Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003711

Physical Location & Seq

Genomic Coordinates Reverse (-)

34141342 .. 34141920

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1282300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGCGGAGAAGAAGCCACCGGTTATTTCATATCAGATGAGTTTTCTCTTGATATGATTCCGGTGCACTCCCAAGGTGCACATGGATCTTCAACACCCATTATTTTCAGGTGTTCTACCACGGTGTCCGGTCTTTTCGCTGAGACCGAGCTTTCACTCAATGGGATATTGGGATTAAGCCAAGGTCCATTGTCTGTCGTATCACAGTTATCCTCTCGAGGGATAACTCCGAATGTCTTCTCCCACTGTTTAAAGGGAGATGGCGATGGTGGAGGTACACTTGTACTGGGGGAGATTTTGGAGCCGAGTATTGTGTATACTCCCCTTGTCCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

113

Amino Acids

11.6

Weight (kDa)

4.56

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	4 - 97	1.2e-15	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36670 AT2G36670 AT2G36670 AT2G36670
fragaria_vesca	FvH4_6g17290 FvH4_6g17290
malus_domestica	MD09G1292800.v1.1 MD12G1102500.v1.1 MD14G1096400.v1.1 MD16G1113800.v1.1 MD17G1282200.v1.1 MD17G1282300.v1.1 MD17G1282800.v1.1 MD17G1283200.v1.1
prunus_persica	Prupe.7G007000_v2.0.a1 Prupe.7G007500_v2.0.a1 Prupe.7G122500_v2.0.a1 Prupe.7G122500_v2.0.a1
pyrus_communis	pycom06g08820 pycom09g07760 pycom09g19650 pycom12g10050 pycom14g09440 pycom16g09750 pycom17g27920
rosa_chinensis	RchiOBHm_Chr3g0471401
rosa_laevigata	RLG00000024180
rosa_roxburghii	Rroxscaffold_6G00409970
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh3AG167400 Rh3BG192900 Rh3CG183300 Rh3DG182600
rosa_wichuraiana	Rw3G015770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	317
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	94
AfaI	GTAC	2 cut(s)	277, 285
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgeI	ACCGGT	1 cut(s)	20
AgsI	TTSAA	1 cut(s)	93
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw21I	GWGCWC	2 cut(s)	69, 82
Alw26I	GTCTC	1 cut(s)	137
Alw44I	GTGCAC	2 cut(s)	65, 78
AlwI	GGATC	1 cut(s)	94
Ama87I	CYCGRG	1 cut(s)	216
ApaLI	GTGCAC	2 cut(s)	65, 78
AsiGI	ACCGGT	1 cut(s)	20
Asp700I	GAANNNNTTC	1 cut(s)	236
AspS9I	GGNCC	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	216
AvaII	GGWCC	1 cut(s)	185
BaeGI	GKGCMC	2 cut(s)	69, 82
BaeI	ACNNNNGTAYC	2 cut(s)	267, 300
BbsI	GAAGAC	1 cut(s)	229
Bbv12I	GWGCWC	2 cut(s)	69, 82
BccI	CCATC	2 cut(s)	254, 260
BcoDI	GTCTC	1 cut(s)	137
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	296
BmuI	ACTGGG	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	3 cut(s)	73, 120, 181
BsaWI	WCCGGW	3 cut(s)	20, 61, 128
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	73, 120, 181
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	291
BseSI	GKGCMC	2 cut(s)	69, 82
BshTI	ACCGGT	1 cut(s)	20
BsiHKAI	GWGCWC	2 cut(s)	69, 82
BsiHKCI	CYCGRG	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	21, 62, 129
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	314
Bso31I	GGTCTC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	69, 82
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	1 cut(s)	6
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	291
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	73, 120, 181
BssMI	GATC	1 cut(s)	86
BssNAI	GTATAC	1 cut(s)	318
BssT1I	CCWWGG	2 cut(s)	73, 181
Bst1107I	GTATAC	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	124, 207, 248
BstDEI	CTNAG	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	120
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	86
BstSLI	GKGCMC	2 cut(s)	69, 82
BstV2I	GAAGAC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BstZ17I	GTATAC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	2 cut(s)	276, 284
CspAI	ACCGGT	1 cut(s)	20
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	4 cut(s)	17, 151, 180, 304
CviKI_1	RGCY	4 cut(s)	17, 151, 180, 304
CviQI	GTAC	2 cut(s)	276, 284
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
DraI	TTTAAA	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	73, 181
Eco31I	GGTCTC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	73, 181
ErhI	CCWWGG	2 cut(s)	73, 181
FaeI	CATG	1 cut(s)	86
FaiI	YATR	4 cut(s)	32, 56, 84, 318
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	317
HapII	CCGG	3 cut(s)	21, 62, 129
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	3 cut(s)	21, 62, 129
Hpy166II	GTNNAC	4 cut(s)	67, 80, 278, 318
Hpy188I	TCNGA	2 cut(s)	37, 231
Hpy188III	TCNNGA	2 cut(s)	50, 216
Hpy8I	GTNNAC	4 cut(s)	67, 80, 278, 318
HpyCH4III	ACNGT	3 cut(s)	124, 207, 248
HpyCH4V	TGCA	2 cut(s)	67, 80
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	5 cut(s)	34, 75, 94, 142, 272
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	3 cut(s)	23, 81, 229
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	69, 82
MnlI	CCTC	3 cut(s)	212, 223, 266
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	2 cut(s)	176, 251
MspI	CCGG	3 cut(s)	21, 62, 129
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	1 cut(s)	303
NmeAIII	GCCGAG	1 cut(s)	330
PaeR7I	CTCGAG	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	236
PfeI	GAWTC	1 cut(s)	58
PinAI	ACCGGT	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	2 cut(s)	277, 285
RsaNI	GTAC	2 cut(s)	276, 284
SaqAI	TTAA	2 cut(s)	176, 251
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	1 cut(s)	185
SduI	GDGCHC	2 cut(s)	69, 82
SetI	ASST	5 cut(s)	79, 113, 153, 187, 277
Sfr274I	CTCGAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	216
SmoI	CTYRAG	1 cut(s)	216
SsiI	CCGC	1 cut(s)	6
StyI	CCWWGG	2 cut(s)	73, 181
TaaI	ACNGT	3 cut(s)	124, 207, 248
TaqI	TCGA	1 cut(s)	217
TaqII	GACCGA	1 cut(s)	161
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	176, 251
Tru9I	TTAA	2 cut(s)	176, 251
TscAI	CASTG	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	251
VneI	GTGCAC	2 cut(s)	65, 78
VpaK11BI	GGWCC	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XhoI	CTCGAG	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.