RchiOBHm_Chr3g0471401

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
17272513 .. 17278487
5975 bp
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UTR
Exon/CDS
Intron
PRQ43714

Sequence Viewer

Length: 1512 bp
ATGCGGGCCTCTCTTGCCCCGATCTTGGCCCTCCTCGCCCTCCTAACCTCCCCCTCTCTCCTCCCTTCCGCCGCCGCCACCACCACCGCCGCCGCCGCCACTTTTCTGGCTCTCCACAGAGCCTTCCCGCCGACCCACCACCGCGTCCAACTCGACCGCCTCCGCGCGCGTGACCGAGCCCGCCACAGCCGCCTCCTCCAAAACGTCGTCGTCGGCGGCGTCGTCGACTTCTCAGTCGCCGGCTCCTCCGATCCCTACCTCGTCGGGCTTTATTTTACAAAAGTAAAATTGGGCTCTCCACCAAAAGAGTACAATGTGCAGATCGATACCGGAAGCGACATCTTGTGGATTACCTGCAATTCCTGCAGTAATTGCCCCCAGACTAGCGGACTTGGGATTCAGCTCAATTTATATGATTCTGGCAGCTCCTCAACTGCGGGGCAGATCTCCTGTTCAGATCCAATATGCAGTTCTGCGGTTCAAACTTCAGCAACAGAGTGCTCTGAGAGTAACCAGTGCAGTTACACTTTCCAATATGGCGATGGAAGTGGGACGTCTGGTGTCTATGTATCAGATGCACTATATTTCGACATGATTCTGGAGCAGTCTTTTATGGCCAACTCTTCAGCTGCCATCGTTTTCGGGTGTAGTACCTATCAGTCTGGGGATTTGACCAAGACAGATAAAGCGGTGGATGGGATATTTGGGTTCGGCCAAGGGGCATTGTCTGTTATATCCCAGTTGTCATATCGAGGGATAACTCCCAAAGTATTTTCCCATTGTTTGAAGGGAGATGGCAATGGTGGGGGTATACTTGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCCCTCGTTCCATCACAGCCTCATTATAATTTAAATCTTCAGAGCATTGCTGTCAATGGGCAACTCTTACCAATTGATCCAATAGCCTTCACCACATCAAACAGCCGGGGAACTATTGTTGACTCAGGCACAACTTTGACATACCTTGTGGAGGAAGCTTATGATCCTTTTGTCAGTGCTATAACATCGGCTGTTTCACAATCTGCAACTCCCCTTATTTCAAAAGGAAACCAGTGTTATCTAGTCTCCAACAGTTTGGCTGAGGTGTTTCCTCCCGTTAGTCTAAACTTCGCAGCTGGTGCATCGATGGTGTTGAAACCAGAAGAGTACCTTGTACATACGGGTTTCATTGAAGGTGCTGCTATGTGGTGCATTGGCTTTCAGAAGGTTCAGGGAGGGGTGACAATTTTAGGAGATCTTGTTCTAAAAGATAAGATATTTGTGTATGATTTGGCTCGCCAACGCGTTGGATGGGCCAACTATGATTGCTCATTATCCGTAAATGTCTCAGTAACTACTAGCAAAGACGAATTTATCAATGCAGGACAGCTGAGTAAGAGCAACGCATCAAGAGACACGCTTTTCAAGCTGCTGACAACAGGGATTATGGTTGTCTTGCTGCACGTATTGGTGTTAGTGGACTTCCATCTTCTGTAG

Protein Analysis

503

Amino Acids

53.45

Weight (kDa)

5.46

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 91 - 275 1.8e-41 Xylanase inhibitor N-terminal
Asp PF00026 91 - 445 2.5e-29 Eukaryotic aspartyl protease
TAXi_C PF14541 293 - 444 4.8e-25 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 882
AasI GACNNNNNNGTC 1 cut(s) 233
AatII GACGTC 1 cut(s) 557
Acc36I ACCTGC 1 cut(s) 362
AccI GTMKAC 2 cut(s) 225, 811
AccII CGCG 5 cut(s) 144, 165, 167, 169, 1320
AclWI GGATC 4 cut(s) 245, 452, 926, 1013
AcoI YGGCCR 2 cut(s) 615, 712
AcsI RAATTY 1 cut(s) 1385
AcuI CTGAAG 3 cut(s) 471, 609, 878
AcyI GRCGYC 2 cut(s) 219, 554
AfaI GTAC 4 cut(s) 311, 652, 1184, 1191
AfiI CCNNNNNNNGG 2 cut(s) 25, 1006
AflIII ACRYGT 1 cut(s) 1318
AgsI TTSAA 6 cut(s) 482, 787, 1077, 1171, 1208, 1441
AjuI GAANNNNNNNTTGG 2 cut(s) 454, 486
AloI GAACNNNNNNTCC 2 cut(s) 1260, 1292
AluBI AGCT 7 cut(s) 403, 426, 629, 1013, 1151, 1405, 1444
AluI AGCT 7 cut(s) 403, 426, 629, 1013, 1151, 1405, 1444
Alw21I GWGCWC 1 cut(s) 503
Alw26I GTCTC 3 cut(s) 1105, 1366, 1422
AlwI GGATC 4 cut(s) 245, 452, 926, 1013
AoxI GGCC 5 cut(s) 6, 27, 615, 712, 1329
ApeKI GCWGC 6 cut(s) 423, 629, 1148, 1214, 1444, 1474
ApoI RAATTY 1 cut(s) 1385
AspLEI GCGC 2 cut(s) 167, 169
AspS9I GGNCC 3 cut(s) 6, 28, 1329
AsuC2I CCSGG 1 cut(s) 962
AsuHPI GGTGA 3 cut(s) 836, 937, 1267
BalI TGGCCA 1 cut(s) 617
BanII GRGCYC 2 cut(s) 181, 296
Bbv12I GWGCWC 1 cut(s) 503
BbvCI CCTCAGC 1 cut(s) 1116
BbvI GCAGC 6 cut(s) 435, 616, 1160, 1201, 1431, 1461
BccI CCATC 8 cut(s) 536, 641, 689, 788, 874, 1156, 1320, 1509
BcnI CCSGG 1 cut(s) 962
BcoDI GTCTC 3 cut(s) 1105, 1366, 1422
BfaI CTAG 3 cut(s) 384, 1097, 1374
BfmI CTRYAG 2 cut(s) 364, 1508
BfuAI ACCTGC 1 cut(s) 362
BglII AGATCT 2 cut(s) 444, 1270
Bme1390I CCNGG 1 cut(s) 962
BmgT120I GGNCC 3 cut(s) 6, 28, 1329
BmiI GGNNCC 2 cut(s) 244, 837
BmrFI CCNGG 1 cut(s) 962
BmrI ACTGGG 1 cut(s) 733
BmsI GCATC 3 cut(s) 565, 1166, 1430
BmuI ACTGGG 1 cut(s) 733
BpmI CTGGAG 1 cut(s) 620
Bpu10I CCTNAGC 1 cut(s) 1116
BpuMI CCSGG 1 cut(s) 962
Bsa29I ATCGAT 2 cut(s) 324, 1160
BsaAI YACGTR 1 cut(s) 1480
BsaHI GRCGYC 2 cut(s) 219, 554
BsaJI CCNNGG 2 cut(s) 715, 961
BsaWI WCCGGW 1 cut(s) 329
BsaXI ACNNNNNCTCC 2 cut(s) 1260, 1290
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 1006
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 3 cut(s) 514, 739, 1087
Bse3DI GCAATG 2 cut(s) 805, 900
BseCI ATCGAT 2 cut(s) 324, 1160
BseDI CCNNGG 2 cut(s) 715, 961
BseGI GGATG 2 cut(s) 700, 1331
BseLI CCNNNNNNNGG 2 cut(s) 25, 1006
BseMI GCAATG 2 cut(s) 805, 900
BseMII CTCAG 6 cut(s) 246, 495, 993, 1107, 1377, 1397
BseNI ACTGG 3 cut(s) 514, 739, 1087
BsePI GCGCGC 1 cut(s) 165
BseRI GAGGAG 5 cut(s) 23, 50, 185, 235, 418
BseXI GCAGC 6 cut(s) 435, 616, 1160, 1201, 1431, 1461
BsgI GTGCAG 3 cut(s) 338, 538, 1460
Bsh1236I CGCG 5 cut(s) 144, 165, 167, 169, 1320
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 5 cut(s) 8, 29, 617, 714, 1331
BshVI ATCGAT 2 cut(s) 324, 1160
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 503
BsiSI CCGG 3 cut(s) 240, 330, 961
BslFI GGGAC 2 cut(s) 565, 840
BslI CCNNNNNNNGG 2 cut(s) 25, 1006
BsmAI GTCTC 3 cut(s) 1105, 1366, 1422
BsmFI GGGAC 2 cut(s) 565, 840
BsnI GGCC 5 cut(s) 8, 29, 617, 714, 1331
Bsp1286I GDGCHC 3 cut(s) 181, 296, 503
Bsp1407I TGTACA 1 cut(s) 1189
Bsp143I GATC 8 cut(s) 21, 250, 321, 444, 457, 931, 1018, 1270
BspANI GGCC 5 cut(s) 8, 29, 617, 714, 1331
BspCNI CTCAG 6 cut(s) 245, 496, 992, 1108, 1376, 1398
BspDI ATCGAT 2 cut(s) 324, 1160
BspFNI CGCG 5 cut(s) 144, 165, 167, 169, 1320
BspLI GGNNCC 2 cut(s) 244, 837
BspMAI CTGCAG 1 cut(s) 368
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 4 cut(s) 245, 452, 926, 1013
BsrDI GCAATG 2 cut(s) 805, 900
BsrFI RCCGGY 1 cut(s) 239
BsrGI TGTACA 1 cut(s) 1189
BsrI ACTGG 3 cut(s) 514, 739, 1087
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 2 cut(s) 715, 961
BssHII GCGCGC 1 cut(s) 165
BssMI GATC 8 cut(s) 21, 250, 321, 444, 457, 931, 1018, 1270
BssNAI GTATAC 1 cut(s) 812
BssNI GRCGYC 2 cut(s) 219, 554
BssT1I CCWWGG 1 cut(s) 715
Bst1107I GTATAC 1 cut(s) 812
Bst4CI ACNGT 1 cut(s) 1109
Bst6I CTCTTC 2 cut(s) 628, 1173
BstACI GRCGYC 2 cut(s) 219, 554
BstAPI GCANNNNNTGC 3 cut(s) 363, 372, 1154
BstAUI TGTACA 1 cut(s) 1189
BstBAI YACGTR 1 cut(s) 1480
BstC8I GCNNGC 5 cut(s) 6, 167, 181, 241, 1312
BstDEI CTNAG 6 cut(s) 232, 504, 979, 1116, 1363, 1406
BstENI CCTNNNNNAGG 1 cut(s) 1004
BstF5I GGATG 2 cut(s) 700, 1331
BstFNI CGCG 5 cut(s) 144, 165, 167, 169, 1320
BstHHI GCGC 2 cut(s) 167, 169
BstKTI GATC 8 cut(s) 24, 253, 324, 447, 460, 934, 1021, 1273
BstMAI GTCTC 3 cut(s) 1105, 1366, 1422
BstMBI GATC 8 cut(s) 21, 250, 321, 444, 457, 931, 1018, 1270
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 8 cut(s) 14, 35, 95, 189, 363, 372, 1154, 1441
BstSCI CCNGG 1 cut(s) 960
BstSFI CTRYAG 2 cut(s) 364, 1508
BstUI CGCG 5 cut(s) 144, 165, 167, 169, 1320
BstV1I GCAGC 6 cut(s) 435, 616, 1160, 1201, 1431, 1461
BstX2I RGATCY 3 cut(s) 444, 457, 1270
BstXI CCANNNNNNTGG 3 cut(s) 106, 1111, 1322
BstYI RGATCY 3 cut(s) 444, 457, 1270
BstZ17I GTATAC 1 cut(s) 812
Bsu15I ATCGAT 2 cut(s) 324, 1160
BsuRI GGCC 5 cut(s) 8, 29, 617, 714, 1331
BsuTUI ATCGAT 2 cut(s) 324, 1160
BtgZI GCGATG 1 cut(s) 555
BtsCI GGATG 2 cut(s) 700, 1331
BtsIMutI CAGTG 3 cut(s) 521, 1036, 1094
BveI ACCTGC 1 cut(s) 362
Cac8I GCNNGC 5 cut(s) 6, 167, 181, 241, 1312
CfoI GCGC 2 cut(s) 167, 169
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 3 cut(s) 6, 28, 1329
ClaI ATCGAT 2 cut(s) 324, 1160
CseI GACGC 2 cut(s) 133, 208
Csp6I GTAC 4 cut(s) 310, 651, 1183, 1190
CviAII CATG 1 cut(s) 592
CviQI GTAC 4 cut(s) 310, 651, 1183, 1190
DdeI CTNAG 6 cut(s) 232, 504, 979, 1116, 1363, 1406
DpnI GATC 8 cut(s) 23, 252, 323, 446, 459, 933, 1020, 1272
DpnII GATC 8 cut(s) 21, 250, 321, 444, 457, 931, 1018, 1270
DraI TTTAAA 1 cut(s) 888
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 2 cut(s) 615, 712
Eam1104I CTCTTC 2 cut(s) 628, 1173
EarI CTCTTC 2 cut(s) 628, 1173
EciI GGCGGA 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 715
Eco24I GRGCYC 2 cut(s) 181, 296
Eco57I CTGAAG 3 cut(s) 471, 609, 878
EcoNI CCTNNNNNAGG 1 cut(s) 1004
EcoT14I CCWWGG 1 cut(s) 715
EcoT38I GRGCYC 2 cut(s) 181, 296
ErhI CCWWGG 1 cut(s) 715
FaeI CATG 1 cut(s) 595
FalI AAGNNNNNCTT 2 cut(s) 1170, 1202
FaqI GGGAC 2 cut(s) 565, 840
FatI CATG 1 cut(s) 591
FauI CCCGC 3 cut(s) 135, 188, 430
FblI GTMKAC 2 cut(s) 225, 811
FokI GGATG 2 cut(s) 707, 1338
FriOI GRGCYC 2 cut(s) 181, 296
FspBI CTAG 3 cut(s) 384, 1097, 1374
GlaI GCGC 2 cut(s) 166, 168
GsuI CTGGAG 1 cut(s) 620
HaeIII GGCC 5 cut(s) 8, 29, 617, 714, 1331
HapII CCGG 3 cut(s) 240, 330, 961
HgaI GACGC 2 cut(s) 133, 208
HhaI GCGC 2 cut(s) 167, 169
Hin1I GRCGYC 2 cut(s) 219, 554
Hin1II CATG 1 cut(s) 595
Hin6I GCGC 2 cut(s) 165, 167
HinP1I GCGC 2 cut(s) 165, 167
HincII GTYRAC 2 cut(s) 226, 976
HindII GTYRAC 2 cut(s) 226, 976
HindIII AAGCTT 1 cut(s) 1011
HinfI GANTC 4 cut(s) 397, 416, 595, 977
HpaII CCGG 3 cut(s) 240, 330, 961
HphI GGTGA 3 cut(s) 836, 937, 1267
Hpy166II GTNNAC 4 cut(s) 226, 812, 976, 1495
Hpy188I TCNGA 6 cut(s) 250, 457, 505, 574, 897, 1239
Hpy188III TCNNGA 2 cut(s) 599, 1425
Hpy8I GTNNAC 4 cut(s) 226, 812, 976, 1495
Hpy99I CGWCG 6 cut(s) 209, 212, 215, 224, 227, 266
HpyAV CCTTC 6 cut(s) 75, 133, 781, 952, 1202, 1234
HpyCH4III ACNGT 1 cut(s) 1109
HpyCH4IV ACGT 3 cut(s) 204, 554, 1479
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 35, 95, 189, 363, 372, 1154, 1441
HpyF3I CTNAG 6 cut(s) 232, 504, 979, 1116, 1363, 1406
HpySE526I ACGT 3 cut(s) 204, 554, 1479
Hsp92I GRCGYC 2 cut(s) 219, 554
Hsp92II CATG 1 cut(s) 595
HspAI GCGC 2 cut(s) 165, 167
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
Kzo9I GATC 8 cut(s) 21, 250, 321, 444, 457, 931, 1018, 1270
LmnI GCTCC 4 cut(s) 248, 431, 601, 835
Lsp1109I GCAGC 6 cut(s) 435, 616, 1160, 1201, 1431, 1461
LweI GCATC 3 cut(s) 565, 1166, 1430
MaeI CTAG 3 cut(s) 384, 1097, 1374
MaeII ACGT 3 cut(s) 204, 554, 1479
MaeIII GTNAC 5 cut(s) 170, 509, 521, 1255, 1366
MalI GATC 8 cut(s) 23, 252, 323, 446, 459, 933, 1020, 1272
MauBI CGCGCGCG 1 cut(s) 165
MboI GATC 8 cut(s) 21, 250, 321, 444, 457, 931, 1018, 1270
MboII GAAGA 4 cut(s) 615, 884, 1190, 1496
MfeI CAATTG 1 cut(s) 927
MflI RGATCY 3 cut(s) 444, 457, 1270
MhlI GDGCHC 3 cut(s) 181, 296, 503
MlsI TGGCCA 1 cut(s) 617
MluCI AATT 8 cut(s) 287, 358, 370, 406, 883, 927, 1260, 1385
MluI ACGCGT 1 cut(s) 1318
MluNI TGGCCA 1 cut(s) 617
MlyI GAGTC 1 cut(s) 971
MmeI TCCRAC 3 cut(s) 172, 1128, 1303
Mox20I TGGCCA 1 cut(s) 617
MroNI GCCGGC 1 cut(s) 239
MscI TGGCCA 1 cut(s) 617
MseI TTAA 1 cut(s) 887
Msp20I TGGCCA 1 cut(s) 617
MspA1I CMGCKG 3 cut(s) 629, 1151, 1405
MspI CCGG 3 cut(s) 240, 330, 961
MspR9I CCNGG 1 cut(s) 962
MunI CAATTG 1 cut(s) 927
MvnI CGCG 5 cut(s) 144, 165, 167, 169, 1320
MwoI GCNNNNNNNGC 8 cut(s) 14, 35, 95, 189, 363, 372, 1154, 1441
NaeI GCCGGC 1 cut(s) 241
NciI CCSGG 1 cut(s) 962
NdeII GATC 8 cut(s) 21, 250, 321, 444, 457, 931, 1018, 1270
NgoMIV GCCGGC 1 cut(s) 239
NlaIII CATG 1 cut(s) 595
NlaIV GGNNCC 2 cut(s) 244, 837
NmuCI GTSAC 2 cut(s) 170, 1255
PauI GCGCGC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 219
PdiI GCCGGC 1 cut(s) 241
PfeI GAWTC 3 cut(s) 397, 416, 595
PleI GAGTC 1 cut(s) 971
PpsI GAGTC 1 cut(s) 971
Ppu21I YACGTR 1 cut(s) 1480
PsiI TTATAA 1 cut(s) 882
PspN4I GGNNCC 2 cut(s) 244, 837
PspPI GGNCC 3 cut(s) 6, 28, 1329
PstI CTGCAG 1 cut(s) 368
PsuI RGATCY 3 cut(s) 444, 457, 1270
PteI GCGCGC 1 cut(s) 165
PvuII CAGCTG 3 cut(s) 629, 1151, 1405
RsaI GTAC 4 cut(s) 311, 652, 1184, 1191
RsaNI GTAC 4 cut(s) 310, 651, 1183, 1190
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 887
Sau3AI GATC 8 cut(s) 21, 250, 321, 444, 457, 931, 1018, 1270
Sau96I GGNCC 3 cut(s) 6, 28, 1329
SchI GAGTC 1 cut(s) 971
ScrFI CCNGG 1 cut(s) 962
SduI GDGCHC 3 cut(s) 181, 296, 503
SfaNI GCATC 3 cut(s) 565, 1166, 1430
SfcI CTRYAG 2 cut(s) 364, 1508
SmiI ATTTAAAT 1 cut(s) 888
Sse9I AATT 8 cut(s) 287, 358, 370, 406, 883, 927, 1260, 1385
SspMI CTAG 3 cut(s) 384, 1097, 1374
StyD4I CCNGG 1 cut(s) 960
StyI CCWWGG 1 cut(s) 715
SwaI ATTTAAAT 1 cut(s) 888
TaaI ACNGT 1 cut(s) 1109
TaiI ACGT 3 cut(s) 207, 557, 1482
TaqI TCGA 6 cut(s) 153, 225, 324, 588, 751, 1160
TaqII GACCGA 1 cut(s) 189
TasI AATT 8 cut(s) 287, 358, 370, 406, 883, 927, 1260, 1385
TatI WGTACW 2 cut(s) 309, 1189
TauI GCSGC 7 cut(s) 74, 77, 92, 95, 98, 192, 219
TfiI GAWTC 3 cut(s) 397, 416, 595
Tru1I TTAA 1 cut(s) 887
Tru9I TTAA 1 cut(s) 887
TscAI CASTG 3 cut(s) 521, 1036, 1094
TseFI GTSAC 2 cut(s) 170, 1255
TseI GCWGC 6 cut(s) 423, 629, 1148, 1214, 1444, 1474
Tsp45I GTSAC 2 cut(s) 170, 1255
TspDTI ATGAA 1 cut(s) 1192
TspGWI ACGGA 1 cut(s) 1342
TspRI CASTG 3 cut(s) 521, 1036, 1094
XagI CCTNNNNNAGG 1 cut(s) 1004
XapI RAATTY 1 cut(s) 1385
XcmI CCANNNNNNNNNTGG 1 cut(s) 539
XmiI GTMKAC 2 cut(s) 225, 811
XspI CTAG 3 cut(s) 384, 1097, 1374
ZraI GACGTC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.