC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	179
Eco57I	CTGAAG	2 cut(s)	267, 330
EcoRV	GATATC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	5 cut(s)	15, 24, 226, 250, 269
FaqI	GGGAC	3 cut(s)	18, 349, 506
FatI	CATG	5 cut(s)	11, 20, 222, 246, 265
FblI	GTMKAC	1 cut(s)	469
FokI	GGATG	2 cut(s)	76, 144
GsaI	CCCAGC	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	103, 372
HapII	CCGG	2 cut(s)	37, 213
Hin1II	CATG	5 cut(s)	15, 24, 226, 250, 269
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	3 cut(s)	86, 278, 366
HpaII	CCGG	2 cut(s)	37, 213
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	2 cut(s)	352, 470
Hpy188I	TCNGA	4 cut(s)	118, 162, 186, 229
Hpy188III	TCNNGA	1 cut(s)	523
Hpy8I	GTNNAC	2 cut(s)	352, 470
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	4 cut(s)	171, 292, 399, 529
HpyCH4V	TGCA	4 cut(s)	24, 129, 174, 194
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 46
HpyF3I	CTNAG	2 cut(s)	45, 185
Hsp92II	CATG	5 cut(s)	15, 24, 226, 250, 269
LpnPI	CCDG	6 cut(s)	50, 93, 117, 226, 239, 306
MbiI	CCGCTC	1 cut(s)	98
MboII	GAAGA	3 cut(s)	212, 273, 533
MluCI	AATT	3 cut(s)	67, 273, 549
MlyI	GAGTC	2 cut(s)	80, 287
MmeI	TCCRAC	2 cut(s)	141, 185
MnlI	CCTC	4 cut(s)	322, 415, 455, 525
MseI	TTAA	3 cut(s)	270, 546, 562
MspI	CCGG	2 cut(s)	37, 213
MspR9I	CCNGG	2 cut(s)	37, 214
Mva1269I	GAATGC	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	21, 46
NciI	CCSGG	2 cut(s)	37, 214
NlaIII	CATG	5 cut(s)	15, 24, 226, 250, 269
NmeAIII	GCCGAG	1 cut(s)	79
NspI	RCATGY	1 cut(s)	226
PciI	ACATGT	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	366
PleI	GAGTC	2 cut(s)	80, 286
PpsI	GAGTC	2 cut(s)	80, 286
PscI	ACATGT	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	320
RsaI	GTAC	2 cut(s)	237, 310
RsaNI	GTAC	2 cut(s)	236, 309
SaqAI	TTAA	3 cut(s)	270, 546, 562
SchI	GAGTC	2 cut(s)	80, 287
ScrFI	CCNGG	2 cut(s)	37, 214
SetI	ASST	5 cut(s)	51, 136, 314, 346, 466
SfcI	CTRYAG	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	3 cut(s)	67, 273, 549
SsiI	CCGC	2 cut(s)	54, 96
StyD4I	CCNGG	2 cut(s)	35, 212
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	4 cut(s)	171, 292, 399, 529
TaqII	GACCGA	1 cut(s)	161
TasI	AATT	3 cut(s)	67, 273, 549
TatI	WGTACW	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	366
Tru1I	TTAA	3 cut(s)	270, 546, 562
Tru9I	TTAA	3 cut(s)	270, 546, 562
TscAI	CASTG	2 cut(s)	176, 534
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	2 cut(s)	176, 534
XapI	RAATTY	1 cut(s)	549
XceI	RCATGY	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.