Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003711

Physical Location & Seq

Genomic Coordinates Reverse (-)

14004290 .. 14004787

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCAAGACTTTCTGCCAAGGAAATGCGTGGCTTCACCAAACTCAATGAAGACTTTTCTTCTTCCTGTATCGTCTTTGAATCTGGGTTTTTCTCCCACGGAATCAGCTCATTTCCCAACCCAAATATTCCTTCTTTCTTTAATTTCAGATGTATCTTCACAAAAATTCAACAACTATCGTTCTGGTTTGTTTCTGTGATTCTCTCCACGTTGTTTTCCGACGCGTCGGCAAACTTTGTTTTCTCCGTTGGCCACAAGTTCAACAACTCTACTTCTGCGGTGGATCTGCAACTCGACGGCAATGGCCATCCGTCCGAAATCATTACTTCACCAAGCCTGGGATTGGACCTGTGGACTAGGCCCGTTTCAAACGAGTCGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

128

Amino Acids

14.06

Weight (kDa)

5.82

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36670 AT2G36670 AT2G36670 AT2G36670
fragaria_vesca	FvH4_6g17290 FvH4_6g17290
malus_domestica	MD09G1292800.v1.1 MD12G1102500.v1.1 MD14G1096400.v1.1 MD16G1113800.v1.1 MD17G1282200.v1.1 MD17G1282300.v1.1 MD17G1282800.v1.1 MD17G1283200.v1.1
prunus_persica	Prupe.7G007000_v2.0.a1 Prupe.7G007500_v2.0.a1 Prupe.7G122500_v2.0.a1 Prupe.7G122500_v2.0.a1
pyrus_communis	pycom06g08820 pycom09g07760 pycom09g19650 pycom12g10050 pycom14g09440 pycom16g09750 pycom17g27920
rosa_chinensis	RchiOBHm_Chr3g0471401
rosa_laevigata	RLG00000024180
rosa_roxburghii	Rroxscaffold_6G00409970
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh3AG167400 Rh3BG192900 Rh3CG183300 Rh3DG182600
rosa_wichuraiana	Rw3G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	224
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	2 cut(s)	250, 304
AcsI	RAATTY	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	338, 343
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	4 cut(s)	80, 170, 262, 369
AjnI	CCWGG	1 cut(s)	336
AjuI	GAANNNNNNNTTGG	2 cut(s)	115, 147
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
AlwI	GGATC	1 cut(s)	291
AoxI	GGCC	3 cut(s)	250, 304, 359
ApoI	RAATTY	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	346, 360
AsuHPI	GGTGA	2 cut(s)	28, 321
AvaII	GGWCC	1 cut(s)	346
BalI	TGGCCA	2 cut(s)	252, 306
BbsI	GAAGAC	1 cut(s)	57
BccI	CCATC	1 cut(s)	315
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	338
BfaI	CTAG	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	338
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	346, 360
BmrFI	CCNGG	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	18, 97, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 343
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	338
BseDI	CCNNGG	3 cut(s)	18, 97, 337
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	338, 343
BseMI	GCAATG	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	3 cut(s)	252, 306, 361
BslI	CCNNNNNNNGG	2 cut(s)	338, 343
BsnI	GGCC	3 cut(s)	252, 306, 361
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	3 cut(s)	252, 306, 361
BspFNI	CGCG	1 cut(s)	224
BspPI	GGATC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	307
BssECI	CCNNGG	3 cut(s)	18, 97, 337
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	338
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	224
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstNI	CCWGG	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	336
BstUI	CGCG	1 cut(s)	224
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	3 cut(s)	252, 306, 361
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	307
Cfr13I	GGNCC	2 cut(s)	346, 360
CseI	GACGC	2 cut(s)	213, 230
CviJI	RGCY	6 cut(s)	33, 108, 252, 306, 336, 361
CviKI_1	RGCY	6 cut(s)	33, 108, 252, 306, 336, 361
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	2 cut(s)	250, 304
Eco130I	CCWWGG	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FokI	GGATG	1 cut(s)	294
FspBI	CTAG	1 cut(s)	357
HaeIII	GGCC	3 cut(s)	252, 306, 361
HgaI	GACGC	2 cut(s)	213, 230
HinfI	GANTC	4 cut(s)	80, 102, 199, 374
HphI	GGTGA	2 cut(s)	28, 321
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	3 cut(s)	149, 220, 316
Hpy188III	TCNNGA	1 cut(s)	6
Hpy8I	GTNNAC	1 cut(s)	354
Hpy99I	CGWCG	3 cut(s)	224, 229, 299
HpyAV	CCTTC	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	289
HpySE526I	ACGT	1 cut(s)	209
Kzo9I	GATC	1 cut(s)	283
LpnPI	CCDG	6 cut(s)	69, 79, 169, 323, 350, 362
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	209
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	4 cut(s)	51, 54, 62, 148
MflI	RGATCY	1 cut(s)	283
MlsI	TGGCCA	2 cut(s)	252, 306
MluCI	AATT	2 cut(s)	142, 165
MluI	ACGCGT	1 cut(s)	222
MluNI	TGGCCA	2 cut(s)	252, 306
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	243
Mox20I	TGGCCA	2 cut(s)	252, 306
MscI	TGGCCA	2 cut(s)	252, 306
MseI	TTAA	1 cut(s)	141
Msp20I	TGGCCA	2 cut(s)	252, 306
MspR9I	CCNGG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	338
MvnI	CGCG	1 cut(s)	224
NdeII	GATC	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	80, 102, 199
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	336
PspPI	GGNCC	2 cut(s)	346, 360
PsuI	RGATCY	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	2 cut(s)	346, 360
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	338
SetI	ASST	3 cut(s)	110, 212, 351
SinI	GGWCC	1 cut(s)	346
Sse9I	AATT	2 cut(s)	142, 165
SsiI	CCGC	1 cut(s)	278
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	336
StyI	CCWWGG	1 cut(s)	18
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	142, 165
TfiI	GAWTC	3 cut(s)	80, 102, 199
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	63
TspGWI	ACGGA	3 cut(s)	114, 235, 300
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	1 cut(s)	165
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.