Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003711

Physical Location & Seq

Genomic Coordinates Forward (+)

17074898 .. 17080711

Gene Structure 5814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG192900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGATTCTGGAGCAGTCTTTTATGGCCAACTCTTCAGCTGCCATCGTTTTCGGGTGTAGTACCTATCAGTCTGGGGATTTGACCAAGACAGATAAAGCGGTGGATGGGATATTTGGGTTCGGCCAAGGGGCATTGTCTGTTATATCCCAGTTGTCATATCGAGGGATAACTCCCAAAGTATTTTCCCATTGTTTGAAGGGAGATGGCAATGGTGGGGGTATACTTGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGTCCCCTCGTTCCATCACAGCCTCATTATAATTTAAATCTTCAGAGCATTGCTGTCAATGGGCAACTCTTACCAATTGATCCAATAGCCTTCACCACATCAAACAGCCGGGGAACTATTGTTGACTCAGGCACAACTTTGACATACCTTGTGGAGGAAGCTTATGATCCTTTTGTCAGTGCTATAACATCGGCTGTTTCACAATCTGCAACTCCCCTTATTTCAAAAGGAAACCAGTGTTATCTAGTCTCCAACAGTTTGGCTGAGGTGTTTCCTCCCGTTAGTCTAAACTTCGCAGCTGGTGCATCGATGGTGTTGAAACCAGAAGAGTACCTTGTACATACGGGTTTCATTGAAGGTGCTGCTATGTGGTGCATTGGCTTTCAGAAGGTTCAGGGAGGGGTGACAATTTTAGGAGATCTTGTTCTAAAAGATAAGATATTTGTGTATGATTTGGCTCGCCAACGCGTTGGATGGGCCAACTATGATTGCTCATTATCCGTAAATGTCTCAGTAACTACTAGCAAAGACGAATTTATCAATGCAGGACAGCTGAGTAAGAGCAACGCATCAAGAGACACGCTTTTCAAGCTGCTGACAACAGGGATTATGGTTGTCTTGCTGCACGTATTGGTGTTAGTGGACTTCCATCTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

306

Amino Acids

32.67

Weight (kDa)

5.16

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	12 - 78	6.8e-14	Xylanase inhibitor N-terminal
Asp	PF00026	16 - 248	9.8e-18	Eukaryotic aspartyl protease
TAXi_C	PF14541	96 - 247	1.6e-25	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36670 AT2G36670 AT2G36670 AT2G36670
fragaria_vesca	FvH4_6g17290 FvH4_6g17290
malus_domestica	MD09G1292800.v1.1 MD12G1102500.v1.1 MD14G1096400.v1.1 MD16G1113800.v1.1 MD17G1282200.v1.1 MD17G1282300.v1.1 MD17G1282800.v1.1 MD17G1283200.v1.1
prunus_persica	Prupe.7G007000_v2.0.a1 Prupe.7G007500_v2.0.a1 Prupe.7G122500_v2.0.a1 Prupe.7G122500_v2.0.a1
pyrus_communis	pycom06g08820 pycom09g07760 pycom09g19650 pycom12g10050 pycom14g09440 pycom16g09750 pycom17g27920
rosa_chinensis	RchiOBHm_Chr3g0471401
rosa_laevigata	RLG00000024180
rosa_roxburghii	Rroxscaffold_6G00409970
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh3AG167400 Rh3BG192900 Rh3CG183300 Rh3DG182600
rosa_wichuraiana	Rw3G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AccI	GTMKAC	1 cut(s)	220
AccII	CGCG	1 cut(s)	729
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	2 cut(s)	335, 422
AcoI	YGGCCR	2 cut(s)	24, 121
AcsI	RAATTY	1 cut(s)	794
AcuI	CTGAAG	2 cut(s)	18, 287
AfaI	GTAC	3 cut(s)	61, 593, 600
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	5 cut(s)	196, 486, 580, 617, 850
AloI	GAACNNNNNNTCC	2 cut(s)	669, 701
AluBI	AGCT	5 cut(s)	38, 422, 560, 814, 853
AluI	AGCT	5 cut(s)	38, 422, 560, 814, 853
Alw26I	GTCTC	3 cut(s)	514, 775, 831
AlwI	GGATC	2 cut(s)	335, 422
AoxI	GGCC	3 cut(s)	24, 121, 738
ApeKI	GCWGC	5 cut(s)	38, 557, 623, 853, 883
ApoI	RAATTY	1 cut(s)	794
AspS9I	GGNCC	1 cut(s)	738
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	3 cut(s)	245, 346, 676
BalI	TGGCCA	1 cut(s)	26
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	5 cut(s)	25, 569, 610, 840, 870
BccI	CCATC	7 cut(s)	50, 98, 197, 283, 565, 729, 918
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	3 cut(s)	514, 775, 831
BfaI	CTAG	2 cut(s)	506, 783
BfmI	CTRYAG	1 cut(s)	917
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	5 cut(s)	39, 558, 624, 854, 884
BlsI	GCNGC	5 cut(s)	40, 559, 625, 855, 885
Bme1390I	CCNGG	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	738
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	2 cut(s)	575, 839
BmuI	ACTGGG	1 cut(s)	142
BpmI	CTGGAG	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	569
BsaAI	YACGTR	1 cut(s)	889
BsaJI	CCNNGG	2 cut(s)	124, 370
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	148, 496
Bse3DI	GCAATG	2 cut(s)	214, 309
BseCI	ATCGAT	1 cut(s)	569
BseDI	CCNNGG	2 cut(s)	124, 370
BseGI	GGATG	2 cut(s)	109, 740
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	2 cut(s)	214, 309
BseMII	CTCAG	4 cut(s)	402, 516, 786, 806
BseNI	ACTGG	2 cut(s)	148, 496
BseXI	GCAGC	5 cut(s)	25, 569, 610, 840, 870
BsgI	GTGCAG	1 cut(s)	869
Bsh1236I	CGCG	1 cut(s)	729
BshFI	GGCC	3 cut(s)	26, 123, 740
BshVI	ATCGAT	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	3 cut(s)	514, 775, 831
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	3 cut(s)	26, 123, 740
Bsp1407I	TGTACA	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	340, 427, 679
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	3 cut(s)	26, 123, 740
BspCNI	CTCAG	4 cut(s)	401, 517, 785, 807
BspDI	ATCGAT	1 cut(s)	569
BspFNI	CGCG	1 cut(s)	729
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	2 cut(s)	335, 422
BsrDI	GCAATG	2 cut(s)	214, 309
BsrGI	TGTACA	1 cut(s)	598
BsrI	ACTGG	2 cut(s)	148, 496
BssECI	CCNNGG	2 cut(s)	124, 370
BssMI	GATC	3 cut(s)	340, 427, 679
BssNAI	GTATAC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	124
Bst1107I	GTATAC	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	2 cut(s)	37, 582
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstAUI	TGTACA	1 cut(s)	598
BstBAI	YACGTR	1 cut(s)	889
BstC8I	GCNNGC	1 cut(s)	721
BstDEI	CTNAG	4 cut(s)	388, 525, 772, 815
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstF5I	GGATG	2 cut(s)	109, 740
BstFNI	CGCG	1 cut(s)	729
BstKTI	GATC	3 cut(s)	343, 430, 682
BstMAI	GTCTC	3 cut(s)	514, 775, 831
BstMBI	GATC	3 cut(s)	340, 427, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 850
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	917
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	5 cut(s)	25, 569, 610, 840, 870
BstX2I	RGATCY	1 cut(s)	679
BstXI	CCANNNNNNTGG	2 cut(s)	520, 731
BstYI	RGATCY	1 cut(s)	679
BstZ17I	GTATAC	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	569
BsuRI	GGCC	3 cut(s)	26, 123, 740
BsuTUI	ATCGAT	1 cut(s)	569
BtsCI	GGATG	2 cut(s)	109, 740
BtsIMutI	CAGTG	2 cut(s)	445, 503
Cac8I	GCNNGC	1 cut(s)	721
Cfr13I	GGNCC	1 cut(s)	738
ClaI	ATCGAT	1 cut(s)	569
Csp6I	GTAC	3 cut(s)	60, 592, 599
CviQI	GTAC	3 cut(s)	60, 592, 599
DdeI	CTNAG	4 cut(s)	388, 525, 772, 815
DpnI	GATC	3 cut(s)	342, 429, 681
DpnII	GATC	3 cut(s)	340, 427, 679
DraI	TTTAAA	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	24, 121
Eam1104I	CTCTTC	2 cut(s)	37, 582
EarI	CTCTTC	2 cut(s)	37, 582
Eco130I	CCWWGG	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	18, 287
EcoNI	CCTNNNNNAGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FaqI	GGGAC	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	5 cut(s)	39, 558, 624, 854, 884
FokI	GGATG	2 cut(s)	116, 747
Fsp4HI	GCNGC	5 cut(s)	39, 558, 624, 854, 884
FspBI	CTAG	2 cut(s)	506, 783
GluI	GCNGC	5 cut(s)	39, 558, 624, 854, 884
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	26, 123, 740
HapII	CCGG	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	2 cut(s)	4, 386
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	3 cut(s)	245, 346, 676
Hpy166II	GTNNAC	3 cut(s)	221, 385, 904
Hpy188I	TCNGA	2 cut(s)	306, 648
Hpy188III	TCNNGA	2 cut(s)	8, 834
Hpy8I	GTNNAC	3 cut(s)	221, 385, 904
HpyAV	CCTTC	4 cut(s)	190, 361, 611, 643
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	1 cut(s)	888
HpyCH4V	TGCA	5 cut(s)	470, 566, 636, 806, 886
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 850
HpyF3I	CTNAG	4 cut(s)	388, 525, 772, 815
HpySE526I	ACGT	1 cut(s)	888
Kzo9I	GATC	3 cut(s)	340, 427, 679
LmnI	GCTCC	2 cut(s)	10, 244
Lsp1109I	GCAGC	5 cut(s)	25, 569, 610, 840, 870
LweI	GCATC	2 cut(s)	575, 839
MaeI	CTAG	2 cut(s)	506, 783
MaeII	ACGT	1 cut(s)	888
MaeIII	GTNAC	2 cut(s)	664, 775
MalI	GATC	3 cut(s)	342, 429, 681
MboI	GATC	3 cut(s)	340, 427, 679
MboII	GAAGA	4 cut(s)	24, 293, 599, 905
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	1 cut(s)	679
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	4 cut(s)	292, 336, 669, 794
MluI	ACGCGT	1 cut(s)	727
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	2 cut(s)	537, 712
MnlI	CCTC	7 cut(s)	155, 278, 294, 409, 520, 546, 653
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	3 cut(s)	38, 560, 814
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	2 cut(s)	563, 850
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	3 cut(s)	340, 427, 679
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	664
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	5 cut(s)	40, 559, 625, 855, 885
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Ppu21I	YACGTR	1 cut(s)	889
PsiI	TTATAA	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	738
PsuI	RGATCY	1 cut(s)	679
PvuII	CAGCTG	3 cut(s)	38, 560, 814
RsaI	GTAC	3 cut(s)	61, 593, 600
RsaNI	GTAC	3 cut(s)	60, 592, 599
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	5 cut(s)	39, 558, 624, 854, 884
Sau3AI	GATC	3 cut(s)	340, 427, 679
Sau96I	GGNCC	1 cut(s)	738
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	371
SfaNI	GCATC	2 cut(s)	575, 839
SfcI	CTRYAG	1 cut(s)	917
SmiI	ATTTAAAT	1 cut(s)	297
Sse9I	AATT	4 cut(s)	292, 336, 669, 794
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	2 cut(s)	506, 783
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	124
SwaI	ATTTAAAT	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	1 cut(s)	891
TaqI	TCGA	2 cut(s)	160, 569
TasI	AATT	4 cut(s)	292, 336, 669, 794
TatI	WGTACW	1 cut(s)	598
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	2 cut(s)	445, 503
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	5 cut(s)	38, 557, 623, 853, 883
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	1 cut(s)	601
TspGWI	ACGGA	1 cut(s)	751
TspRI	CASTG	2 cut(s)	445, 503
XagI	CCTNNNNNAGG	1 cut(s)	413
XapI	RAATTY	1 cut(s)	794
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	2 cut(s)	506, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.